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Volumn 587, Issue , 2010, Pages 113-126

Mapping genomic targets of DNA helicases by chromatin immunoprecipitation in saccharomyces cerevisiae

Author keywords

chromatin immunoprecipitation (ChIP); DNA helicases; DNA repair; DNA replication; Saccharomyces cerevisiae

Indexed keywords

SACCHAROMYCES CEREVISIAE;

EID: 77953015449     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-60327-355-8_8     Document Type: Article
Times cited : (10)

References (21)
  • 1
    • 39049098269 scopus 로고    scopus 로고
    • Yeast Rvb1 and Rvb2 are ATP-dependent DNA helicases that form a heterohexameric complex
    • Gribun A., Cheung K. L., Huen J., Ortega J., and Houry W. A. (2008) Yeast Rvb1 and Rvb2 are ATP-dependent DNA helicases that form a heterohexameric complex. J. Mol. Biol. 376, 1320-1333.
    • (2008) J. Mol. Biol. , vol.376 , pp. 1320-1333
    • Gribun, A.1    Cheung, K.L.2    Huen, J.3    Ortega, J.4    Houry, W.A.5
  • 2
    • 0034601464 scopus 로고    scopus 로고
    • A chromatin remodelling complex involved in transcription and DNA processing
    • DOI 10.1038/35020123
    • Shen X., Mizuguchi G., Hamiche A., and Wu C. (2000) A chromatin remodelling complex involved in transcription and DNA processing. Nature 406, 541-544. (Pubitemid 30625741)
    • (2000) Nature , vol.406 , Issue.6795 , pp. 541-544
    • Shen, X.1    Mizuguchi, G.2    Hamiche, A.3    Carl, W.4
  • 3
    • 0348184963 scopus 로고    scopus 로고
    • ATP-Driven Exchange of Histone H2AZ Variant Catalyzed by SWR1 Chromatin Remodeling Complex
    • DOI 10.1126/science.1090701
    • Mizuguchi G., Shen X., Landry J., Wu W. H., Sen S., and Wu C. (2004) ATPdriven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 303, 343-348. (Pubitemid 38095768)
    • (2004) Science , vol.303 , Issue.5656 , pp. 343-348
    • Mizuguchi, G.1    Shen, X.2    Landry, J.3    Wu, W.-H.4    Sen, S.5    Wu, C.6
  • 5
    • 19344372948 scopus 로고    scopus 로고
    • A protein complex containing the conserved Swi2/ Snf2-related ATPase Swr1p deposits histone variant H2A.Z into euchromatin
    • Kobor M. S., Venkatasubrahmanyam S., Meneghini M. D., et al. (2004) A protein complex containing the conserved Swi2/ Snf2-related ATPase Swr1p deposits histone variant H2A.Z into euchromatin. PLoS Biol. 2, E131.
    • (2004) PLoS Biol. , vol.2
    • Kobor, M.S.1    Venkatasubrahmanyam, S.2    Meneghini, M.D.3
  • 6
    • 10944233962 scopus 로고    scopus 로고
    • Recruitment of the INO80 complex by H2A phosphorylation links ATP-dependent chromatin remodeling with DNA double-strand break repair
    • DOI 10.1016/j.cell.2004.11.033, PII S0092867404011018
    • van Attikum H., Fritsch O., Hohn B., and Gasser S. M. (2004) Recruitment of the INO80 complex by H2A phosphorylation links ATP-dependent chromatin remodeling with DNA double-strand break repair. Cell 119, 777-788. (Pubitemid 40017685)
    • (2004) Cell , vol.119 , Issue.6 , pp. 777-788
    • Van Attikum, H.1    Fritsch, O.2    Hohn, B.3    Gasser, S.M.4
  • 7
    • 10944224673 scopus 로고    scopus 로고
    • INO80 and γ-H2AX interaction links ATP-dependent chromatin remodeling to DNA damage repair
    • DOI 10.1016/j.cell.2004.11.037, PII S0092867404011055
    • Morrison A. J., Highland J., Krogan N. J., et al. (2004) INO80 and gamma-H2AX interaction links ATP-dependent chromatin remodeling to DNA damage repair. Cell 119, 767-775. (Pubitemid 40017684)
    • (2004) Cell , vol.119 , Issue.6 , pp. 767-775
    • Morrison, A.J.1    Highland, J.2    Krogan, N.J.3    Arbel-Eden, A.4    Greenblatt, J.F.5    Haber, J.E.6    Shen, X.7
  • 8
    • 34648834736 scopus 로고    scopus 로고
    • Distinct roles for SWR1 and INO80 chromatin remodeling complexes at chromosomal double-strand breaks
    • DOI 10.1038/sj.emboj.7601835, PII 7601835
    • van Attikum H., Fritsch O., and Gasser S. M. (2007) Distinct roles for SWR1 and INO80 chromatin remodeling complexes at chromosomal double-strand breaks. EMBO J. 26, 4113-4125. (Pubitemid 47462094)
    • (2007) EMBO Journal , vol.26 , Issue.18 , pp. 4113-4125
    • Van Attikum, H.1    Fritsch, O.2    Gasser, S.M.3
  • 9
    • 42049094866 scopus 로고    scopus 로고
    • Ino80 chromatin remodeling complex promotes recovery of stalled replication forks
    • Shimada K., Oma Y., Schleker T., et al. (2008) Ino80 chromatin remodeling complex promotes recovery of stalled replication forks. Curr. Biol. 18, 566-575.
    • (2008) Curr. Biol. , vol.18 , pp. 566-575
    • Shimada, K.1    Oma, Y.2    Schleker, T.3
  • 10
    • 41649111513 scopus 로고    scopus 로고
    • The Ino80 chromatin-remodeling enzyme regulates replisome function and stability
    • DOI 10.1038/nsmb.1413, PII NSMB1413
    • Papamichos-Chronakis M., and Peterson C. L. (2008) The Ino80 chromatin-remodeling enzyme regulates replisome function and stability. Nat. Struct. Mol. Biol. 15, 338-345. (Pubitemid 351483399)
    • (2008) Nature Structural and Molecular Biology , vol.15 , Issue.4 , pp. 338-345
    • Papamichos-Chronakis, M.1    Peterson, C.L.2
  • 11
    • 8644257491 scopus 로고    scopus 로고
    • Rvb1p/Rvb2p recruit Arp5p and assemble a functional Ino80 chromatin remodeling complex
    • DOI 10.1016/j.molcel.2004.09.033, PII S1097276504005854
    • Jonsson Z. O., Jha S., Wohlschlegel J. A., and Dutta A. (2004) Rvb1p/Rvb2p recruit Arp5p and assemble a functional Ino80 chromatin remodeling complex. Mol. Cell. 16, 465-477. (Pubitemid 39504799)
    • (2004) Molecular Cell , vol.16 , Issue.3 , pp. 465-477
    • Jonsson, Z.O.1    Jha, S.2    Wohlschlegel, J.A.3    Dutta, A.4
  • 12
    • 14344265036 scopus 로고    scopus 로고
    • The Mcm467 complex of Saccharomyces cerevisiae is preferentially activated by autonomously replicating DNA sequences
    • DOI 10.1021/bi0491649
    • Biswas-Fiss E. E., Khopde S. M., and Biswas S. B. (2005) The Mcm467 complex of Saccharomyces cerevisiae is preferentially activated by autonomously replicating DNA sequences. Biochemistry 44, 2916-2925. (Pubitemid 40293666)
    • (2005) Biochemistry , vol.44 , Issue.8 , pp. 2916-2925
    • Biswas-Fiss, E.E.1    Khopde, S.M.2    Biswas, S.B.3
  • 13
    • 0038475879 scopus 로고    scopus 로고
    • Reconstitution of the Mcm2-7p heterohexamer, subunit arrangement, and ATP site architecture
    • DOI 10.1074/jbc.M210511200
    • Davey M. J., Indiani C., and O'Donnell M. (2003) Reconstitution of the Mcm2-7p heterohexamer, subunit arrangement, and ATP site architecture. J. Biol. Chem. 278, 4491-4499. (Pubitemid 36800944)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.7 , pp. 4491-4499
    • Davey, M.J.1    Indiani, C.2    O'Donnell, M.3
  • 14
    • 33644872122 scopus 로고    scopus 로고
    • MCM proteins and DNA replication
    • DOI 10.1016/j.ceb.2006.02.006, PII S0955067406000251, Cell Regulation
    • Maiorano D., Lutzmann M., and Mechali M. (2006) MCM proteins and DNA replication. Curr. Opin. Cell. Biol. 18, 130-136. (Pubitemid 43375879)
    • (2006) Current Opinion in Cell Biology , vol.18 , Issue.2 , pp. 130-136
    • Maiorano, D.1    Lutzmann, M.2    Mechali, M.3
  • 15
    • 0030886099 scopus 로고    scopus 로고
    • Components and dynamics of DNA replication complexes in S. cerevisiae: Redistribution of MCM proteins and Cdc45p during S phase
    • DOI 10.1016/S0092-8674(01)80009-X
    • Aparicio O. M., Weinstein D. M., and Bell S. P. (1997) Components and dynamics of DNA replication complexes in Saccharomyces cerevisiae: redistribution ofMCMproteins and Cdc45p during S phase. Cell 91, 59-69. (Pubitemid 27431313)
    • (1997) Cell , vol.91 , Issue.1 , pp. 59-69
    • Aparicio, O.M.1    Weinstein, D.M.2    Bell, S.P.3
  • 16
    • 0042466524 scopus 로고    scopus 로고
    • DNA polymerase stabilization at stalled replication forks requires Mec1 and the RecQ helicase Sgs1
    • DOI 10.1093/emboj/cdg391
    • Cobb J. A., Bjergbaek L., Shimada K., Frei C., and Gasser S. M. (2003) DNA polymerase stabilization at stalled replication forks requires Mec1 and the RecQ helicase Sgs1. EMBO J. 22, 4325-4336. (Pubitemid 37021759)
    • (2003) EMBO Journal , vol.22 , Issue.16 , pp. 4325-4336
    • Cobb, J.A.1    Bjergbaek, L.2    Shimada, K.3    Frei, C.4    Gasser, S.M.5
  • 17
    • 13444283383 scopus 로고    scopus 로고
    • Mechanistically distinct roles for Sgs1p in checkpoint activation and replication fork maintenance
    • DOI 10.1038/sj.emboj.7600511
    • Bjergbaek L., Cobb J. A., Tsai-Pflugfelder M., and Gasser S. M. (2005) Mechanistically distinct roles for Sgs1p in checkpoint activation and replication fork maintenance. EMBO J. 24, 405-417. (Pubitemid 40216144)
    • (2005) EMBO Journal , vol.24 , Issue.2 , pp. 405-417
    • Bjergbaek, L.1    Cobb, J.A.2    Tsai-Pflugfelder, M.3    Gasser, S.M.4
  • 18
    • 29144486147 scopus 로고    scopus 로고
    • Replisome instability, fork collapse, and gross chromosomal rearrangements arise synergistically from Mec1 kinase and RecQ helicase mutations
    • DOI 10.1101/gad.361805
    • Cobb J. A., Schleker T., Rojas V., Bjergbaek L., Tercero J. A., and Gasser S. M. (2005) Replisome instability, fork collapse, and gross chromosomal rearrangements arise synergistically from Mec1 kinase and RecQ helicase mutations. Genes Dev. 19, 3055-3069. (Pubitemid 41798120)
    • (2005) Genes and Development , vol.19 , Issue.24 , pp. 3055-3069
    • Cobb, J.A.1    Schleker, T.2    Rojas, V.3    Bjergbaek, L.4    Tercero, J.A.5    Gasser, S.M.6
  • 19
    • 0032493889 scopus 로고    scopus 로고
    • Saccharomyces Ku70, Mre11/Rad50, and RPA proteins regulate adaptation to G2/M arrest after DNA damage
    • DOI 10.1016/S0092-8674(00)81482-8
    • Lee S. E., Moore J. K., Holmes A., Umezu K., Kolodner R. D., and Haber J. E. (1998) Saccharomyces Ku70, mre11/rad50 and RPA proteins regulate adaptation to G2/ M arrest after DNA damage. Cell 94, 399-409. (Pubitemid 28376083)
    • (1998) Cell , vol.94 , Issue.3 , pp. 399-409
    • Lee, S.E.1    Moore, J.K.2    Holmes, A.3    Umezu, K.4    Kolodner, R.D.5    Haber, J.E.6
  • 20
    • 38349006294 scopus 로고    scopus 로고
    • The processing of double-strand breaks and binding of single-strand-binding proteins RPA and Rad51 modulate the formation of ATRkinase foci in yeast
    • Dubrana K., van Attikum H., Hediger F., and Gasser S. M. (2007) The processing of double-strand breaks and binding of single-strand-binding proteins RPA and Rad51 modulate the formation of ATRkinase foci in yeast. J. Cell. Sci. 120, 4209-4220.
    • (2007) J. Cell. Sci. , vol.120 , pp. 4209-4220
    • Dubrana, K.1    Van Attikum, H.2    Hediger, F.3    Gasser, S.M.4
  • 21
    • 33644860985 scopus 로고    scopus 로고
    • The use of biotin tagging in Saccharomyces cerevisiae improves the sensitivity of chromatin immunoprecipitation
    • van Werven F. J., and Timmers H. T. (2006) The use of biotin tagging in Saccharomyces cerevisiae improves the sensitivity of chromatin immunoprecipitation. Nucleic Acids Res. 34, e33.
    • (2006) Nucleic Acids Res. , vol.34
    • Van Werven, F.J.1    Timmers, H.T.2


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