메뉴 건너뛰기




Volumn 191, Issue 16, 2009, Pages 5224-5231

Investigation of carbon metabolism in "Dehalococcoides ethenogenes" strain 195 by use of isotopomer and transcriptomic analyses

Author keywords

[No Author keywords available]

Indexed keywords

ACETYL COENZYME A; AMMONIA LYASE; CITRAMALATE SYNTHASE; CITRATE SYNTHASE; OXALOACETIC ACID; PYRUVATE CARBOXYLASE; PYRUVATE SYNTHASE; PYRUVIC ACID; TETRACHLOROETHYLENE; THREONINE AMMONIA LYASE; TRANSCRIPTOME; TRICARBOXYLIC ACID; TRICHLOROETHYLENE; UNCLASSIFIED DRUG;

EID: 67749139566     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.00085-09     Document Type: Article
Times cited : (68)

References (42)
  • 1
    • 38449091968 scopus 로고    scopus 로고
    • Identification of a chlorobenzene reductive dehalogenase in Dehalococcoides sp. strain CBDB1
    • Adrian, L., J. Rahnenfuhrer, J. Gobom, and T. Holscher. 2007. Identification of a chlorobenzene reductive dehalogenase in Dehalococcoides sp. strain CBDB1. Appl. Environ. Microbiol. 73:7717-7724.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 7717-7724
    • Adrian, L.1    Rahnenfuhrer, J.2    Gobom, J.3    Holscher, T.4
  • 2
    • 0034735782 scopus 로고    scopus 로고
    • Bacterial dehalorespiration with chlorinated benzenes
    • Adrian, L., U. Szewzyk, J. Wecke, and H. Gorisch. 2000. Bacterial dehalorespiration with chlorinated benzenes. Nature 408:580-583.
    • (2000) Nature , vol.408 , pp. 580-583
    • Adrian, L.1    Szewzyk, U.2    Wecke, J.3    Gorisch, H.4
  • 4
    • 35348941242 scopus 로고    scopus 로고
    • Accurate assessment of amino acid mass isotopomer distributions for metabolic flux analysis
    • Antoniewicz, M. R., J. K. Kelleher, and G. Stephanopoulos. 2007. Accurate assessment of amino acid mass isotopomer distributions for metabolic flux analysis. Anal. Chem. 79:7554-7559.
    • (2007) Anal. Chem , vol.79 , pp. 7554-7559
    • Antoniewicz, M.R.1    Kelleher, J.K.2    Stephanopoulos, G.3
  • 5
    • 0006473783 scopus 로고    scopus 로고
    • Toxicological profile for trichloroethylene. U.S. Department of Health and Human Services, Public Health Service, Atlanta, GA
    • Agency for Toxic Substances and Disease Registry. 1997. Toxicological profile for trichloroethylene. U.S. Department of Health and Human Services, Public Health Service, Atlanta, GA.
    • (1997) Agency for Toxic Substances and Disease Registry
  • 6
    • 0037315711 scopus 로고    scopus 로고
    • Growth of a Dehalococcoides-like microorganism on vinyl chloride and cis-dichloroethene as electron acceptors as determined by competitive PCR
    • Cupples, A. M., A. M. Spormann, and P. L. McCarty. 2003. Growth of a Dehalococcoides-like microorganism on vinyl chloride and cis-dichloroethene as electron acceptors as determined by competitive PCR. Appl. Environ. Microbiol. 69:953-959.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 953-959
    • Cupples, A.M.1    Spormann, A.M.2    McCarty, P.L.3
  • 7
    • 34248211608 scopus 로고    scopus 로고
    • Influence of vitamin B12 and cocultures on the growth of Dehalococcoides isolates in defined medium
    • He, J., V. F. Holmes, P. K. H. Lee, and L. Alvarez-Cohen. 2007. Influence of vitamin B12 and cocultures on the growth of Dehalococcoides isolates in defined medium. Appl. Environ. Microbiol. 73:2847-2853.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 2847-2853
    • He, J.1    Holmes, V.F.2    Lee, P.K.H.3    Alvarez-Cohen, L.4
  • 8
    • 23944434942 scopus 로고    scopus 로고
    • Isolation and characterization of Dehalococcoides sp. strain FL2, a trichloroethene (TCE)- and 1,2-dichloroethene-respiring anaerobe
    • He, J., Y. Sung, R. Krajmalnik-Brown, K. M. Ritalahti, and F. E. Löffler. 2005. Isolation and characterization of Dehalococcoides sp. strain FL2, a trichloroethene (TCE)- and 1,2-dichloroethene-respiring anaerobe. Environ. Microbiol. 7:1442-1450.
    • (2005) Environ. Microbiol , vol.7 , pp. 1442-1450
    • He, J.1    Sung, Y.2    Krajmalnik-Brown, R.3    Ritalahti, K.M.4    Löffler, F.E.5
  • 9
    • 0038264087 scopus 로고    scopus 로고
    • Detoxification of vinyl chloride to ethene coupled to growth of an anaerobic bacterium
    • He, J. Z., K. M. Ritalahti, K. L. Yang, S. S. Koenigsberg, and F. E. Löffler. 2003. Detoxification of vinyl chloride to ethene coupled to growth of an anaerobic bacterium. Nature 424:62-65.
    • (2003) Nature , vol.424 , pp. 62-65
    • He, J.Z.1    Ritalahti, K.M.2    Yang, K.L.3    Koenigsberg, S.S.4    Löffler, F.E.5
  • 10
    • 44349165608 scopus 로고    scopus 로고
    • Demonstration of enhanced bioremediation in a TCE source area at Launch Complex 34, Cape Canaveral Air Force Station
    • Hood, E. D., D. W. Major, J. W. Quinn, W. S. Yoon, A. Gavaskar, and E. A. Edwards. 2008. Demonstration of enhanced bioremediation in a TCE source area at Launch Complex 34, Cape Canaveral Air Force Station. Ground Water Monit. Remediat. 28:98-107.
    • (2008) Ground Water Monit. Remediat , vol.28 , pp. 98-107
    • Hood, E.D.1    Major, D.W.2    Quinn, J.W.3    Yoon, W.S.4    Gavaskar, A.5    Edwards, E.A.6
  • 11
    • 43049147593 scopus 로고    scopus 로고
    • Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase
    • Johnson, D. R., E. L. Brodie, A. E. Hubbard, G. L. Andersen, S. H. Zinder, and L. Alvarez-Cohen. 2008. Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase. Appl. Environ. Microbiol. 74:2864-2872.
    • (2008) Appl. Environ. Microbiol , vol.74 , pp. 2864-2872
    • Johnson, D.R.1    Brodie, E.L.2    Hubbard, A.E.3    Andersen, G.L.4    Zinder, S.H.5    Alvarez-Cohen, L.6
  • 12
    • 32044454849 scopus 로고    scopus 로고
    • Transcriptional expression of the tceA gene in a Dehalococcoides-containing microbial enrichment
    • Johnson, D. R., P. K. H. Lee, V. F. Holmes, A. C. Fortin, and L. Alvarez-Cohen. 2005. Transcriptional expression of the tceA gene in a Dehalococcoides-containing microbial enrichment. Appl. Environ. Microbiol. 71:7145-7151.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 7145-7151
    • Johnson, D.R.1    Lee, P.K.H.2    Holmes, V.F.3    Fortin, A.C.4    Alvarez-Cohen, L.5
  • 14
    • 27144500225 scopus 로고    scopus 로고
    • Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1
    • Kube, M., A. Beck, S. H. Zinder, H. Kuhl, R. Reinhardt, and L. Adrian. 2005. Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1. Nat. Biotechnol. 23:1269-1273.
    • (2005) Nat. Biotechnol , vol.23 , pp. 1269-1273
    • Kube, M.1    Beck, A.2    Zinder, S.H.3    Kuhl, H.4    Reinhardt, R.5    Adrian, L.6
  • 15
    • 33748770056 scopus 로고    scopus 로고
    • Reductive dehalogenase gene expression as a biomarker for physiological activity of Dehalococcoides spp
    • Lee, P. K. H., D. R. Johnson, V. F. Holmes, J. He, and L. Alvarez-Cohen. 2006. Reductive dehalogenase gene expression as a biomarker for physiological activity of Dehalococcoides spp. Appl. Environ. Microbiol. 72:6161-6168.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 6161-6168
    • Lee, P.K.H.1    Johnson, D.R.2    Holmes, V.F.3    He, J.4    Alvarez-Cohen, L.5
  • 17
    • 34249796380 scopus 로고    scopus 로고
    • Re-citrate synthase from Clostridium kluyveri is phylogenetically related to homocitrate synthase and isopropylmalate synthase rather than to Sicitrate synthase
    • Li, F. L., C. H. Hagemeier, H. Seedorf, G. Gottschalk, and R. K. Thauer. 2007. Re-citrate synthase from Clostridium kluyveri is phylogenetically related to homocitrate synthase and isopropylmalate synthase rather than to Sicitrate synthase. J. Bacteriol. 189:4299-4304.
    • (2007) J. Bacteriol , vol.189 , pp. 4299-4304
    • Li, F.L.1    Hagemeier, C.H.2    Seedorf, H.3    Gottschalk, G.4    Thauer, R.K.5
  • 18
    • 0031980176 scopus 로고    scopus 로고
    • Reductive dechlorination of tetrachloroethene to ethene by a twocomponent enzyme pathway
    • Magnuson, J. K., R. V. Stern, J. M. Gossett, S. H. Zinder, and D. R. Burris. 1998. Reductive dechlorination of tetrachloroethene to ethene by a twocomponent enzyme pathway. Appl. Environ. Microbiol. 64:1270-1275.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 1270-1275
    • Magnuson, J.K.1    Stern, R.V.2    Gossett, J.M.3    Zinder, S.H.4    Burris, D.R.5
  • 20
    • 0344622120 scopus 로고    scopus 로고
    • Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene
    • Maymo-Gatell, X., Y.-T. Chien, J. M. Gossett, and S. H. Zinder. 1997. Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene. Science 276:1568-1571.
    • (1997) Science , vol.276 , pp. 1568-1571
    • Maymo-Gatell, X.1    Chien, Y.-T.2    Gossett, J.M.3    Zinder, S.H.4
  • 21
    • 0035251669 scopus 로고    scopus 로고
    • Reductive dechlorination of cis-1,2-dichloroethene and vinyl chloride by Dehalococcoides ethenogenes
    • Maymo-Gatell, X., I. Nijenhuis, and S. H. Zinder. 2001. Reductive dechlorination of cis-1,2-dichloroethene and vinyl chloride by "Dehalococcoides ethenogenes." Environ. Sci. Technol. 35:516-521.
    • (2001) Environ. Sci. Technol , vol.35 , pp. 516-521
    • Maymo-Gatell, X.1    Nijenhuis, I.2    Zinder, S.H.3
  • 23
    • 33746767681 scopus 로고    scopus 로고
    • Transcription and mass-spectroscopic proteomic studies of electron transport oxidoreductases in Dehalococcoides ethenogenes
    • Morris, R. M., S. Sowell, D. Barofsky, S. Zinder, and R. Richardson. 2006. Transcription and mass-spectroscopic proteomic studies of electron transport oxidoreductases in Dehalococcoides ethenogenes. Environ. Microbiol. 8:1499-1509.
    • (2006) Environ. Microbiol , vol.8 , pp. 1499-1509
    • Morris, R.M.1    Sowell, S.2    Barofsky, D.3    Zinder, S.4    Richardson, R.5
  • 24
    • 4143085164 scopus 로고    scopus 로고
    • Molecular identification of the catabolic vinyl chloride reductase from Dehalococcoides sp. strain VS and its environmental distribution
    • Muller, J. A., B. M. Rosner, G. Von Abendroth, G. Meshulam-Simon, P. L. McCarty, and A. M. Spormann. 2004. Molecular identification of the catabolic vinyl chloride reductase from Dehalococcoides sp. strain VS and its environmental distribution. Appl. Environ. Microbiol. 70:4880-4888.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 4880-4888
    • Muller, J.A.1    Rosner, B.M.2    Von Abendroth, G.3    Meshulam-Simon, G.4    McCarty, P.L.5    Spormann, A.M.6
  • 26
    • 15444368096 scopus 로고    scopus 로고
    • Characterization of hydrogenase and reductive dehalogenase activities of Dehalococcoides ethenogenes strain 195
    • Nijenhuis, I., and S. H. Zinder. 2005. Characterization of hydrogenase and reductive dehalogenase activities of Dehalococcoides ethenogenes strain 195. Appl. Environ. Microbiol. 71:1664-1667.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 1664-1667
    • Nijenhuis, I.1    Zinder, S.H.2
  • 27
    • 38949157812 scopus 로고    scopus 로고
    • Co-regulation of metabolic genes is better explained by flux coupling than by network distance
    • Notebaart, R. A., B. Teusink, R. J. Siezen, and B. Papp. 2008. Co-regulation of metabolic genes is better explained by flux coupling than by network distance. PLoS Comput. Biol. 4:e26.
    • (2008) PLoS Comput. Biol , vol.4
    • Notebaart, R.A.1    Teusink, B.2    Siezen, R.J.3    Papp, B.4
  • 28
    • 40949129223 scopus 로고    scopus 로고
    • Correlation of respiratory gene expression levels and pseudo-steady-state PCE respiration rates in Dehalococcoides ethenogenes
    • Rahm, B. G., and R. E. Richardson. 2008. Correlation of respiratory gene expression levels and pseudo-steady-state PCE respiration rates in Dehalococcoides ethenogenes. Environ. Sci. Technol. 42:416-421.
    • (2008) Environ. Sci. Technol , vol.42 , pp. 416-421
    • Rahm, B.G.1    Richardson, R.E.2
  • 29
    • 0346729773 scopus 로고    scopus 로고
    • Development of degenerate and specific PCR primers for the detection and isolation of known and putative chloroethene reductive dehalogenase genes
    • Regeard, C., J. Maillard, and C. Holliger. 2004. Development of degenerate and specific PCR primers for the detection and isolation of known and putative chloroethene reductive dehalogenase genes. J. Microbiol. Methods 56:107-118.
    • (2004) J. Microbiol. Methods , vol.56 , pp. 107-118
    • Regeard, C.1    Maillard, J.2    Holliger, C.3
  • 30
    • 41549147373 scopus 로고    scopus 로고
    • Elucidation of an alternate isoleucine biosynthesis pathway in Geobacter sulfurreducens
    • Risso, C., S. J. Van Dien, A. Orloff, D. R. Lovley, and M. V. Coppi. 2008. Elucidation of an alternate isoleucine biosynthesis pathway in Geobacter sulfurreducens. J. Bacteriol. 190:2266-2274.
    • (2008) J. Bacteriol , vol.190 , pp. 2266-2274
    • Risso, C.1    Van Dien, S.J.2    Orloff, A.3    Lovley, D.R.4    Coppi, M.V.5
  • 32
    • 0037094251 scopus 로고    scopus 로고
    • Stable carbon isotope fractionation during enhanced in situ bioremediation of trichloroethene
    • Song, D. L., M. E. Conrad, K. S. Sorenson, and L. Alvarez-Cohen. 2002. Stable carbon isotope fractionation during enhanced in situ bioremediation of trichloroethene. Environ. Sci. Technol. 36:2262-2268.
    • (2002) Environ. Sci. Technol , vol.36 , pp. 2262-2268
    • Song, D.L.1    Conrad, M.E.2    Sorenson, K.S.3    Alvarez-Cohen, L.4
  • 33
    • 33644954959 scopus 로고    scopus 로고
    • Quantitative PCR confirms purity of strain GT, a novel trichloroethene-to-ethenerespiring Dehalococcoides isolate
    • Sung, Y., K. M. Ritalahti, R. P. Apkarian, and F. E. Löffler. 2006. Quantitative PCR confirms purity of strain GT, a novel trichloroethene-to-ethenerespiring Dehalococcoides isolate. Appl. Environ. Microbiol. 72:1980-1987.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 1980-1987
    • Sung, Y.1    Ritalahti, K.M.2    Apkarian, R.P.3    Löffler, F.E.4
  • 34
    • 34250829079 scopus 로고    scopus 로고
    • Flux analysis of central metabolic pathways in Geobacter metallireducens during reduction of soluble Fe(III)-nitrilotriacetic acid
    • Tang, Y. J., R. Chakraborty, H. G. Martin, J. Chu, T. C. Hazen, and J. D. Keasling. 2007. Flux analysis of central metabolic pathways in Geobacter metallireducens during reduction of soluble Fe(III)-nitrilotriacetic acid. Appl. Environ. Microbiol. 73:3859-3864.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 3859-3864
    • Tang, Y.J.1    Chakraborty, R.2    Martin, H.G.3    Chu, J.4    Hazen, T.C.5    Keasling, J.D.6
  • 35
    • 33846561094 scopus 로고    scopus 로고
    • Anaerobic central metabolic pathways in Shewanella oneidensis MR-1 reinterpreted in the light of isotopic metabolite labeling
    • Tang, Y. J., A. L. Meadows, J. Kirby, and J. D. Keasling. 2007. Anaerobic central metabolic pathways in Shewanella oneidensis MR-1 reinterpreted in the light of isotopic metabolite labeling. J. Bacteriol. 189:894-901.
    • (2007) J. Bacteriol , vol.189 , pp. 894-901
    • Tang, Y.J.1    Meadows, A.L.2    Kirby, J.3    Keasling, J.D.4
  • 36
  • 37
    • 0038032435 scopus 로고    scopus 로고
    • U.S. Department of Health and Human Services, 11th ed. U.S. Department of Health and Human Services, Research Triangle Park, NC
    • U.S. Department of Health and Human Services. 2005. Report on carcinogens, 11th ed. U.S. Department of Health and Human Services, Research Triangle Park, NC.
    • (2005) Report on carcinogens
  • 38
    • 0842343470 scopus 로고    scopus 로고
    • New tools for mass isotopomer data evaluation in C-13 flux analysis: Mass isotope correction, data consistency checking, and precursor relationships
    • Wahl, S. A., M. Dauner, and W. Wiechert. 2004. New tools for mass isotopomer data evaluation in C-13 flux analysis: mass isotope correction, data consistency checking, and precursor relationships. Biotechnol. Bioeng. 85:259-268.
    • (2004) Biotechnol. Bioeng , vol.85 , pp. 259-268
    • Wahl, S.A.1    Dauner, M.2    Wiechert, W.3
  • 41
    • 10644224511 scopus 로고
    • Formation of methane by bacterial extracts
    • Wolin, E. A., M. J. Wolin, and R. S. Wolfe. 1963. Formation of methane by bacterial extracts. J. Biol. Chem. 238:2882-2886.
    • (1963) J. Biol. Chem , vol.238 , pp. 2882-2886
    • Wolin, E.A.1    Wolin, M.J.2    Wolfe, R.S.3
  • 42
    • 3843065512 scopus 로고    scopus 로고
    • Isoleucine biosynthesis in Leptospira interrogans serotype lai strain 56601 proceeds via a threonine-independent pathway
    • Xu, H., Y. Z. Zhang, X. K. Guo, S. X. Ren, A. A. Staempfli, J. S. Chiao, W. H. Jiang, and G. P. Zhao. 2004. Isoleucine biosynthesis in Leptospira interrogans serotype lai strain 56601 proceeds via a threonine-independent pathway. J. Bacteriol. 186:5400-5409.
    • (2004) J. Bacteriol , vol.186 , pp. 5400-5409
    • Xu, H.1    Zhang, Y.Z.2    Guo, X.K.3    Ren, S.X.4    Staempfli, A.A.5    Chiao, J.S.6    Jiang, W.H.7    Zhao, G.P.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.