Identification of actinomycetes producing phospholipase D with high transphosphatidylation activity

Current Microbiology

Volumn 60, Issue 5, 2010, Pages 365-372

  Nakazawa, Yozo ^a   Suzuki, Rei ^a   Uchino, Masataka ^a   Sagane, Yoshimasa ^b   Kudo, Takuji ^c   Nagai, Takeshi ^a   Sato, Hiroaki ^a   Takano, Katsumi ^a  

^a TOKYO UNIVERSITY OF AGRICULTURE   (Japan)

^b UNIVERSITY OF BERGEN   (Norway)

^c RIKEN BIORESOURCE CENTER   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; PHOSPHOLIPASE D; RIBOSOME DNA; RNA 16S;

ARTICLE; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; ENZYMOLOGY; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; STREPTOMYCES;

BACTERIAL PROTEINS; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHOLIPASE D; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; STREPTOMYCES;

EID: 77953116126     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-009-9551-3     Document Type: Article

References (40)

1. Doig SD, Diks RMM (2003) Toolbox for exchanging constituent fatty acids in lecithins. Eur J Lipid Technol 105:359-367
2. Kudo S, Kuroda A (1990) Enzymatic production of transphosphatidylated lecithin and its use. Bio Ind 7:494-500 (in Japanese)
3. Suzuki S, Yamatoya H, Sakai M, Kataoka A, Furushiro M, Kudo S (2001) Oral administration of soybean lecithin transphosphatidylated phosphatidylserine improves memory impairment in aged rats. J Nutr 131:2951-2956
4. Jorissen BL, Brouns F, Van Boxtel MPJ, Riedel WJ (2002) Safety of soy-derived phosphatidylserine in elderly people. Nutr Neurosci 5:337-343
5. Morris AJ, Frohman MA, Engebrecht J (1997) Measurement of phospholipase D activity. Anal Biochem 252:1-9
6. D'Arrigo P, de Ferra L, Piergianni V, Selva A, Servi S, Strini A (1996) Preparative transformation of natural phospholipids catalyzed by phospholipase D from Streptomyces. J Chem Soc Perkin Trans I 21:2651-2656
7. Hirche F, Ulbrich-Hofmann R (2000) The interdependence of solvent, acceptor alcohol and enzyme source in transphosphatidylation by phospholipase D. Biocatal Biotransformation 18:343-353
8. Takami M, Hidaka N, Suzuki Y (1994) Phospholipase D-catalyzed synthesis of phosphatidyl aromatic compounds. Biosci Biotechnol Biochem 58:2140-2144
9. Nakazawa Y, Uchino M, Sagane Y, Sato H, Takano K (2009) Isolation and characterization of actinomycetes strains that produce phospholipase D having high transphosphatidylation activity. Microbiol Res 164:43-48
10. Shirling EB, Gottlieb D (1966) Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313-340
11. Rayner RW (1970) A mycological colour chart. Commonwealth Mycological Institute and British Mycological Society, Commonwealth Agricultural Bureaux, Kew, Surrey, UK
12. Saito H, Miura K (1963) Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72:619-629
13. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
14. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
15. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
16. Felsenstein J (1985) Conference limits on phylogenies: an approach using the bootstrap. Evolution 39:783-789
17. Ezaki T, Hashimoto Y, Yabuuchi E (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224-229
18. Imamura S, Horiuti Y (1978) Enzymatic determination of phospholipase D activity with choline oxidase. J Biochem 83:677-680
19. Hasegawa M, Ota N, Aisaka K (1992) Cloning and expression of phospholipase D-K gene of Streptomyces. Jpn Kokai Tokkyo Koho JP-04088981 (A-1992-0323)
20. Iwasaki Y, Nakano H, Yamane T (1994) Phospholipase D from Streptomyces antibioticus: cloning, sequencing, expression and relationship to other phospholipases. Appl Microbiol Biotechnol 42:290-299
21. Takahara M, Horyo K, Imamura S (1993) Cloning and expression of phospholipase D-P gene of Streptomyces. Jpn Kokai Tokkyo Koho JP-05252935 (A-1993-1005)
22. Zambonelli C, Morandi P, Vanoni MA, Tedeschi G, Servi S, Curti B, Carrea G, Di Lorenzo R, Monti D (2003) Cloning and expression in Escherichia coli of the gene encoding Streptomyces PMF PLD, a phospholipase D with high transphosphatidylation activity. Enzyme Microb Technol 33:676-688
23. Altschul SF, Madden TL, Schäffer AA, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
24. Pernodet JL, Boccard F, Alegre MT, Gagnat J, Guerineau M (1989) Organization and nucleotide sequence analysis of a ribosomal RNA gene cluster from Streptomyces ambofaciens. Gene 79:33-46
25. Shirling EB, Gottlieb D (1968) Cooperative description of type cultures of Streptomyces. III. Additional species descriptions from first and second studies. Int J Syst Bacteriol 18:279-392
26. Shirling EB, Gottlieb D (1969) Cooperative description of type cultures of Streptomyces. IV. Species descriptions from the second, third and fourth studies. Int J Syst Bacteriol 19:391-512
27. Shirling EB, Gottlieb D (1972) Cooperative description of type strains of Streptomyces. V. Additional descriptions. Int J Syst Bacteriol 22:265-394
28. Nonomura H (1974) Key for classification and identification of 458 species of the streptomycetes included in ISP. J Ferment Technol 52:78-92
29. Stackebrandt E, Goebel BM (1994) A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846-849
30. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE, Stackebrandt E, Starr MP, Trüper HG (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463-464
31. Shimbo K, Iwasaki Y, Yamane T, Ina K (1993) Purification and properties of phospholipase D from Streptomyces antibioticus. Biosci Biotechnol Biochem 57:1946-1948
32. Shimbo K, Yano H, Miyamoto Y (1989) Two Streptomyces strains that produce phospholipase D with high transphosphatidylation activity. Agric Biol Chem 53:3083-3085
33. Carrea G, D'Arrigo P, Piergianni V, Roncaglio S, Secundo F, Servi S (1995) Purification and properties of two phospholipases D from Streptomyces sp. Biochim Biophys Acta 1255:273-279
34. Ogino C, Negi Y, Matsumiya T, Nakaoka K, Kondo A, Kuroda S, Tokuyama S, Kikkawa U, Yamane T, Fukuda H (1999) Purification, characterization, and sequence determination of phospholipase D secreted by Streptoverticillium cinnamoneum. J Biochem 125:263-269
35. Hatanaka T, Negishi T, Kubota-Akizawa M, Hagishita T (2002) Purification, characterization, cloning and sequencing of phospholipase D from Streptomyces septatus TH-2. Enzyme Microb Technol 31:233-241
36. Hagishita T, Nishikawa M, Hatanaka T (2000) Isolation of phospholipase D producing microorganisms with high transphosphatidylation activity. Biotechnol Lett 22:1587-1590
37. Juneja LR, Kazuoka T, Yamane T, Shimizu S (1988) Kinetic evaluation of conversion of phosphatidylcholine to phosphatidylethanolamine by phospholipase D from different sources. Biochim Biophys Acta 960:334-341
38. Juneja LR, Kazuoka T, Goto N, Yamane T, Shimizu S (1989) Conversion of phosphatidylcholine to phosphatidylserine by various phospholipase D in the presence of L-or D-serine. Biochim Biophys Acta 1003:277-283
39. Yu CH, Liu SY, Panagia V (1996) The transphosphatidylation activity of phospholipase D. Mol Cell Biochem 157:101-105
40. Ogino C, Daido H, Ohmura Y, Takada N, Itou Y, Kondo A, Fukuda H, Shimizu N (2007) Remarkable enhancement in PLD activity from Streptoverticillium cinnamoneum by substituting serine residue into the GG/GS motif. Biochim Biophys Acta 1774:671-678