Molecular crowding regulates the structural switch of the DNA G-quadruplex

Biochemistry

Volumn 41, Issue 50, 2002, Pages 15017-15024

  Miyoshi, Daisuke ^a   Nakao, Akihiro ^a   Sugimoto, Naoki ^a  

^a KONAN UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; ELECTROSTATICS; POLYETHYLENE GLYCOLS; POLYSACCHARIDES; PROTEINS;

MOLECULAR CROWDING;

BIOCHEMISTRY;

DNA; INORGANIC SALT; MACROGOL; NUCLEIC ACID; POLYCATION; POLYSACCHARIDE; PROTEIN; PUTRESCINE; SODIUM ION;

ARTICLE; BINDING AFFINITY; CHEMICAL INTERACTION; CONCENTRATION (PARAMETERS); DNA STRUCTURE; ELECTRICITY; ENTHALPY; ENTROPY; G QUADRUPLEX; MACROMOLECULE; MOLECULAR STABILITY; PRIORITY JOURNAL; THERMODYNAMICS;

ANIMALS; BIOPOLYMERS; CADAVERINE; CIRCULAR DICHROISM; DNA; DNA, PROTOZOAN; GLYCEROL; NUCLEIC ACID CONFORMATION; NUCLEIC ACID HETERODUPLEXES; OXYTRICHA; POLYAMINES; POLYETHYLENE GLYCOLS; PUTRESCINE; SPERMINE; THERMODYNAMICS; TITRIMETRY;

EID: 0037126694     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi020412f     Document Type: Article

References (45)

1. Minton, A. P. (2001) J. Biol. Chem. 276, 10577-10580.
2. Ellis, R. J. (2001) Curr. Opin. Struct. Biol. 11, 114-119.
3. Davis-Searles, P. R., Saunders, A. J., Erie, D. A., Winzor, D. J., and Pielak, G. J. (2001) Annu. Rev. Biophys. Biomol. Struct. 30, 271-306.
4. Berg, O. (1990) Biopolymers 30, 1027-1037.
5. Liu, Y., and Bolen, D. W. (1995) Biochemistry 34, 12884-12891.
6. Winzor, D. J., and Wills, P. R. (1995) Protein-Solvent Interactions (Gregory, R. B., Ed.) pp 483-520. Marcel Dekker, New York.
7. Parsegian, V. A., Rand, R. P., and Rau, D. C. (2000) Proc. Natl. Acad. Sci. U.S.A. 97, 3987-3992.
8. Minton, A. P. (2000) Curr. Opin. Struct. Biol. 10, 34-39.
9. Flaugh, S. L., and Lumb, K. J. (2001) Biomacromolecules 2, 538-540.
10. Hatters, D. M., Minton, A. P., and Howlett, G. J. (2002) J. Biol. Chem. 277, 7824-7830.
11. Martin, J. (2002) Biochemistry 41, 5050-5055.
12. Spink, C. H., and Chaires, J. B. (1995) J. Am. Chem. Soc. 117, 12887-12888.
13. Goobes, R., and Minsky, A. (2001) J. Am. Chem. Soc. 123, 12692-12693.
14. Williamson, J. R., Raghuraman, M. K., and Cech, T. R. (1989) Cell 59, 871-880.
15. Blackburn, E. H., and Greider, C. W. (1995) Telomeres, Cold Spring Harbor Press, Cold Spring Harbor, NY.
16. Daniels, G. A., and Lieber, M. R. (1995) Proc. Natl. Acad Sci. U.S.A. 92, 5625-5629.
17. Fry, M., and Loeb, L. A. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 4950-4954.
18. Simonson, T., Pecinka, P., and Kubista, M. (1998) Nucleic Acids Res. 26, 1167-1172.
19. Keniry, M. A. (2001) Biopolymers 56, 123-146.
20. Miyoshi, D., Nakao, A., and Sugimoto, N. (2001) FEBS Lett. 496, 128-133.
21. Sen, D., and Gilbert, W. (1990) Nature 344, 410-414.
22. Miura, T., Benevides, J. M., and Thomas G. J., Jr. (1995) J. Mol. Biol. 248, 233-238.
23. Schultze, P., Smith, F. W., and Feigon, J. (1994) Structure 2, 221-233.
24. Sugimoto, N., Nakano, M., and Nakano, S. (2000) Biochemistry 39, 11270-11281.
25. Balagurumoorthy, P., Brahmachari, S. K., Mohanty, D., Bansal, M., and Sasisekharan, V. (1992) Nucleic Acids Res. 20, 4061- 4067.
26. Wyatt, J. R., Davis, P. D., and Freier, S. M. (1996) Biochemistry 35, 8002-8008.
27. Lu, M., Guo, Q., and Kallenbach, N. R. (1993) Biochemistry 32, 598-601.
28. Petersheim, M., and Turner, D. H. (1983) Biochemistry 22, 256-263.
29. Sugimoto, N., Nakano, S., Katoh, S., Matsumura, A., Nakamuta, H., Ohmichi, T., Yonayama, M., and Sasaki, M. (1995) Biochemistry 34, 11211-11216.
30. Lerman, L. S. (1971) Proc. Natl. Acad. Sci. U.S.A. 68, 1886- 1890.
31. Lerman, L. S. (1973) in Physico-Chemical Properties of Nucleic Acids (Duchesne, J., Ed.) 3rd ed., pp 59-76, Academic, New York.
32. Kidokura, S., and Yoshikawa, K. (1999) Biophys. Chem. 76, 133-143.
33. Mayama, H., Iwataki, T., and Yoshikawa, K. (2000) Chem. Phys. Lett. 318, 113-117.
34. Wang, Y., and Patel, D. J. (1995) J. Mol. Biol. 251, 76-94.
35. Ellis, R. J. (2001) Curr. Opin. Struct. Biol, 11, 114-119.
36. Minton, A. P. (1983) Mol. Cell. Biochem. 22, 27-65.
37. Minton, A. P. (1997) Curr. Opin. Biotechnol. 8, 65-69.
38. Morar, A. S., Wang, X., and Pielak, G. J. (2001) Biochemistry 40, 281-285.
39. Morar, A. S. and Pielak, G. J. (2002) Biochemistry 41, 547-551.
40. Phillips, K., Dauter, Z., Murchie, A. I. H., Lilley, D. M. J., and Luisi, B. (1997) J. Mol. Biol. 273, 171-182.
41. Minton, A. P. (1981) Biopolymers 20, 2093-2120.
42. Wenner, J. R., and Bloomfield, V. A. (1999) Biophys. J. 77, 3234-3241.
43. Takahashi, Y., Kuro-o, M., and Ishikawa, F. (2000) Proc. Natl. Acad. Sci. U.S.A. 97, 12407-12408.
44. Shtileman, M. D., Ding, T. T., and Lansbury, P. T., Jr. (2002) Biochemisry 41, 3855-1860.
45. Conlon, I. J., Dunn, G. A., Mudge, A. W., and Raff, M. C. (2001) Nat. Cell Biol. 3, 918-921.