Infrared signature and folding dynamics of a helical β-peptide

Journal of the American Chemical Society

Volumn 132, Issue 16, 2010, Pages 5616-5618

  Montalvo, Geronda ^a   Waegele, Matthias M ^a   Shandler, Scott ^a   Gai, Feng ^a   DeGrado, William F ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMIDE I; ENERGY LANDSCAPE; FOLDAMERS; FOLDING DYNAMICS; HELICAL PEPTIDE; HELICAL STRUCTURES; INFRARED SIGNATURE; MODEL SYSTEM; RELAXATION KINETICS; RELAXATION RATES; SHARP FEATURES; TIME-SCALES; UNFOLDING KINETICS;

AMIDES; AMINO ACIDS; ORGANIC ACIDS; PROTEIN FOLDING;

PEPTIDES;

BETA AMINO ACID; PEPTIDE; WATER;

ALPHA HELIX; ARTICLE; INFRARED SPECTROSCOPY; KINETICS; MOLECULAR DYNAMICS; PROTEIN FOLDING; TEMPERATURE; AMINO ACID SEQUENCE; CHEMISTRY; INFRARED RADIATION; LASER; PROTEIN DENATURATION; PROTEIN SECONDARY STRUCTURE; QUALITY CONTROL;

AMINO ACID SEQUENCE; BENCHMARKING; INFRARED RAYS; KINETICS; LASERS; PEPTIDES; PROTEIN DENATURATION; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; TEMPERATURE; WATER;

EID: 77952571705     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja100459a     Document Type: Article

References (36)

1. Gellman, S. H. Acc. Chem. Res. 1998, 31, 173
2. Seebach, D., Beck, A. K., and Bierbaum, D. J. Chem. Biodiversity 2004, 1, 1111
3. Goodman, C. M., Choi, S., Shandler, S., and DeGrado, W. F. Nat. Chem. Biol. 2007, 3, 252
4. Bautista, A. D., Craig, C. J., Harker, E. A., and Schepartz, A. Curr. Opin. Chem. Biol. 2007, 11, 685
5. Daura, X., Jaun, B., Seebach, D., van Gunsteren, W. F., and Mark, A. E. J. Mol. Biol. 1998, 280, 925
6. Raguse, T. L., Lai, J. R., LePlae, P. R., and Gellman, S. H. Org. Lett. 2001, 3, 3963
7. Cheng, R. P. and DeGrado, W. F. J. Am. Chem. Soc. 2002, 124, 11564
8. Daniels, D. S., Petersson, E. J., Qui, J. X., and Schepartz, A. J. Am. Chem. Soc. 2007, 129, 1532
9. Cheng, R. P. and DeGrado, W. F. J. Am. Chem. Soc. 2001, 123, 5162
10. Huang, C. Y., Klemke, J. W., Getahun, Z., DeGrado, W. F., and Gai, F. J. Am. Chem. Soc. 2001, 123, 9235
11. Zhu, Y. J., Fu, X. R., Wang, T., Tamura, A., Takada, S., Saven, J. G., and Gai, F. Chem. Phys. 2004, 307, 99
12. Gilmanshin, R., Williams, S., Callender, R. H., Woodruff, W. H., and Dyer, R. B. Biochemistry 1997, 36, 15006
13. Mukherjee, S., Chowdhury, P., and Gai, F. J. Phys. Chem. B 2007, 111, 4596
14. Manas, E. S., Getahun, Z., Wright, W. W., DeGrado, W. F., and Vanderkooi, J. M. J. Am. Chem. Soc. 2000, 122, 9883
15. Krimm, S. and Bandekar, J. Adv. Protein Chem. 1986, 38, 181
16. Torii, H. and Tasumi, M. J. J. Chem. Phys. 1992, 96, 3379
17. Hamm, P., Lim, M., and Hochstrasser, R. M. J. Phys. Chem. B 1998, 102, 6123
18. Woutersen, S. and Hamm, P. J. Phys.: Condens. Matter 2002, 14, R1035
19. Chung, H. S. and Tokmakoff, A. J. Phys. Chem. B 2006, 110, 2888
20. Gnanakaran, S., Hochstrasser, R. M., and Garcia, A. E. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 9229
21. Scheurer, C., Piryatinski, A., and Mukamel, S. J. Am. Chem. Soc. 2001, 123, 3114
22. Hamm, P., Woutersen, S., and Rueping, M. Helv. Chim. Acta 2002, 85, 3883
23. Huang, C. Y., Getahun, Z., Zhu, Y. J., Klemke, J. W., DeGrado, W. F., and Gai, F. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 2788
24. Lednev, I. K., Karnoup, A. S., Sparrow, M. C., and Asher, S. A. J. Am. Chem. Soc. 1999, 121, 8074
25. Wang, T., Du, D., and Gai, F. Chem. Phys. Lett. 2003, 370, 842
26. Wang, T., Zhu, Y. J., Getahun, Z., Du, D. G., Huang, C. Y., DeGrado, W. F., and Gai, F. J. Phys. Chem. B 2004, 108, 15301
27. Yang, W. Y., Prince, R. B., Sabelko, J., Moore, J. S., and Gruebele, M. J. Am. Chem. Soc. 2000, 122, 3248
28. Mikhonin, A. V., Asher, S. A., Bykov, S. V., and Murza, A. J. Phys. Chem. B 2007, 111, 3280
29. Jas, G. S., William, E. A., and Hofrichter, J. J. Phys. Chem. B 2001, 105, 261
30. Daura, X., Gademann, K., Schafer, H., Jaun, B., Seebach, D., and van Gunsteren, W. F. J. Am. Chem. Soc. 2001, 123, 2393
31. Ogihara, N. L., Ghirlanda, G., Bryson, J. W., Gingery, M., DeGrado, W. F., and Eisenberg, D. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 1404
32. Ghirlanda, G., Lear, J. D., Ogihara, N. L., Eisenberg, D., and DeGrado, W. F. J. Mol. Biol. 2002, 319, 243
33. Seebach, D., Overhand, M., Kuhnle, F. N. M., and Martinoni, B. Helv. Chim. Acta 1996, 79, 913
34. Cheng, R. P., Gellman, S. H., and DeGrado, W. F. Chem. Rev. 2001, 101, 3219
35. Seebach, D., Hook, D. F., and Glattli, A. Biopolymers 2006, 84, 23
36. Keller, B., Gattin, Z., and van Gunsteren, W. F. Proteins: Struct., Funct., Bioinform. 2010, DOI 10.1002/prot.22685.