Conserved 3′-untranslated region sequences direct subcellular localization of chaperone protein mRNAs in neurons

Journal of Biological Chemistry

Volumn 285, Issue 23, 2010, Pages 18025-18038

  Vuppalanchi, Deepika ^a   Coleman, Jennifer ^a   Yoo, Soonmoon ^a   Merianda, Tanuja T ^a   Yadhati, Akshay G ^a   Hossain, Jobayer ^a   Blesch, Armin ^c   Willis, Dianna E ^b   Twiss, Jeffery L ^d  

^a UNIVERSITY OF DELAWARE   (United States)

^b NEMOURS ALFRED I DUPONT HOSPITAL FOR CHILDREN   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d DREXEL UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CALRETICULIN; CELL BODIES; CONSERVED REGIONS; ENDOPLASMIC RETICULUM CHAPERONE; LOCALIZATION ELEMENT; NEURONAL PROCESS; NEUROTROPHIN-3; ORTHOLOGS; POLARIZED CELLS; RENEWABLE SOURCES; SEQUENCE IDENTITY; SUBCELLULAR LOCALIZATIONS; UNTRANSLATED REGION SEQUENCES; UNTRANSLATED REGIONS;

DENDRIMERS; MAMMALS; NEURONS; RNA;

PROTEINS;

ALPHA CRYSTALLIN; BETA CRYSTALLIN; CALRETICULIN; CHAPERONE; GLUCOSE REGULATED PROTEIN 78; HEAT SHOCK PROTEIN 60; HEAT SHOCK PROTEIN 90; MESSENGER RNA; MYELIN ASSOCIATED GLYCOPROTEIN; NEUROTROPHIN 3; STRESS ACTIVATED PROTEIN KINASE; DNA; NERVE GROWTH FACTOR;

3' UNTRANSLATED REGION; ANIMAL CELL; ARTICLE; CELL POLARITY; CELLULAR DISTRIBUTION; CONTROLLED STUDY; DENDRITE; EMBRYO; ENDOPLASMIC RETICULUM; ENZYME ACTIVATION; FLUORESCENCE IN SITU HYBRIDIZATION; FLUORESCENCE RECOVERY AFTER PHOTOBLEACHING; GENETIC CONSERVATION; MAMMAL; NERVE CELL; NERVE FIBER; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PREDICTION; PRIORITY JOURNAL; PROTEIN LOCALIZATION; RAT; RELIABILITY; RNA TRANSLATION; RNA TRANSPORT; SEQUENCE HOMOLOGY; ANIMAL; CELL FRACTIONATION; GENETICS; IN SITU HYBRIDIZATION; METABOLISM; SPINAL GANGLION;

MAMMALIA;

3' UNTRANSLATED REGIONS; ANIMALS; CALRETICULIN; DNA; ENDOPLASMIC RETICULUM; FLUORESCENCE RECOVERY AFTER PHOTOBLEACHING; GANGLIA, SPINAL; IN SITU HYBRIDIZATION; MOLECULAR CHAPERONES; MYELIN-ASSOCIATED GLYCOPROTEIN; NERVE GROWTH FACTORS; NEURONS; NEUROTROPHIN 3; RATS; RNA, MESSENGER; SUBCELLULAR FRACTIONS;

EID: 77952923636     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.061333     Document Type: Article

References (59)

1. Besse, F., and Ephrussi, A. (2008) Nat. Rev. Mol. Cell Biol. 9, 971-980
2. Shestakova, E. A., Singer, R. H., and Condeelis, J. (2001) Proc. Natl. Acad. Sci. U.S.A. 98, 7045-7050
3. Adereth, Y., Dammai, V., Kose, N., Li, R., and Hsu, T. (2005) Nat. Cell Biol. 7, 1240-1247
4. Bramham, C. R., and Wells, D. G. (2007) Nat. Rev. Neurosci. 8, 776-789
5. Lin, A. C., and Holt, C. E. (2008) Curr. Opin. Neurobiol. 18, 60-68
6. Willis, D. E., and Twiss, J. L. (2006) Curr. Opin. Neurobiol. 16, 111-118
7. Willis, D. E., van Niekerk, E. A., Sasaki, Y., Mesngon, M., Merianda, T. T., Williams, G. G., Kendall, M., Smith, D. S., Bassell, G. J., and Twiss, J. L. (2007) J. Cell Biol. 178, 965-980
8. Taylor, A. M., Berchtold, N. C., Perreau, V. M., Tu, C. H., Li Jeon, N., and Cotman, C. W. (2009) J. Neurosci. 29, 4697-4707
9. Vogelaar, C. F., Gervasi, N. M., Gumy, L. F., Story, D. J., Raha-Chowdhury, R., Leung, K. M., Holt, C. E., and Fawcett, J. W. (2009) Mol. Cell. Neurosci. 42, 102-115
10. Poon, M. M., Choi, S. H., Jamieson, C. A., Geschwind, D. H., and Martin, K. C. (2006) J. Neurosci. 26, 13390-13399
11. Matsumoto, M., Setou, M., and Inokuchi, K. (2007) Neurosci. Res. 57, 411-423
12. Bassell, G. J., Zhang, H., Byrd, A. L., Femino, A. M., Singer, R. H., Taneja, K. L., Lifshitz, L. M., Herman, I. M., and Kosik, K. S. (1998) J. Neurosci. 18, 251-265
13. Tiruchinapalli, D. M., Oleynikov, Y., Kelic, S., Shenoy, S. M., Hartley, A., Stanton, P. K., Singer, R. H., and Bassell, G. J. (2003) J. Neurosci. 23, 3251-3261
14. Zheng, J. Q., Kelly, T. K., Chang, B., Ryazantsev, S., Rajasekaran, A. K., Martin, K. C., and Twiss, J. L. (2001) J. Neurosci. 21, 9291-9303
15. Garner, C. C., Tucker, R. P., and Matus, A. (1988) Nature 336, 674-677
16. Aronov, S., Aranda, G., Behar, L., and Ginzburg, I. (2001) J. Neurosci. 21, 6577-6587
17. Lu, R., Wang, H., Liang, Z., Ku, L., O'donnell, W. T., Li, W., Warren, S. T., and Feng, Y. (2004) Proc. Natl. Acad. Sci. U.S.A. 101, 15201-15206
18. Antar, L. N., Li, C., Zhang, H., Carroll, R. C., and Bassell, G. J. (2006) Mol. Cell. Neurosci. 32, 37-48
19. Jambhekar, A., and Derisi, J. L. (2007) RNA 13, 625-642
20. Jansen, R. P. (2001) Nat. Rev. Mol. Cell Biol. 2, 247-256
21. Kiebler, M. A., and Bassell, G. J. (2006) Neuron 51, 685-690
22. Kislauskis, E. H., Li, Z., Singer, R. H., and Taneja, K. L. (1993) J. Cell Biol. 123, 165-172
23. Farina, K. L., Huttelmaier, S., Musunuru, K., Darnell, R., and Singer, R. H. (2003) J. Cell Biol. 160, 77-87
24. Wells, D. G. (2006) J. Neurosci. 26, 7135-7138
25. Twiss, J. L., Smith, D. S., Chang, B., and Shooter, E. M. (2000) Neurobiol. Dis. 7, 416-428
26. Goslin, K., Banker, G., and Asmussen, H. (1998) in Culturing Nerve Cells (Banker, G., and Goslin, K., eds) 2nd Ed., pp. 339-370, MIT Press, Cambridge, MA
27. März, P., Cheng, J. G., Gadient, R. A., Patterson, P. H., Stoyan, T., Otten, U., and Rose-John, S. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 3251-3256
28. An, J. J., Gharami, K., Liao, G. Y., Woo, N. H., Lau, A. G., Vanevski, F., Torre, E. R., Jones, K. R., Feng, Y., Lu, B., and Xu, B. (2008) Cell 134, 175-187
29. Yudin, D., Hanz, S., Yoo, S., Iavnilovitch, E., Willis, D., Gradus, T., Vuppalanchi, D., Segal-Ruder, Y., Ben-Yaakov, K., Hieda, M., Yoneda, Y., Twiss, J. L., and Fainzilber, M. (2008) Neuron 59, 241-252
30. Willis, D., Li, K. W., Zheng, J. Q., Chang, J. H., Smit, A., Kelly, T., Merianda, T. T., Sylvester, J., van Minnen, J., and Twiss, J. L. (2005) J. Neurosci. 25, 778-791
31. Sotelo-Silveira, J., Crispino, M., Puppo, A., Sotelo, J. R., and Koenig, E. (2008) J. Neurochem. 104, 545-557
32. Yamauchi, J., Chan, J. R., and Shooter, E. M. (2003) Proc. Natl. Acad. Sci. U.S.A. 100, 14421-14426
33. Aakalu, G., Smith, W. B., Nguyen, N., Jiang, C., and Schuman, E. M. (2001) Neuron 30, 489-502
34. Jacobson, C., Schnapp, B., and Banker, G. A. (2006) Neuron 49, 797-804
35. Smith, D. S., and Skene, J. H. (1997) J. Neurosci. 17, 646-658
36. Ochs, S. (1972) Science 176, 252-260
37. Jirikowski, G. F., Sanna, P. P., and Bloom, F. E. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 7400-7404
38. Mohr, E., and Richter, D. (1992) Eur. J. Neurosci. 4, 870-876
39. Tiedge, H., Zhou, A., Thorn, N. A., and Brosius, J. (1993) J. Neurosci. 13, 4214-4219
40. Wensley, C. H., Stone, D. M., Baker, H., Kauer, J. S., Margolis, F. L., and Chikaraishi, D. M. (1995) J. Neurosci. 15, 4827-4837
41. Mendez, R., and Richter, J. D. (2001) Nat. Rev. Mol. Cell Biol. 2, 521-529
42. Hüttelmaier, S., Zenklusen, D., Lederer, M., Dictenberg, J., Lorenz, M., Meng, X., Bassell, G. J., Condeelis, J., and Singer, R. H. (2005) Nature 438, 512-515
43. Vuppalanchi, D., Willis, D. E., and Twiss, J. L. (2009) Results Probl. Cell Differ. 48, 193-224
44. Jønson, L., Vikesaa, J., Krogh, A., Nielsen, L. K., Hansen, T., Borup, R., Johnsen, A. H., Christiansen, J., and Nielsen, F. C. (2007) Mol. Cell. Proteomics 6, 798-811
45. Colegrove-Otero, L. J., Minshall, N., and Standart, N. (2005) Crit. Rev. Biochem. Mol. Biol. 40, 21-73
46. Mayford, M., Baranes, D., Podsypanina, K., and Kandel, E. R. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 13250-13255
47. Blichenberg, A., Schwanke, B., Rehbein, M., Garner, C. C., Richter, D., and Kindler, S. (1999) J. Neurosci. 19, 8818-8829
48. Muslimov, I. A., Nimmrich, V., Hernandez, A. I., Tcherepanov, A., Sacktor, T. C., and Tiedge, H. (2004) J. Biol. Chem. 279, 52613-52622
49. Davidkova, G., and Carroll, R. C. (2007) J. Neurosci. 27, 13273-13278
50. Crino, P. B., and Eberwine, J. (1996) Neuron 17, 1173-1187
51. Gavis, E. R., and Lehmann, R. (1992) Cell 71, 301-313
52. Gavis, E. R., Lunsford, L., Bergsten, S. E., and Lehmann, R. (1996) Development 122, 2791-2800
53. Ainger, K., Avossa, D., Diana, A. S., Barry, C., Barbarese, E., and Carson, J. H. (1997) J. Cell Biol. 138, 1077-1087
54. Oliva, A. A., Jr., Atkins, C. M., Copenagle, L., and Banker, G. A. (2006) J. Neurosci. 26, 9462-9470
55. Kenney, A. M., and Kocsis, J. D. (1998) J. Neurosci. 18, 1318-1328
56. Cavalli, V., Kujala, P., Klumperman, J., and Goldstein, L. S. (2005) J. Cell Biol. 168, 775-787
57. Reichardt, L. F. (2006) Philos. Trans. R. Soc. Lond. B. Biol. Sci. 361, 1545-1564
58. Wang, K. C., Kim, J. A., Sivasankaran, R., Segal, R., and He, Z. (2002) Nature 420, 74-78
59. Wong, S. T., Henley, J. R., Kanning, K. C., Huang, K. H., Bothwell, M., and Poo, M. M. (2002) Nat. Neurosci. 5, 1302-1308