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Volumn 26, Issue 10, 2010, Pages 1332-1339

An integer programming formulation to identify the sparse network architecture governing differentiation of embryonic stem cells

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EID: 77952795515     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq139     Document Type: Article
Times cited : (8)

References (31)
  • 1
    • 33645307955 scopus 로고    scopus 로고
    • Inference of gene regulatory networks and compound mode of action from time course gene expression profiles
    • Bansal, M. et al. (2006) Inference of gene regulatory networks and compound mode of action from time course gene expression profiles. Bioinformatics, 22, 815-822.
    • (2006) Bioinformatics , vol.22 , pp. 815-822
    • Bansal, M.1
  • 2
    • 0035907378 scopus 로고    scopus 로고
    • A pancreatic β-cell-specific enhancer in the human Pdx- 1 gene is regulated by HNF-3β, HNF-1α, and SPs transcription factors
    • Ben-Shushan, E. et al. (2001) A pancreatic β-cell-specific enhancer in the human Pdx- 1 gene is regulated by HNF-3β, HNF-1α, and SPs transcription factors. J. Biol. Chem., 276, 17533-17540.
    • (2001) J. Biol. Chem. , vol.276 , pp. 17533-17540
    • Ben-Shushan, E.1
  • 3
    • 22344449669 scopus 로고    scopus 로고
    • Constructing transcriptional regulatory networks
    • Blais, A. et al. (2005) Constructing transcriptional regulatory networks. Genes Dev., 19, 1499-1511.
    • (2005) Genes Dev. , vol.19 , pp. 1499-1511
    • Blais, A.1
  • 4
    • 0042424655 scopus 로고    scopus 로고
    • Transcriptional regulatory cascades in development: initial rates, not steady state, determine network kinetics
    • Bolouri, H. and Davidson, E.H. (2003) Transcriptional regulatory cascades in development: initial rates, not steady state, determine network kinetics. Proc. Natl Acad. Sci. USA, 100, 9371-9376.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 9371-9376
    • Bolouri, H.1    Davidson, E.H.2
  • 5
    • 33845270456 scopus 로고    scopus 로고
    • Transcription factors regulating beta cell function
    • Cerf, M.E. (2006)Transcription factors regulating beta cell function. Eur. J. Endocrinol., 155, 671-679.
    • (2006) Eur. J. Endocrinol. , vol.155 , pp. 671-679
    • Cerf, M.E.1
  • 6
    • 40449118677 scopus 로고    scopus 로고
    • Homogenous differentiation of hepaocyte-like cells from embryonic stem cells: applications for the treatment of liver failure
    • Cho, C.H. et al. (2008) Homogenous differentiation of hepaocyte-like cells from embryonic stem cells: applications for the treatment of liver failure. FASEB J., 22, 898.
    • (2008) FASEB J , vol.22 , pp. 898
    • Cho, C.H.1
  • 8
    • 0036500609 scopus 로고    scopus 로고
    • A genomic regulatory network for development
    • Davidson, E.H. et al. (2002) A genomic regulatory network for development. Science, 295, 1669-1678.
    • (2002) Science , vol.295 , pp. 1669-1678
    • Davidson, E.H.1
  • 9
    • 0041819709 scopus 로고    scopus 로고
    • Binary spiking in auditory cortex
    • DeWeese, M. et al. (2003) Binary spiking in auditory cortex. J. Neurosci., 23, 7940-7949.
    • (2003) J. Neurosci. , vol.23 , pp. 7940-7949
    • DeWeese, M.1
  • 10
    • 59449085751 scopus 로고    scopus 로고
    • A mixed-integer optimization framework for the synthesis and analysis of regulatory networks
    • Foteinou, P. et al. (2009) A mixed-integer optimization framework for the synthesis and analysis of regulatory networks. J. Glob. Optim., 43, 263.
    • (2009) J. Glob. Optim. , vol.43 , pp. 263
    • Foteinou, P.1
  • 11
    • 0034652287 scopus 로고    scopus 로고
    • Neurogenin3 is required for the development of the four endorine cell lineages of the pancreas
    • Gradwohl, G. et al. (2000) Neurogenin3 is required for the development of the four endorine cell lineages of the pancreas. Proc. Natl Acad. Sci. USA, 97, 1607-1611
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 1607-1611
    • Gradwohl, G.1
  • 12
    • 14244266611 scopus 로고    scopus 로고
    • Minireview: transcription regulation in pancreatic development
    • Habener, J.F. et al. (2005) Minireview: transcription regulation in pancreatic development. Endocrinology, 146, 1025-1034.
    • (2005) Endocrinology , vol.146 , pp. 1025-1034
    • Habener, J.F.1
  • 13
    • 0036366689 scopus 로고    scopus 로고
    • Combining location and expression data for principled discovery of genetic regulatory network
    • Hartemink, A.J. et al. (2002) Combining location and expression data for principled discovery of genetic regulatory network. Pacific Symp. Biocomput., 7, 437-449.
    • (2002) Pacific Symp. Biocomput. , vol.7 , pp. 437-449
    • Hartemink, A.J.1
  • 14
    • 0037125977 scopus 로고    scopus 로고
    • Experimental control of pancreatic development and maintenance
    • Holland, A.M. et al. (2002) Experimental control of pancreatic development and maintenance. Proc. Natl Acad. Sci. USA, 99, 12236-12241.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 12236-12241
    • Holland, A.M.1
  • 15
    • 0032573227 scopus 로고    scopus 로고
    • Pancreas development is promoted by cyclopamine, a hedgehog signaling inhibitor
    • Kim, S.K. and Melton, D.A. (1998) Pancreas development is promoted by cyclopamine, a hedgehog signaling inhibitor. Proc. Natl Acad. Sci. USA, 95, 13036-13041.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 13036-13041
    • Kim, S.K.1    Melton, D.A.2
  • 16
    • 17044433055 scopus 로고    scopus 로고
    • Xenopus as a model system to study transcriptional regulatory networks
    • Koide, T. et al. (2005) Xenopus as a model system to study transcriptional regulatory networks. Proc. Natl Acad. Sci. USA, 102, 4943-4948.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 4943-4948
    • Koide, T.1
  • 19
    • 3142630279 scopus 로고    scopus 로고
    • Gene regulatory network controlling embryonic specificatoin in the sea urchin
    • Oliveri, P. and Davidson, E.H. (2004) Gene regulatory network controlling embryonic specificatoin in the sea urchin. Curr. Opin. Genet. Dev., 14, 351-360.
    • (2004) Curr. Opin. Genet. Dev. , vol.14 , pp. 351-360
    • Oliveri, P.1    Davidson, E.H.2
  • 21
    • 0037941585 scopus 로고    scopus 로고
    • Module networks: identifying regulatory modules and their condition- specific regulators from gene expression data
    • Segal, E. (2003) Module networks: identifying regulatory modules and their condition- specific regulators from gene expression data. Nat. Genet., 34, 166-176.
    • (2003) Nat. Genet. , vol.34 , pp. 166-176
    • Segal, E.1
  • 22
    • 0036772705 scopus 로고    scopus 로고
    • gene perturbation and intervention in probabilistic Boolean networks
    • Shmulevich, I. et al. (2002) gene perturbation and intervention in probabilistic Boolean networks. Bioinformatics, 18, 1319-1331.
    • (2002) Bioinformatics , vol.18 , pp. 1319-1331
    • Shmulevich, I.1
  • 23
    • 17044440153 scopus 로고    scopus 로고
    • Contingent gene regulatory networks and B cell fate specification
    • Singh, H. et al. (2005) Contingent gene regulatory networks and B cell fate specification. Proc. Natl Acad. Sci. USA, 102, 4949-4953.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 4949-4953
    • Singh, H.1
  • 24
    • 0346024328 scopus 로고    scopus 로고
    • Neurogenin3 activates the islet differentiation program while repressing its own expression
    • Smith, S.B. et al. (2004) Neurogenin3 activates the islet differentiation program while repressing its own expression. Mol. Endocrinol., 18, 142-149.
    • (2004) Mol. Endocrinol. , vol.18 , pp. 142-149
    • Smith, S.B.1
  • 25
    • 26444591973 scopus 로고    scopus 로고
    • Genomic regulatory networks and animal development
    • Stathopoulos, A. et al. (2005) Genomic regulatory networks and animal development. Dev. Cell, 9, 449-462.
    • (2005) Dev. Cell , vol.9 , pp. 449-462
    • Stathopoulos, A.1
  • 26
    • 0037687416 scopus 로고    scopus 로고
    • Reverse engineering gene networks: integrating genetic perturbations with dynamical modeling
    • Tegner, J. et al. (2003) Reverse engineering gene networks: integrating genetic perturbations with dynamical modeling. Proc. Natl Acad. Sci. USA, 100, 5944-5949
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 5944-5949
    • Tegner, J.1
  • 27
    • 0034681515 scopus 로고    scopus 로고
    • Sparse coding and decorrelation in primary visual cortex during natural vision
    • Vinje, W.E. and Gallant, J.L. (2000) Sparse coding and decorrelation in primary visual cortex during natural vision. Science, 287, 1273-1276.
    • (2000) Science , vol.287 , pp. 1273-1276
    • Vinje, W.E.1    Gallant, J.L.2
  • 28
    • 0036138322 scopus 로고    scopus 로고
    • 2 gene perturbations in fewer than n easy steps
    • 2 easy steps. Bioinformatics, 17, 1183-1197.
    • (2001) Bioinformatics , vol.17 , pp. 1183-1197
    • Wagner, A.1
  • 29
    • 0037931806 scopus 로고    scopus 로고
    • Distinct gene expression programs function in progenitor and mature islet cells
    • Watada, H. et al. (2003) Distinct gene expression programs function in progenitor and mature islet cells. J. Biol. Chem., 278, 17130-17140.
    • (2003) J. Biol. Chem. , vol.278 , pp. 17130-17140
    • Watada, H.1
  • 31
    • 0037197936 scopus 로고    scopus 로고
    • Reverse engineering gene networks using singular value decomposition and robust regression
    • Yeung, M.K.S. et al. (2002) Reverse engineering gene networks using singular value decomposition and robust regression. Proc. Natl Acad. Sci. USA, 99, 6163-6168.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 6163-6168
    • Yeung, M.K.S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.