Infrared study of the effect of hydration on the amide i band and aggregation properties of helical peptides

Journal of Physical Chemistry B

Volumn 111, Issue 17, 2007, Pages 4596-4602

  Mukherjee, Smita ^a   Chowdhury, Pramit ^a   Gai, Feng ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMIDES; AMINO ACIDS; CONFORMATIONS; ENERGY BARRIERS; HYDRATION; MICELLES; SODIUM COMPOUNDS; WATER CONTENT;

HELICAL PEPTIDES; SECONDARY STRUCTURE; WAVENUMBERS;

PEPTIDES;

EID: 34249098940     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp0689060     Document Type: Article

References (63)

1. Mukherjee, S.; Chowdhury, P.; Gai, F. J. Phys. Chem. B 2006, 110, 11615.
2. Vila, J. A.; Ripoll, D. R.; Scheraga, H. A. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 13075.
3. Garcia, A. E.; Sanbonmatsu, K. Y. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 2782.
4. Abel, S.; Waks, M.; Urbach, W.; Marchi, M. J. Am. Chem. Soc. 2006, 128, 382.
5. Dobson, C. M. Trends Biochem. Sci. 1999, 24, 329.
6. Krimm, S.; Bandekar, J. Adv. Protein Chem. 1986, 38, 181.
7. Heimburg, T.; Schuenemann, J.; Weber, K.; Geisler, N. Biochemistry 1996, 35, 1375.
8. Gilmanshin, R.; Williams, S.; Callender, R. H.; Woodruff, W. H.; Dyer, R. B. Biochemistry 1997, 36, 15006.
9. Volk, M.; Kholodenko, Y.; Lu, H. S. M.; Gooding, E. A.; DeGrado, W. F.; Hochstrasser, R. M. J. Phys. Chem. B 1997, 101, 8607.
10. Yoder, G.; Pancoska, P.; Keiderling, T. A. Biochemistry 1997, 36, 15123.
11. Dyer, R. B.; Gai, F.; Woodruff, W. H.; Gilmanshin, R.; Callender, R. H. Acc. Chem. Res. 1998, 31, 709.
12. Decatur, S. M. Acc. Chem. Res. 2006, 39, 169.
13. Vu, D. M.; Myers, J. K.; Oas, T. G.; Dyer, R. B. Biochemistry 2004, 43, 3582.
14. Petty, S. A.; Volk, M. Phys. Chem. Chem. Phys. 2004, 6, 1022.
15. Du, D.; Gai, F. Biochemistry 2006, 45, 13131.
16. Zanni, M. T.; Gnanakaran, S.; Stenger, J.; Hochstrasser, R. M. J. Phys. Chem. B 2001, 105, 6520.
17. Zhuang, W.; Abramavicius, D.; Mukamel, S. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 18934.
18. Chung, H. S.; Khalil, M.; Smith, A. W.; Ganim, Z.; Tokmakoff, A. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 612.
19. Hahn, S.; Kim, S.; Lee, C.; Cho, M. J. Chem. Phys. 2005, 123, 084905.
20. Wang, J.; Chen, J.; Hochstrasser, R. M. J. Phys. Chem. B 2006, 110, 7545.
21. Mukherjee, P.; Kass, I.; Arkin, I.; Zanni, M. T. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 3528.
22. Sul, S.; Karaiskaj, D.; Jiang, Y.; Jiang, Y.; Ge, N. H. J. Phys. Chem. B 2006, 110, 19891.
23. Barth, A.; Zscherp, C. Q. Rev. Biophys. 2002, 35, 369.
24. Martinez, G.; Millhauser, G. J. Struct. Biol. 1995, 114, 23.
25. Manas, E. S.; Getahun, Z.; Wright, W. W.; DeGrado, W. F.; Vanderkooi, J. M. J. Am. Chem. Soc. 2000, 122, 9883.
26. Walsh, S. T. R.; Cheng, R. P.; Wright, W. W.; Alonso, D. O. V.; Daggett, V.; Vanderkooi, J. M.; DeGrado, W. F. Protein Sci. 2003, 12, 520.
27. Starzyk, A.; Barber-Armstrong, W.; Sridharan, M.; Decatur, S. M. Biochemistry 2005, 44, 369.
28. Maitra, A. J. Phys. Chem. 1984, 58, 5122.
29. Luisi, L. P. Angew. Chem., Int. Ed. Engl. 1985, 24, 439.
30. Freda, M.; Onori, G.; Paciaroni, A.; Santucci, A. J. Mol. Liq. 2002, 101, 55.
31. Senapati, S.; Chandra, A. J. Phys. Chem. B 2001, 105, 5106.
32. Levinger, N. E. Science 2002, 29, 1722.
33. Chowdhury, P. K.; Ashby, K. D.; Datta, A.; Petrich, J. W. Photochem. Photobiol. 2000, 72, 612.
34. Zhu, Y. J.; Fu, X. R.; Wang, T.; Tamura, A.; Takada, S.; Saven, J. G.; Gai, F. Chem. Phys. 2004, 307, 99.
35. Gnanakaran, S.; Hochstrasser, R. M.; Garcia, A. E. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 9229.
36. Reisdorf, W. C., Jr.; Krimm, S. Biochemistry 1996, 35, 1383.
37. Huang, C-Y.; Klemke, J. W.; Getahun, Z.; Degrado, W. F.; Gai, F. J. Am. Chem. Soc. 2001, 123, 9235.
38. Zulauf, M.; Eicke, H. F. J. Phys. Chem. 1979, 83, 480.
39. Byler, D. M.; Susi, H. Biopolymers 1986, 25, 469.
40. Surewicz, W.; Mantsch, H. H.; Chapman, D. Biochemistry 1993, 32, 389.
41. Dong, A.; Huang, P.; Caughey, W. S. Biochemistry 1990, 29, 3303.
42. Haris, P. I.; Chapman, D. Biopolymers 1995, 37, 251.
43. Tarus, B.; Straub, J. E.; Thirumalai, D. J. Mol. Biol. 2005, 345, 1141.
44. Tarus, B.; Straub, J. E.; Thirumalai, D. J. Am. Chem. Soc. 2006, 128, 16159.
45. Dzwolak, W.; Smirnovas, V. Biophys. Chem. 2005, 115, 49.
46. Massi, F.; Straub, J. E. J. Comput. Chem. 2003, 24, 143.
47. Jarrold, M. F. Annu. Rev. Phys. Chem. 2000, 51, 179.
48. Wyttenbach, T.; Dengfeng, L.; Bowers, M. T. Int. J. Mass Spectrom. 2005, 240, 221.
49. Arrondo, J. L.; Goni, F. M. Prog. Biophys. Mol. Biol. 1999, 72, 367.
50. Callender, R.; Dyer, R. B. Chem. Rev. 2006, 106, 3031.
51. Chen, R. P.; Spiro, T. G. J. Phys. Chem. A 2002, 106, 3413.
52. Parrish, J. R.; Blout, E. R. Biopolymers 1972, 11, 1001.
53. Venables, D. S.; Huang, K.; Schuttenmaer, C. A. J. Phys. Chem. B 2001, 105, 9132.
54. Dokter, A. M.; Woutersen, S.; Bakker, H. J. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 15355.
55. Nevskaya, N. A; Chirgadze, Y. N. Biopolymers 1976, 15, 637.
56. Bredenbeck, J.; Helbing, J.; Kumita, J. R.; Woolley, G. A.; Hamm, P. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 2379.
57. Huang, C-Y.; Getahun, Z.; Zhu, Y. J.; Klemke, J. W.; Degrado, W. F.; Gai, F. Proc. Natl. Acad. Sci. U.S.A. 2002; 99, 2788.
58. Zhu, Y. J.; Alonso, D. O. V.; Maki, K.; Huang, C-Y.; Lahr, S. J.; Daggett, V.; Roder, H.; DeGrado,-W. F.; Gai, F. F. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 15486.
59. Xu, Y.; Wang, T.; Gai, F. F. Chem. Phys. 2006, 323, 21.
60. 0 = 6 was further examined by CD spectroscppy. Consistent with the IR results, the CD spectrum (data not shown) obtained for the aggregates, which were generated by heating the desired peptide-AOT sample to 70 °C followed by cooling to 25 °C, showed the characteristic negative band at 216 nm for β-sheet structure.
61. Nguyen, H. D.; Marchut, A. J.; Hall, C. K. Protein Sci. 2004, 13, 2909.
62. Prestrelski, S. J.; Tedeschi, N.; Arakawa, T.; Carpenter, J. F. Biophys. J. 1993, 65, 661.
63. Fernández, A.; Scheraga, H. A. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 113.