-
1
-
-
58149457065
-
Argonaute-2 expression is regulated by epidermal growth factor receptor and mitogen-activated protein kinase signaling and correlates with a transformed phenotype in breast cancer cells
-
Adams B.D., Claffey K.P., and White B.A. Argonaute-2 expression is regulated by epidermal growth factor receptor and mitogen-activated protein kinase signaling and correlates with a transformed phenotype in breast cancer cells. Endocrinology 150 (2009) 14-23
-
(2009)
Endocrinology
, vol.150
, pp. 14-23
-
-
Adams, B.D.1
Claffey, K.P.2
White, B.A.3
-
2
-
-
74049088856
-
Lost in translation: an assessment and perspective for computational microRNA target identification
-
Alexiou P., Maragkakis M., Papadopoulos G.L., Reczko M., and Hatzigeorgiou A.G. Lost in translation: an assessment and perspective for computational microRNA target identification. Bioinformatics 25 (2009) 3049-3055
-
(2009)
Bioinformatics
, vol.25
, pp. 3049-3055
-
-
Alexiou, P.1
Maragkakis, M.2
Papadopoulos, G.L.3
Reczko, M.4
Hatzigeorgiou, A.G.5
-
3
-
-
74049088856
-
Lost in translation: an assessment and perspective for computational microRNA target identification
-
Alexiou P., Maragkakis M., Papadopoulos G.L., Reczko M., and Hatzigeorgiou A.G. Lost in translation: an assessment and perspective for computational microRNA target identification. Bioinformatics 25 (2009) 3049-3055
-
(2009)
Bioinformatics
, vol.25
, pp. 3049-3055
-
-
Alexiou, P.1
Maragkakis, M.2
Papadopoulos, G.L.3
Reczko, M.4
Hatzigeorgiou, A.G.5
-
4
-
-
4644309196
-
The functions of animal microRNAs
-
Ambros V. The functions of animal microRNAs. Nature 431 (2004) 350-355
-
(2004)
Nature
, vol.431
, pp. 350-355
-
-
Ambros, V.1
-
5
-
-
55549137419
-
A novel biochemical method to identify target genes of individual microRNAs: identification of a new Caenorhabditis elegans let-7 target
-
Andachi Y. A novel biochemical method to identify target genes of individual microRNAs: identification of a new Caenorhabditis elegans let-7 target. RNA 14 (2008) 2440-2451
-
(2008)
RNA
, vol.14
, pp. 2440-2451
-
-
Andachi, Y.1
-
6
-
-
33745402414
-
A novel class of small RNAs bind to MILI protein in mouse testes
-
Aravin A., Gaidatzis D., Pfeffer S., Lagos-Quintana M., Landgraf P., Iovino N., Morris P., Brownstein M.J., Kuramochi-Miyagawa S., Nakano T., Chien M., Russo J.J., Ju J., Sheridan R., Sander C., Zavolan M., and Tuschl T. A novel class of small RNAs bind to MILI protein in mouse testes. Nature 442 (2006) 203-207
-
(2006)
Nature
, vol.442
, pp. 203-207
-
-
Aravin, A.1
Gaidatzis, D.2
Pfeffer, S.3
Lagos-Quintana, M.4
Landgraf, P.5
Iovino, N.6
Morris, P.7
Brownstein, M.J.8
Kuramochi-Miyagawa, S.9
Nakano, T.10
Chien, M.11
Russo, J.J.12
Ju, J.13
Sheridan, R.14
Sander, C.15
Zavolan, M.16
Tuschl, T.17
-
7
-
-
0015976763
-
Propagation of human tumors in antithymocyte serum-treated mice
-
Arnstein P., Taylor D.O., Nelson-Rees W.A., Huebner R.J., and Lennette E.H. Propagation of human tumors in antithymocyte serum-treated mice. J. Natl. Cancer Inst. 52 (1974) 71-84
-
(1974)
J. Natl. Cancer Inst.
, vol.52
, pp. 71-84
-
-
Arnstein, P.1
Taylor, D.O.2
Nelson-Rees, W.A.3
Huebner, R.J.4
Lennette, E.H.5
-
8
-
-
49949116902
-
The impact of microRNAs on protein output
-
Baek D., Villen J., Shin C., Camargo F.D., Gygi S.P., and Bartel D.P. The impact of microRNAs on protein output. Nature 455 (2008) 64-71
-
(2008)
Nature
, vol.455
, pp. 64-71
-
-
Baek, D.1
Villen, J.2
Shin, C.3
Camargo, F.D.4
Gygi, S.P.5
Bartel, D.P.6
-
9
-
-
68149171901
-
Computational challenges in miRNA target predictions: to be or not to be a true target?
-
Barbato C., Arisi I., Frizzo M.E., Brandi R., Da Sacco L., and Masotti A. Computational challenges in miRNA target predictions: to be or not to be a true target?. J. Biomed. Biotechnol. 2009 (2009) 803069
-
(2009)
J. Biomed. Biotechnol.
, vol.2009
, pp. 803069
-
-
Barbato, C.1
Arisi, I.2
Frizzo, M.E.3
Brandi, R.4
Da Sacco, L.5
Masotti, A.6
-
10
-
-
58249088751
-
MicroRNAs: target recognition and regulatory functions
-
Bartel D.P. MicroRNAs: target recognition and regulatory functions. Cell 136 (2009) 215-233
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
11
-
-
37649021046
-
Identification of human microRNA targets from isolated argonaute protein complexes
-
Beitzinger M., Peters L., Zhu J.Y., Kremmer E., and Meister G. Identification of human microRNA targets from isolated argonaute protein complexes. RNA Biol. 4 (2007) 76-84
-
(2007)
RNA Biol.
, vol.4
, pp. 76-84
-
-
Beitzinger, M.1
Peters, L.2
Zhu, J.Y.3
Kremmer, E.4
Meister, G.5
-
12
-
-
11844262661
-
Phylogenetic shadowing and computational identification of human microRNA genes
-
Berezikov E., Guryev V., van de Belt J., Wienholds E., Plasterk R.H., and Cuppen E. Phylogenetic shadowing and computational identification of human microRNA genes. Cell 120 (2005) 21-24
-
(2005)
Cell
, vol.120
, pp. 21-24
-
-
Berezikov, E.1
Guryev, V.2
van de Belt, J.3
Wienholds, E.4
Plasterk, R.H.5
Cuppen, E.6
-
13
-
-
33751548288
-
Diversity of microRNAs in human and chimpanzee brain
-
Berezikov E., Thuemmler F., van Laake L.W., Kondova I., Bontrop R., Cuppen E., and Plasterk R.H. Diversity of microRNAs in human and chimpanzee brain. Nat. Genet. 38 (2006) 1375-1377
-
(2006)
Nat. Genet.
, vol.38
, pp. 1375-1377
-
-
Berezikov, E.1
Thuemmler, F.2
van Laake, L.W.3
Kondova, I.4
Bontrop, R.5
Cuppen, E.6
Plasterk, R.H.7
-
14
-
-
17444365091
-
A computational view of microRNAs and their targets
-
Brown J.R., and Sanseau P. A computational view of microRNAs and their targets. Drug Discov. Today 10 (2005) 595-601
-
(2005)
Drug Discov. Today
, vol.10
, pp. 595-601
-
-
Brown, J.R.1
Sanseau, P.2
-
15
-
-
0036828639
-
The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis
-
Carmell M.A., Xuan Z., Zhang M.Q., and Hannon G.J. The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis. Genes Dev. 16 (2002) 2733-2742
-
(2002)
Genes Dev.
, vol.16
, pp. 2733-2742
-
-
Carmell, M.A.1
Xuan, Z.2
Zhang, M.Q.3
Hannon, G.J.4
-
16
-
-
14844364472
-
Antisense inhibition of human miRNAs and indications for an involvement of miRNA in cell growth and apoptosis
-
Cheng A.M., Byrom M.W., Shelton J., and Ford L.P. Antisense inhibition of human miRNAs and indications for an involvement of miRNA in cell growth and apoptosis. Nucleic Acids Res. 33 (2005) 1290-1297
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 1290-1297
-
-
Cheng, A.M.1
Byrom, M.W.2
Shelton, J.3
Ford, L.P.4
-
17
-
-
67749132423
-
Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
-
Chi S.W., Zang J.B., Mele A., and Darnell R.B. Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. Nature 460 (2009) 479-486
-
(2009)
Nature
, vol.460
, pp. 479-486
-
-
Chi, S.W.1
Zang, J.B.2
Mele, A.3
Darnell, R.B.4
-
18
-
-
60549101101
-
Dysregulated microRNAs and their predicted targets associated with endometrioid endometrial adenocarcinoma in Hong Kong women
-
Chung T.K., Cheung T.H., Huen N.Y., Wong K.W., Lo K.W., Yim S.F., Siu N.S., Wong Y.M., Tsang P.T., Pang M.W., Yu M.Y., To K.F., Mok S.C., Wang V.W., Li C., Cheung A.Y., Doran G., Birrer M.J., Smith D.I., and Wong Y.F. Dysregulated microRNAs and their predicted targets associated with endometrioid endometrial adenocarcinoma in Hong Kong women. Int. J. Cancer 124 (2009) 1358-1365
-
(2009)
Int. J. Cancer
, vol.124
, pp. 1358-1365
-
-
Chung, T.K.1
Cheung, T.H.2
Huen, N.Y.3
Wong, K.W.4
Lo, K.W.5
Yim, S.F.6
Siu, N.S.7
Wong, Y.M.8
Tsang, P.T.9
Pang, M.W.10
Yu, M.Y.11
To, K.F.12
Mok, S.C.13
Wang, V.W.14
Li, C.15
Cheung, A.Y.16
Doran, G.17
Birrer, M.J.18
Smith, D.I.19
Wong, Y.F.20
more..
-
19
-
-
23044464236
-
Extensive modulation of a set of microRNAs in primary glioblastoma
-
Ciafre S.A., Galardi S., Mangiola A., Ferracin M., Liu C.G., Sabatino G., Negrini M., Maira G., Croce C.M., and Farace M.G. Extensive modulation of a set of microRNAs in primary glioblastoma. Biochem. Biophys. Res. Commun. 334 (2005) 1351-1358
-
(2005)
Biochem. Biophys. Res. Commun.
, vol.334
, pp. 1351-1358
-
-
Ciafre, S.A.1
Galardi, S.2
Mangiola, A.3
Ferracin, M.4
Liu, C.G.5
Sabatino, G.6
Negrini, M.7
Maira, G.8
Croce, C.M.9
Farace, M.G.10
-
20
-
-
73949158230
-
n-3 Polyunsaturated fatty acids modulate carcinogen-directed non-coding microRNA signatures in rat colon
-
Davidson L.A., Wang N., Shah M.S., Lupton J.R., Ivanov I., and Chapkin R.S. n-3 Polyunsaturated fatty acids modulate carcinogen-directed non-coding microRNA signatures in rat colon. Carcinogenesis 30 (2009) 2077-2084
-
(2009)
Carcinogenesis
, vol.30
, pp. 2077-2084
-
-
Davidson, L.A.1
Wang, N.2
Shah, M.S.3
Lupton, J.R.4
Ivanov, I.5
Chapkin, R.S.6
-
21
-
-
33748346026
-
Perfect seed pairing is not a generally reliable predictor for miRNA-target interactions
-
Didiano D., and Hobert O. Perfect seed pairing is not a generally reliable predictor for miRNA-target interactions. Nat. Struct. Mol. Biol. 13 (2006) 849-851
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 849-851
-
-
Didiano, D.1
Hobert, O.2
-
22
-
-
77649175470
-
-
Dugas, J.C., Cuellar, T.L., Scholze, A., Ason, B., Ibrahim, A., Emery, B., Zamanian, J.L., Foo, L.C., McManus, M.T., Barres, B.A., 2010. Dicer1 and miR-219 Are Required for Normal Oligodendrocyte Differentiation and Myelination. Neuron. 65, 597-611.
-
Dugas, J.C., Cuellar, T.L., Scholze, A., Ason, B., Ibrahim, A., Emery, B., Zamanian, J.L., Foo, L.C., McManus, M.T., Barres, B.A., 2010. Dicer1 and miR-219 Are Required for Normal Oligodendrocyte Differentiation and Myelination. Neuron. 65, 597-611.
-
-
-
-
23
-
-
34447521718
-
Isolation of microRNA targets by miRNP immunopurification
-
Easow G., Teleman A.A., and Cohen S.M. Isolation of microRNA targets by miRNP immunopurification. RNA 13 (2007) 1198-1204
-
(2007)
RNA
, vol.13
, pp. 1198-1204
-
-
Easow, G.1
Teleman, A.A.2
Cohen, S.M.3
-
24
-
-
75949101467
-
-
Edbauer, D., Neilson, J.R., Foster, K.A., Wang, C.F., Seeburg, D.P., Batterton, M.N., Tada, T., Dolan, B.M., Sharp, P.A., Sheng, M., 2010. Regulation of synaptic structure and function by FMRP-associated microRNAs miR-125b and miR-132. Neuron. 65, 373-84.
-
Edbauer, D., Neilson, J.R., Foster, K.A., Wang, C.F., Seeburg, D.P., Batterton, M.N., Tada, T., Dolan, B.M., Sharp, P.A., Sheng, M., 2010. Regulation of synaptic structure and function by FMRP-associated microRNAs miR-125b and miR-132. Neuron. 65, 373-84.
-
-
-
-
25
-
-
70350772348
-
MicroRNAs potentiate neural development
-
Fineberg S.K., Kosik K.S., and Davidson B.L. MicroRNAs potentiate neural development. Neuron 64 (2009) 303-309
-
(2009)
Neuron
, vol.64
, pp. 303-309
-
-
Fineberg, S.K.1
Kosik, K.S.2
Davidson, B.L.3
-
26
-
-
70349690162
-
Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors
-
Goff L.A., Davila J., Swerdel M.R., Moore J.C., Cohen R.I., Wu H., Sun Y.E., and Hart R.P. Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors. PLoS ONE 4 (2009) e7192
-
(2009)
PLoS ONE
, vol.4
-
-
Goff, L.A.1
Davila, J.2
Swerdel, M.R.3
Moore, J.C.4
Cohen, R.I.5
Wu, H.6
Sun, Y.E.7
Hart, R.P.8
-
27
-
-
48249091655
-
An Argonaute transports siRNAs from the cytoplasm to the nucleus
-
Guang S., Bochner A.F., Pavelec D.M., Burkhart K.B., Harding S., Lachowiec J., and Kennedy S. An Argonaute transports siRNAs from the cytoplasm to the nucleus. Science 321 (2008) 537-541
-
(2008)
Science
, vol.321
, pp. 537-541
-
-
Guang, S.1
Bochner, A.F.2
Pavelec, D.M.3
Burkhart, K.B.4
Harding, S.5
Lachowiec, J.6
Kennedy, S.7
-
28
-
-
63849206509
-
Differential expression of microRNA species in human gastric cancer versus non-tumorous tissues
-
Guo J., Miao Y., Xiao B., Huan R., Jiang Z., Meng D., and Wang Y. Differential expression of microRNA species in human gastric cancer versus non-tumorous tissues. J. Gastroenterol. Hepatol. 24 (2009) 652-657
-
(2009)
J. Gastroenterol. Hepatol.
, vol.24
, pp. 652-657
-
-
Guo, J.1
Miao, Y.2
Xiao, B.3
Huan, R.4
Jiang, Z.5
Meng, D.6
Wang, Y.7
-
29
-
-
50849141708
-
mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts
-
Hammell M., Long D., Zhang L., Lee A., Carmack C.S., Han M., Ding Y., and Ambros V. mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts. Nat. Methods 5 (2008) 813-819
-
(2008)
Nat. Methods
, vol.5
, pp. 813-819
-
-
Hammell, M.1
Long, D.2
Zhang, L.3
Lee, A.4
Carmack, C.S.5
Han, M.6
Ding, Y.7
Ambros, V.8
-
30
-
-
26944441255
-
Dicing and slicing: the core machinery of the RNA interference pathway
-
Hammond S.M. Dicing and slicing: the core machinery of the RNA interference pathway. FEBS Lett. 579 (2005) 5822-5829
-
(2005)
FEBS Lett.
, vol.579
, pp. 5822-5829
-
-
Hammond, S.M.1
-
31
-
-
70350707749
-
Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2C-miRNA complexes and the degradation of miRNA targets
-
Hausser J., Landthaler M., Jaskiewicz L., Gaidatzis D., and Zavolan M. Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2C-miRNA complexes and the degradation of miRNA targets. Genome Res. 19 (2009) 2009-2020
-
(2009)
Genome Res.
, vol.19
, pp. 2009-2020
-
-
Hausser, J.1
Landthaler, M.2
Jaskiewicz, L.3
Gaidatzis, D.4
Zavolan, M.5
-
33
-
-
42949146575
-
MicroRNAs and the advent of vertebrate morphological complexity
-
Heimberg A.M., Sempere L.F., Moy V.N., Donoghue P.C., and Peterson K.J. MicroRNAs and the advent of vertebrate morphological complexity. Proc. Natl. Acad. Sci. U. S. A. 105 (2008) 2946-2950
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 2946-2950
-
-
Heimberg, A.M.1
Sempere, L.F.2
Moy, V.N.3
Donoghue, P.C.4
Peterson, K.J.5
-
34
-
-
47749154078
-
Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance
-
Hendrickson D.G., Hogan D.J., Herschlag D., Ferrell J.E., and Brown P.O. Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance. PLoS ONE 3 (2008) e2126
-
(2008)
PLoS ONE
, vol.3
-
-
Hendrickson, D.G.1
Hogan, D.J.2
Herschlag, D.3
Ferrell, J.E.4
Brown, P.O.5
-
35
-
-
72949115517
-
Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA
-
Hendrickson D.G., Hogan D.J., McCullough H.L., Myers J.W., Herschlag D., Ferrell J.E., and Brown P.O. Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA. PLoS Biol. 7 (2009) e1000238
-
(2009)
PLoS Biol.
, vol.7
-
-
Hendrickson, D.G.1
Hogan, D.J.2
McCullough, H.L.3
Myers, J.W.4
Herschlag, D.5
Ferrell, J.E.6
Brown, P.O.7
-
36
-
-
37349050790
-
The roles of binding site arrangement and combinatorial targeting in microRNA repression of gene expression
-
Hon L.S., and Zhang Z. The roles of binding site arrangement and combinatorial targeting in microRNA repression of gene expression. Genome Biol. 8 (2007) R166
-
(2007)
Genome Biol.
, vol.8
-
-
Hon, L.S.1
Zhang, Z.2
-
37
-
-
70349293700
-
Immunopurification of Ago1 miRNPs selects for a distinct class of microRNA targets
-
Hong X., Hammell M., Ambros V., and Cohen S.M. Immunopurification of Ago1 miRNPs selects for a distinct class of microRNA targets. Proc. Natl. Acad. Sci. U. S. A. 106 (2009) 15085-15090
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 15085-15090
-
-
Hong, X.1
Hammell, M.2
Ambros, V.3
Cohen, S.M.4
-
38
-
-
52749083438
-
Design and delivery of antisense oligonucleotides to block microRNA function in cultured Drosophila and human cells
-
Horwich M.D., and Zamore P.D. Design and delivery of antisense oligonucleotides to block microRNA function in cultured Drosophila and human cells. Nat. Protoc. 3 (2008) 1537-1549
-
(2008)
Nat. Protoc.
, vol.3
, pp. 1537-1549
-
-
Horwich, M.D.1
Zamore, P.D.2
-
39
-
-
33644873722
-
miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes
-
Hsu P.W., Huang H.D., Hsu S.D., Lin L.Z., Tsou A.P., Tseng C.P., Stadler P.F., Washietl S., and Hofacker I.L. miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes. Nucleic Acids Res. 34 (2006) D135-D139
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Hsu, P.W.1
Huang, H.D.2
Hsu, S.D.3
Lin, L.Z.4
Tsou, A.P.5
Tseng, C.P.6
Stadler, P.F.7
Washietl, S.8
Hofacker, I.L.9
-
40
-
-
67249160019
-
Labeled microRNA pull-down assay system: an experimental approach for high-throughput identification of microRNA-target mRNAs
-
Hsu R.J., Yang H.J., and Tsai H.J. Labeled microRNA pull-down assay system: an experimental approach for high-throughput identification of microRNA-target mRNAs. Nucleic Acids Res. 37 (2009) e77
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Hsu, R.J.1
Yang, H.J.2
Tsai, H.J.3
-
41
-
-
69249168252
-
Argonaute-mediated translational repression (and activation)
-
Iwasaki S., and Tomari Y. Argonaute-mediated translational repression (and activation). Fly (Austin) 3 (2009) 204-206
-
(2009)
Fly (Austin)
, vol.3
, pp. 204-206
-
-
Iwasaki, S.1
Tomari, Y.2
-
42
-
-
37648999735
-
A biochemical approach to identifying microRNA targets
-
Karginov F.V., Conaco C., Xuan Z., Schmidt B.H., Parker J.S., Mandel G., and Hannon G.J. A biochemical approach to identifying microRNA targets. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 19291-19296
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 19291-19296
-
-
Karginov, F.V.1
Conaco, C.2
Xuan, Z.3
Schmidt, B.H.4
Parker, J.S.5
Mandel, G.6
Hannon, G.J.7
-
43
-
-
33845275018
-
RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts
-
Keene J.D., Komisarow J.M., and Friedersdorf M.B. RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts. Nat. Protoc. 1 (2006) 302-307
-
(2006)
Nat. Protoc.
, vol.1
, pp. 302-307
-
-
Keene, J.D.1
Komisarow, J.M.2
Friedersdorf, M.B.3
-
44
-
-
67149115119
-
Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs
-
Khan A.A., Betel D., Miller M.L., Sander C., Leslie C.S., and Marks D.S. Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs. Nat. Biotechnol. 27 6 (2009) 549-555
-
(2009)
Nat. Biotechnol.
, vol.27
, Issue.6
, pp. 549-555
-
-
Khan, A.A.1
Betel, D.2
Miller, M.L.3
Sander, C.4
Leslie, C.S.5
Marks, D.S.6
-
45
-
-
70349309765
-
Transcriptional gene silencing using small RNAs
-
Kim D.H., and Rossi J.J. Transcriptional gene silencing using small RNAs. Methods Mol. Biol. 555 (2009) 119-125
-
(2009)
Methods Mol. Biol.
, vol.555
, pp. 119-125
-
-
Kim, D.H.1
Rossi, J.J.2
-
46
-
-
2442672918
-
A combined computational-experimental approach predicts human microRNA targets
-
Kiriakidou M., Nelson P.T., Kouranov A., Fitziev P., Bouyioukos C., Mourelatos Z., and Hatzigeorgiou A. A combined computational-experimental approach predicts human microRNA targets. Genes Dev. 18 (2004) 1165-1178
-
(2004)
Genes Dev.
, vol.18
, pp. 1165-1178
-
-
Kiriakidou, M.1
Nelson, P.T.2
Kouranov, A.3
Fitziev, P.4
Bouyioukos, C.5
Mourelatos, Z.6
Hatzigeorgiou, A.7
-
47
-
-
34250017082
-
An mRNA m7G cap binding-like motif within human Ago2 represses translation
-
Kiriakidou M., Tan G.S., Lamprinaki S., De Planell-Saguer M., Nelson P.T., and Mourelatos Z. An mRNA m7G cap binding-like motif within human Ago2 represses translation. Cell 129 (2007) 1141-1151
-
(2007)
Cell
, vol.129
, pp. 1141-1151
-
-
Kiriakidou, M.1
Tan, G.S.2
Lamprinaki, S.3
De Planell-Saguer, M.4
Nelson, P.T.5
Mourelatos, Z.6
-
48
-
-
33751254116
-
The neuronal microRNA system
-
Kosik K.S. The neuronal microRNA system. Nat. Rev. Neurosci. 7 (2006) 911-920
-
(2006)
Nat. Rev. Neurosci.
, vol.7
, pp. 911-920
-
-
Kosik, K.S.1
-
49
-
-
24644437266
-
The elegance of the MicroRNAs: a neuronal perspective
-
Kosik K.S., and Krichevsky A.M. The elegance of the MicroRNAs: a neuronal perspective. Neuron 47 (2005) 779-782
-
(2005)
Neuron
, vol.47
, pp. 779-782
-
-
Kosik, K.S.1
Krichevsky, A.M.2
-
50
-
-
33745480963
-
Specific microRNAs modulate embryonic stem cell-derived neurogenesis
-
Krichevsky A.M., Sonntag K.C., Isacson O., and Kosik K.S. Specific microRNAs modulate embryonic stem cell-derived neurogenesis. Stem Cells 24 (2006) 857-864
-
(2006)
Stem Cells
, vol.24
, pp. 857-864
-
-
Krichevsky, A.M.1
Sonntag, K.C.2
Isacson, O.3
Kosik, K.S.4
-
51
-
-
28444469246
-
Silencing of microRNAs in vivo with 'antagomirs'
-
Krutzfeldt J., Rajewsky N., Braich R., Rajeev K.G., Tuschl T., Manoharan M., and Stoffel M. Silencing of microRNAs in vivo with 'antagomirs'. Nature 438 (2005) 685-689
-
(2005)
Nature
, vol.438
, pp. 685-689
-
-
Krutzfeldt, J.1
Rajewsky, N.2
Braich, R.3
Rajeev, K.G.4
Tuschl, T.5
Manoharan, M.6
Stoffel, M.7
-
52
-
-
34447509510
-
Somatodendritic microRNAs identified by laser capture and multiplex RT-PCR
-
Kye M.J., Liu T., Levy S.F., Xu N.L., Groves B.B., Bonneau R., Lao K., and Kosik K.S. Somatodendritic microRNAs identified by laser capture and multiplex RT-PCR. RNA 13 (2007) 1224-1234
-
(2007)
RNA
, vol.13
, pp. 1224-1234
-
-
Kye, M.J.1
Liu, T.2
Levy, S.F.3
Xu, N.L.4
Groves, B.B.5
Bonneau, R.6
Lao, K.7
Kosik, K.S.8
-
53
-
-
33644756532
-
A genome-wide map of conserved microRNA targets in C. elegans
-
Lall S., Grun D., Krek A., Chen K., Wang Y.L., Dewey C.N., Sood P., Colombo T., Bray N., Macmenamin P., Kao H.L., Gunsalus K.C., Pachter L., Piano F., and Rajewsky N. A genome-wide map of conserved microRNA targets in C. elegans. Curr. Biol. 16 (2006) 460-471
-
(2006)
Curr. Biol.
, vol.16
, pp. 460-471
-
-
Lall, S.1
Grun, D.2
Krek, A.3
Chen, K.4
Wang, Y.L.5
Dewey, C.N.6
Sood, P.7
Colombo, T.8
Bray, N.9
Macmenamin, P.10
Kao, H.L.11
Gunsalus, K.C.12
Pachter, L.13
Piano, F.14
Rajewsky, N.15
-
54
-
-
57049148002
-
Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs
-
Landthaler M., Gaidatzis D., Rothballer A., Chen P.Y., Soll S.J., Dinic L., Ojo T., Hafner M., Zavolan M., and Tuschl T. Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs. RNA 14 (2008) 2580-2596
-
(2008)
RNA
, vol.14
, pp. 2580-2596
-
-
Landthaler, M.1
Gaidatzis, D.2
Rothballer, A.3
Chen, P.Y.4
Soll, S.J.5
Dinic, L.6
Ojo, T.7
Hafner, M.8
Zavolan, M.9
Tuschl, T.10
-
55
-
-
70349312583
-
MicroRNA-125b promotes neuronal differentiation in human cells by repressing multiple targets
-
Le M.T., Xie H., Zhou B., Chia P.H., Rizk P., Um M., Udolph G., Yang H., Lim B., and Lodish H.F. MicroRNA-125b promotes neuronal differentiation in human cells by repressing multiple targets. Mol. Cell. Biol. 29 (2009) 5290-5305
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 5290-5305
-
-
Le, M.T.1
Xie, H.2
Zhou, B.3
Chia, P.H.4
Rizk, P.5
Um, M.6
Udolph, G.7
Yang, H.8
Lim, B.9
Lodish, H.F.10
-
56
-
-
56549105330
-
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
-
Licatalosi D.D., Mele A., Fak J.J., Ule J., Kayikci M., Chi S.W., Clark T.A., Schweitzer A.C., Blume J.E., Wang X., Darnell J.C., and Darnell R.B. HITS-CLIP yields genome-wide insights into brain alternative RNA processing. Nature 456 (2008) 464-469
-
(2008)
Nature
, vol.456
, pp. 464-469
-
-
Licatalosi, D.D.1
Mele, A.2
Fak, J.J.3
Ule, J.4
Kayikci, M.5
Chi, S.W.6
Clark, T.A.7
Schweitzer, A.C.8
Blume, J.E.9
Wang, X.10
Darnell, J.C.11
Darnell, R.B.12
-
57
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
Lim L.P., Lau N.C., Garrett-Engele P., Grimson A., Schelter J.M., Castle J., Bartel D.P., Linsley P.S., and Johnson J.M. Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433 (2005) 769-773
-
(2005)
Nature
, vol.433
, pp. 769-773
-
-
Lim, L.P.1
Lau, N.C.2
Garrett-Engele, P.3
Grimson, A.4
Schelter, J.M.5
Castle, J.6
Bartel, D.P.7
Linsley, P.S.8
Johnson, J.M.9
-
58
-
-
38349131954
-
MicroRNAs: biogenesis and molecular functions
-
Liu X., Fortin K., and Mourelatos Z. MicroRNAs: biogenesis and molecular functions. Brain Pathol. 18 (2008) 113-121
-
(2008)
Brain Pathol.
, vol.18
, pp. 113-121
-
-
Liu, X.1
Fortin, K.2
Mourelatos, Z.3
-
59
-
-
34547212309
-
The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing
-
Makeyev E.V., Zhang J., Carrasco M.A., and Maniatis T. The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing. Mol. Cell 27 (2007) 435-448
-
(2007)
Mol. Cell
, vol.27
, pp. 435-448
-
-
Makeyev, E.V.1
Zhang, J.2
Carrasco, M.A.3
Maniatis, T.4
-
60
-
-
21844449964
-
Human mitochondrial tRNAMet is exported to the cytoplasm and associates with the Argonaute 2 protein
-
Maniataki E., and Mourelatos Z. Human mitochondrial tRNAMet is exported to the cytoplasm and associates with the Argonaute 2 protein. RNA 11 (2005) 849-852
-
(2005)
RNA
, vol.11
, pp. 849-852
-
-
Maniataki, E.1
Mourelatos, Z.2
-
62
-
-
34249724360
-
Noncoding RNAs and RNA editing in brain development, functional diversification, and neurological disease
-
Mehler M.F., and Mattick J.S. Noncoding RNAs and RNA editing in brain development, functional diversification, and neurological disease. Physiol. Rev. 87 (2007) 799-823
-
(2007)
Physiol. Rev.
, vol.87
, pp. 799-823
-
-
Mehler, M.F.1
Mattick, J.S.2
-
63
-
-
33748587841
-
A pattern-based method for the identification of microRNA binding sites and their corresponding heteroduplexes
-
Miranda K.C., Huynh T., Tay Y., Ang Y.S., Tam W.L., Thomson A.M., Lim B., and Rigoutsos I. A pattern-based method for the identification of microRNA binding sites and their corresponding heteroduplexes. Cell 126 (2006) 1203-1217
-
(2006)
Cell
, vol.126
, pp. 1203-1217
-
-
Miranda, K.C.1
Huynh, T.2
Tay, Y.3
Ang, Y.S.4
Tam, W.L.5
Thomson, A.M.6
Lim, B.7
Rigoutsos, I.8
-
64
-
-
40649125588
-
RNA-mediated transcriptional gene silencing in human cells
-
Morris K.V. RNA-mediated transcriptional gene silencing in human cells. Curr. Top. Microbiol. Immunol. 320 (2008) 211-224
-
(2008)
Curr. Top. Microbiol. Immunol.
, vol.320
, pp. 211-224
-
-
Morris, K.V.1
-
65
-
-
0037087780
-
miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs
-
Mourelatos Z., Dostie J., Paushkin S., Sharma A., Charroux B., Abel L., Rappsilber J., Mann M., and Dreyfuss G. miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs. Genes Dev. 16 (2002) 720-728
-
(2002)
Genes Dev.
, vol.16
, pp. 720-728
-
-
Mourelatos, Z.1
Dostie, J.2
Paushkin, S.3
Sharma, A.4
Charroux, B.5
Abel, L.6
Rappsilber, J.7
Mann, M.8
Dreyfuss, G.9
-
66
-
-
34249874344
-
RNA in brain disease: no longer just "the messenger in the middle"
-
Nelson P.T., and Keller J.N. RNA in brain disease: no longer just "the messenger in the middle". J. Neuropathol. Exp. Neurol. 66 (2007) 461-468
-
(2007)
J. Neuropathol. Exp. Neurol.
, vol.66
, pp. 461-468
-
-
Nelson, P.T.1
Keller, J.N.2
-
67
-
-
38349186896
-
MicroRNAs (miRNAs) in neurodegenerative diseases
-
Nelson P.T., Wang W.X., and Rajeev B.W. MicroRNAs (miRNAs) in neurodegenerative diseases. Brain Pathol. 18 (2008) 130-138
-
(2008)
Brain Pathol.
, vol.18
, pp. 130-138
-
-
Nelson, P.T.1
Wang, W.X.2
Rajeev, B.W.3
-
68
-
-
77951193389
-
-
Nonne, N., Ameyar-Zazoua, M., Souidi, M., Harel-Bellan, A., 2010. Tandem affinity purification ofmiRNA target mRNAs (TAP-Tar). Nucleic Acids Res. 38 (4), e20 (Electronic publication ahead of print, 2009 Dec 2).
-
Nonne, N., Ameyar-Zazoua, M., Souidi, M., Harel-Bellan, A., 2010. Tandem affinity purification ofmiRNA target mRNAs (TAP-Tar). Nucleic Acids Res. 38 (4), e20 (Electronic publication ahead of print, 2009 Dec 2).
-
-
-
-
69
-
-
73249140580
-
-
Orom, U.A., Lund, A.H., 2010. Experimental identification of microRNA targets. Gene 451 (1-2), 1-5 (Electronic publication ahead of print, 2009 Nov 24).
-
Orom, U.A., Lund, A.H., 2010. Experimental identification of microRNA targets. Gene 451 (1-2), 1-5 (Electronic publication ahead of print, 2009 Nov 24).
-
-
-
-
70
-
-
33646027887
-
LNA-modified oligonucleotides mediate specific inhibition of microRNA function
-
Orom U.A., Kauppinen S., and Lund A.H. LNA-modified oligonucleotides mediate specific inhibition of microRNA function. Gene 372 (2006) 137-141
-
(2006)
Gene
, vol.372
, pp. 137-141
-
-
Orom, U.A.1
Kauppinen, S.2
Lund, A.H.3
-
71
-
-
34250646697
-
Molecular mechanism of target RNA transcript recognition by Argonaute-guide complexes
-
Parker J.S., Roe S.M., and Barford D. Molecular mechanism of target RNA transcript recognition by Argonaute-guide complexes. Cold Spring Harb. Symp. Quant. Biol. 71 (2006) 45-50
-
(2006)
Cold Spring Harb. Symp. Quant. Biol.
, vol.71
, pp. 45-50
-
-
Parker, J.S.1
Roe, S.M.2
Barford, D.3
-
72
-
-
33745248430
-
microRNA target predictions in animals
-
Rajewsky N. microRNA target predictions in animals. Nat. Genet. 38 Suppl (2006) S8-S13
-
(2006)
Nat. Genet.
, vol.38 SUPPL
-
-
Rajewsky, N.1
-
73
-
-
65949121645
-
New tricks for animal microRNAS: targeting of amino acid coding regions at conserved and nonconserved sites
-
Rigoutsos I. New tricks for animal microRNAS: targeting of amino acid coding regions at conserved and nonconserved sites. Cancer Res. 69 (2009) 3245-3248
-
(2009)
Cancer Res.
, vol.69
, pp. 3245-3248
-
-
Rigoutsos, I.1
-
76
-
-
0042124978
-
Identification of eight members of the Argonaute family in the human genome small star, filled
-
Sasaki T., Shiohama A., Minoshima S., and Shimizu N. Identification of eight members of the Argonaute family in the human genome small star, filled. Genomics 82 (2003) 323-330
-
(2003)
Genomics
, vol.82
, pp. 323-330
-
-
Sasaki, T.1
Shiohama, A.2
Minoshima, S.3
Shimizu, N.4
-
77
-
-
49949117302
-
Widespread changes in protein synthesis induced by microRNAs
-
Selbach M., Schwanhausser B., Thierfelder N., Fang Z., Khanin R., and Rajewsky N. Widespread changes in protein synthesis induced by microRNAs. Nature 455 (2008) 58-63
-
(2008)
Nature
, vol.455
, pp. 58-63
-
-
Selbach, M.1
Schwanhausser, B.2
Thierfelder, N.3
Fang, Z.4
Khanin, R.5
Rajewsky, N.6
-
78
-
-
31044444975
-
TarBase: a comprehensive database of experimentally supported animal microRNA targets
-
Sethupathy P., Corda B., and Hatzigeorgiou A.G. TarBase: a comprehensive database of experimentally supported animal microRNA targets. RNA 12 (2006) 192-197
-
(2006)
RNA
, vol.12
, pp. 192-197
-
-
Sethupathy, P.1
Corda, B.2
Hatzigeorgiou, A.G.3
-
79
-
-
55049132350
-
Regulation of mammalian microRNA processing and function by cellular signaling and subcellular localization
-
Smalheiser N.R. Regulation of mammalian microRNA processing and function by cellular signaling and subcellular localization. Biochim. Biophys. Acta 1779 (2008) 678-681
-
(2008)
Biochim. Biophys. Acta
, vol.1779
, pp. 678-681
-
-
Smalheiser, N.R.1
-
80
-
-
57149143196
-
Synaptic enrichment of microRNAs in adult mouse forebrain is related to structural features of their precursors
-
Smalheiser N.R. Synaptic enrichment of microRNAs in adult mouse forebrain is related to structural features of their precursors. Biol. Direct 3 (2008) 44
-
(2008)
Biol. Direct
, vol.3
, pp. 44
-
-
Smalheiser, N.R.1
-
81
-
-
76749108945
-
-
Smalheiser, N.R., Lugli, G., 2009. microRNA regulation of synaptic plasticity. Neuromol. Med. 11 (3), 133-140 (Electronic publication ahead of print, 2009 May 21).
-
Smalheiser, N.R., Lugli, G., 2009. microRNA regulation of synaptic plasticity. Neuromol. Med. 11 (3), 133-140 (Electronic publication ahead of print, 2009 May 21).
-
-
-
-
82
-
-
59949096548
-
Essential and overlapping functions for mammalian Argonautes in microRNA silencing
-
Su H., Trombly M.I., Chen J., and Wang X. Essential and overlapping functions for mammalian Argonautes in microRNA silencing. Genes Dev. 23 (2009) 304-317
-
(2009)
Genes Dev.
, vol.23
, pp. 304-317
-
-
Su, H.1
Trombly, M.I.2
Chen, J.3
Wang, X.4
-
83
-
-
75649133887
-
Expanded RNA-binding activities of mammalian Argonaute 2
-
Tan G.S., Garchow B.G., Liu X., Yeung J., Morris J.P.t., Cuellar T.L., McManus M.T., and Kiriakidou M. Expanded RNA-binding activities of mammalian Argonaute 2. Nucleic Acids Res. 37 22 (2009) 7533-7545
-
(2009)
Nucleic Acids Res.
, vol.37
, Issue.22
, pp. 7533-7545
-
-
Tan, G.S.1
Garchow, B.G.2
Liu, X.3
Yeung, J.4
Morris, J.P.t.5
Cuellar, T.L.6
McManus, M.T.7
Kiriakidou, M.8
-
84
-
-
76149141556
-
A high throughput experimental approach to identify miRNA targets in human cells
-
Tan L.P., Seinen E., Duns G., de Jong D., Sibon O.C., Poppema S., Kroesen B.J., Kok K., and van den Berg A. A high throughput experimental approach to identify miRNA targets in human cells. Nucleic Acids Res. 37 (2009) e137
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Tan, L.P.1
Seinen, E.2
Duns, G.3
de Jong, D.4
Sibon, O.C.5
Poppema, S.6
Kroesen, B.J.7
Kok, K.8
van den Berg, A.9
-
85
-
-
33646095253
-
A novel method to detect functional microRNA targets
-
Vatolin S., Navaratne K., and Weil R.J. A novel method to detect functional microRNA targets. J. Mol. Biol. 358 (2006) 983-996
-
(2006)
J. Mol. Biol.
, vol.358
, pp. 983-996
-
-
Vatolin, S.1
Navaratne, K.2
Weil, R.J.3
-
86
-
-
38749095507
-
The expression of microRNA miR-107 decreases early in Alzheimer's disease and may accelerate disease progression through regulation of beta-site amyloid precursor protein-cleaving enzyme 1
-
Wang W.X., Rajeev B.W., Stromberg A.J., Ren N., Tang G., Huang Q., Rigoutsos I., and Nelson P.T. The expression of microRNA miR-107 decreases early in Alzheimer's disease and may accelerate disease progression through regulation of beta-site amyloid precursor protein-cleaving enzyme 1. J. Neurosci. 28 (2008) 1213-1223
-
(2008)
J. Neurosci.
, vol.28
, pp. 1213-1223
-
-
Wang, W.X.1
Rajeev, B.W.2
Stromberg, A.J.3
Ren, N.4
Tang, G.5
Huang, Q.6
Rigoutsos, I.7
Nelson, P.T.8
-
87
-
-
75149163985
-
Anti-Argonaute RIP-Chip shows that miRNA transfections alter global patterns of mRNA recruitment to microribonucleoprotein complexes
-
Wang W.X., Wilfred B.R., Hu Y., Stromberg A.J., and Nelson P.T. Anti-Argonaute RIP-Chip shows that miRNA transfections alter global patterns of mRNA recruitment to microribonucleoprotein complexes. RNA 16 (2010) 394-404
-
(2010)
RNA
, vol.16
, pp. 394-404
-
-
Wang, W.X.1
Wilfred, B.R.2
Hu, Y.3
Stromberg, A.J.4
Nelson, P.T.5
-
88
-
-
42949131237
-
Computational methods for microRNA target prediction
-
Watanabe Y., Tomita M., and Kanai A. Computational methods for microRNA target prediction. Methods Enzymol. 427 (2007) 65-86
-
(2007)
Methods Enzymol.
, vol.427
, pp. 65-86
-
-
Watanabe, Y.1
Tomita, M.2
Kanai, A.3
-
90
-
-
25144437022
-
MicroRNA: fine-tunes the function of genes in zebrafish
-
Ying S.Y., and Lin S.L. MicroRNA: fine-tunes the function of genes in zebrafish. Biochem. Biophys. Res. Commun. 335 (2005) 1-4
-
(2005)
Biochem. Biophys. Res. Commun.
, vol.335
, pp. 1-4
-
-
Ying, S.Y.1
Lin, S.L.2
-
91
-
-
36249012075
-
Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2
-
Zhang L., Ding L., Cheung T.H., Dong M.Q., Chen J., Sewell A.K., Liu X., Yates III J.R., and Han M. Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2. Mol. Cell 28 (2007) 598-613
-
(2007)
Mol. Cell
, vol.28
, pp. 598-613
-
-
Zhang, L.1
Ding, L.2
Cheung, T.H.3
Dong, M.Q.4
Chen, J.5
Sewell, A.K.6
Liu, X.7
Yates III, J.R.8
Han, M.9
-
92
-
-
45849126048
-
Molecular evolution of a primate-specific microRNA family
-
Zhang R., Wang Y.Q., and Su B. Molecular evolution of a primate-specific microRNA family. Mol. Biol. Evol. 25 (2008) 1493-1502
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1493-1502
-
-
Zhang, R.1
Wang, Y.Q.2
Su, B.3
-
93
-
-
77649166937
-
-
Zhao, X., He, X., Han, X., Yu, Y., Ye, F., Chen, Y., Hoang, T., Xu, X., Mi, Q.S., Xin, M., Wang, F., Appel, B., Lu, Q.R., 2010. MicroRNA-Mediated Control of Oligodendrocyte Differentiation. Neuron. 65, 612-626.
-
Zhao, X., He, X., Han, X., Yu, Y., Ye, F., Chen, Y., Hoang, T., Xu, X., Mi, Q.S., Xin, M., Wang, F., Appel, B., Lu, Q.R., 2010. MicroRNA-Mediated Control of Oligodendrocyte Differentiation. Neuron. 65, 612-626.
-
-
-
|