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Volumn 1, Issue 9, 2009, Pages

ChIP'ing the mammalian genome: Technical advances and insights into functional elements

Author keywords

[No Author keywords available]

Indexed keywords

MYC PROTEIN; OCTAMER TRANSCRIPTION FACTOR 4; SMAD1 PROTEIN; STAT3 PROTEIN; TRANSCRIPTION FACTOR NANOG; TRANSCRIPTION FACTOR SOX2;

EID: 77952728121     PISSN: None     EISSN: 1756994X     Source Type: Journal    
DOI: 10.1186/gm89     Document Type: Review
Times cited : (16)

References (50)
  • 1
    • 7244245762 scopus 로고    scopus 로고
    • International Human Genome Sequencing Consortium, Finishing the euchromatic sequence of the human genome
    • International Human Genome Sequencing Consortium: Finishing the euchromatic sequence of the human genome. Nature 2004, 431:931-945.
    • (2004) Nature , vol.431 , pp. 931-945
  • 2
    • 7444260846 scopus 로고    scopus 로고
    • The ENCODE Project Consortium, The ENCODE (ENCyclo-pedia Of DNA Elements) Project
    • The ENCODE Project Consortium: The ENCODE (ENCyclo-pedia Of DNA Elements) Project. Science 2004, 306: 636-640.
    • (2004) Science , vol.306 , pp. 636-640
  • 4
    • 0033388858 scopus 로고    scopus 로고
    • In vivo cross-linking and immunoprecipita-tion for studying dynamic Protein:DNA associations in a chromatin environment
    • Kuo MH, Allis CD: In vivo cross-linking and immunoprecipita-tion for studying dynamic Protein:DNA associations in a chromatin environment. Methods 1999, 19:425-433.
    • (1999) Methods , vol.19 , pp. 425-433
    • Kuo, M.H.1    Allis, C.D.2
  • 5
    • 0025860626 scopus 로고
    • A simplified for-maldehyde fixation and immunoprecipitation technique for studying protein-DNA interactions
    • Dedon PC, Soults JA, Allis CD, Gorovsky MA: A simplified for-maldehyde fixation and immunoprecipitation technique for studying protein-DNA interactions. Anal Biochem 1991, 197: 83-90.
    • (1991) Anal Biochem , vol.197 , pp. 83-90
    • Dedon, P.C.1    Soults, J.A.2    Allis, C.D.3    Gorovsky, M.A.4
  • 6
    • 0035945567 scopus 로고    scopus 로고
    • Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
    • Iyer VR, Horak CE, Scafe CS, Botstein D, Snyder M, Brown PO: Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature 2001, 409:533-538.
    • (2001) Nature , vol.409 , pp. 533-538
    • Iyer, V.R.1    Horak, C.E.2    Scafe, C.S.3    Botstein, D.4    Snyder, M.5    Brown, P.O.6
  • 12
    • 0344022572 scopus 로고    scopus 로고
    • Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activ-ity
    • Ng HH, Robert F, Young RA, Struhl K: Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activ-ity. Mol Cell 2003, 11:709-719.
    • (2003) Mol Cell , vol.11 , pp. 709-719
    • Ng, H.H.1    Robert, F.2    Young, R.A.3    Struhl, K.4
  • 13
    • 2942518343 scopus 로고    scopus 로고
    • Mapping global histone acetylation patterns to gene expression
    • Kurdistani SK, Tavazoie S, Grunstein M: Mapping global histone acetylation patterns to gene expression. Cell 2004, 117: 721-733.
    • (2004) Cell , vol.117 , pp. 721-733
    • Kurdistani, S.K.1    Tavazoie, S.2    Grunstein, M.3
  • 14
    • 0019351449 scopus 로고
    • A new method for the isolation of rep-licative chromatin: selective deposition of histone on both new and old DNA
    • Jackson V, Chalkley R: A new method for the isolation of rep-licative chromatin: selective deposition of histone on both new and old DNA. Cell 1981, 23:121-134.
    • (1981) Cell , vol.23 , pp. 121-134
    • Jackson, V.1    Chalkley, R.2
  • 15
    • 1042272180 scopus 로고
    • Detecting protein-DNA interactions in vivo: distribution of RNA polymerase on specific bacterial genes
    • Gilmour DS, Lis JT: Detecting protein-DNA interactions in vivo: distribution of RNA polymerase on specific bacterial genes. Proc Natl Acad Sci U S A 1984, 81:4275-4279.
    • (1984) Proc Natl Acad Sci U S A , vol.81 , pp. 4275-4279
    • Gilmour, D.S.1    Lis, J.T.2
  • 16
    • 0019333216 scopus 로고
    • Isolation and identifi-cation of cross-links from formaldehyde-treated nucleic acids
    • Chaw YF, Crane LE, Lange P, Shapiro R: Isolation and identifi-cation of cross-links from formaldehyde-treated nucleic acids. Biochemistry 1980, 19:5525-5531.
    • (1980) Biochemistry , vol.19 , pp. 5525-5531
    • Chaw, Y.F.1    Crane, L.E.2    Lange, P.3    Shapiro, R.4
  • 17
    • 0001473216 scopus 로고
    • Formaldehyde-mediated DNA-protein crosslinking: a probe for in vivo chromatin struc-tures
    • Solomon MJ, Varshavsky A: Formaldehyde-mediated DNA-protein crosslinking: a probe for in vivo chromatin struc-tures. Proc Natl Acad Sci U S A 1985, 82:6470-6474.
    • (1985) Proc Natl Acad Sci U S A , vol.82 , pp. 6470-6474
    • Solomon, M.J.1    Varshavsky, A.2
  • 18
    • 0034161329 scopus 로고    scopus 로고
    • Mapping chromosomal proteins in vivo by for-maldehyde-crosslinked-chromatin immunoprecipitation
    • Orlando V: Mapping chromosomal proteins in vivo by for-maldehyde-crosslinked-chromatin immunoprecipitation. Trends Biochem Sci 2000, 25:99-104.
    • (2000) Trends Biochem Sci , vol.25 , pp. 99-104
    • Orlando, V.1
  • 19
    • 0029757618 scopus 로고    scopus 로고
    • Myc-Max heterodimers activate a DEAD box gene and interact with multiple E box-related sites in vivo
    • Grandori C, Mac J, Siebelt F, Ayer DE, Eisenman RN: Myc-Max heterodimers activate a DEAD box gene and interact with multiple E box-related sites in vivo. EMBO J 1996, 15:4344- 4357.
    • (1996) EMBO J , vol.15
    • Grandori, C.1    Mac, J.2    Siebelt, F.3    Ayer, D.E.4    Eisenman, R.N.5
  • 20
    • 0031080378 scopus 로고    scopus 로고
    • Analysis of chromatin structure by in vivo formaldehyde cross-linking
    • Orlando V, Strutt H, Paro R: Analysis of chromatin structure by in vivo formaldehyde cross-linking. Methods 1997, 11: 205-214.
    • (1997) Methods , vol.11 , pp. 205-214
    • Orlando, V.1    Strutt, H.2    Paro, R.3
  • 23
    • 8644232564 scopus 로고    scopus 로고
    • Progress and challenges in profiling the dynamics of chromatin and transcription factor binding with DNA microarrays
    • Hanlon SE, Lieb JD: Progress and challenges in profiling the dynamics of chromatin and transcription factor binding with DNA microarrays. Curr Opin Genet Dev 2004, 14:697-705.
    • (2004) Curr Opin Genet Dev , vol.14 , pp. 697-705
    • Hanlon, S.E.1    Lieb, J.D.2
  • 29
    • 3543008920 scopus 로고    scopus 로고
    • High-resolution genome-wide mapping of histone modifications
    • Roh TY, Ngau WC, Cui K, Landsman D, Zhao K: High-resolution genome-wide mapping of histone modifications. Nat Biotechnol 2004, 22:1013-1016.
    • (2004) Nat Biotechnol , vol.22 , pp. 1013-1016
    • Roh, T.Y.1    Ngau, W.C.2    Cui, K.3    Landsman, D.4    Zhao, K.5
  • 37
    • 0032520953 scopus 로고    scopus 로고
    • Histone deacetylase activity of Rpd3 is important for transcriptional repression in vivo
    • Kadosh D, Struhl K: Histone deacetylase activity of Rpd3 is important for transcriptional repression in vivo. Genes Dev 1998, 12:797-805.
    • (1998) Genes Dev , vol.12 , pp. 797-805
    • Kadosh, D.1    Struhl, K.2
  • 39
    • 58149085861 scopus 로고    scopus 로고
    • Purification of proteins associated with specific genomic loci
    • Dejardin J, Kingston RE: Purification of proteins associated with specific genomic loci. Cell 2009, 136:175-186.
    • (2009) Cell , vol.136 , pp. 175-186
    • Dejardin, J.1    Kingston, R.E.2
  • 41
    • 67749132423 scopus 로고    scopus 로고
    • Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
    • Chi SW, Zang JB, Mele A, Darnell RB: Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. Nature 2009, 460: 479-486.
    • (2009) Nature , vol.460 , pp. 479-486
    • Chi, S.W.1    Zang, J.B.2    Mele, A.3    Darnell, R.B.4
  • 45
    • 0023683667 scopus 로고
    • How eukaryotic transcriptional activators work
    • Ptashne M: How eukaryotic transcriptional activators work. Nature 1988, 335:683-689.
    • (1988) Nature , vol.335 , pp. 683-689
    • Ptashne, M.1


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