-
1
-
-
0034676438
-
Repeated, recent and diverse transfers of a mitochondrial gene to the nucleus in flowering plants
-
Adams K.L., Daley D.O., Qiu Y.L., Whelan J., Palmer J.D. Repeated, recent and diverse transfers of a mitochondrial gene to the nucleus in flowering plants. Nature 2000, 408:354-357.
-
(2000)
Nature
, vol.408
, pp. 354-357
-
-
Adams, K.L.1
Daley, D.O.2
Qiu, Y.L.3
Whelan, J.4
Palmer, J.D.5
-
2
-
-
0035999379
-
Genes for two mitochondrial ribosomal proteins in flowering plants are derived from their chloroplast or cytosolic counterparts
-
Adams K.L., Daley D.O., Whelan J., Palmer J.D. Genes for two mitochondrial ribosomal proteins in flowering plants are derived from their chloroplast or cytosolic counterparts. Plant Cell 2002, 14:931-943.
-
(2002)
Plant Cell
, vol.14
, pp. 931-943
-
-
Adams, K.L.1
Daley, D.O.2
Whelan, J.3
Palmer, J.D.4
-
3
-
-
34249697574
-
Approaches for extracting practical information from gene co-expression networks in plant biology
-
Aoki K., Ogata Y., Shibata D. Approaches for extracting practical information from gene co-expression networks in plant biology. Plant Cell Physiol. 2007, 48:381-390.
-
(2007)
Plant Cell Physiol.
, vol.48
, pp. 381-390
-
-
Aoki, K.1
Ogata, Y.2
Shibata, D.3
-
4
-
-
45149125708
-
Genetic architecture of mitochondrial editing in Arabidopsis thaliana
-
Bentolila S., Elliott L.E., Hanson M.R. Genetic architecture of mitochondrial editing in Arabidopsis thaliana. Genetics 2008, 178:1693-1708.
-
(2008)
Genetics
, vol.178
, pp. 1693-1708
-
-
Bentolila, S.1
Elliott, L.E.2
Hanson, M.R.3
-
5
-
-
33244495781
-
Comparative analysis of bacterial-origin genes for plant mitochondrial ribosomal proteins
-
Bonen L., Calixte S. Comparative analysis of bacterial-origin genes for plant mitochondrial ribosomal proteins. Mol. Biol. Evol. 2006, 23:701-712.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 701-712
-
-
Bonen, L.1
Calixte, S.2
-
6
-
-
67650175499
-
LPA66 is required for editing psbF chloroplast transcripts in Arabidopsis
-
Cai W., et al. LPA66 is required for editing psbF chloroplast transcripts in Arabidopsis. Plant Physiol. 2009, 150:1260-1271.
-
(2009)
Plant Physiol.
, vol.150
, pp. 1260-1271
-
-
Cai, W.1
-
7
-
-
56049125182
-
CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts
-
Chateigner-Boutin A.L., et al. CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts. Plant J. 2008, 56:590-602.
-
(2008)
Plant J.
, vol.56
, pp. 590-602
-
-
Chateigner-Boutin, A.L.1
-
8
-
-
39749142161
-
The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites
-
Chaw S.M., Shih A.C., Wang D., Wu Y.W., Liu S.M., Chou T.Y. The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites. Mol. Biol. Evol. 2008, 25:603-615.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 603-615
-
-
Chaw, S.M.1
Shih, A.C.2
Wang, D.3
Wu, Y.W.4
Liu, S.M.5
Chou, T.Y.6
-
9
-
-
0030111369
-
Engineered GFP as a vital reporter in plants
-
Chiu W., Niwa Y., Zeng W., Hirano T., Kobayashi H., Sheen J. Engineered GFP as a vital reporter in plants. Curr. Biol. 1996, 6:325-330.
-
(1996)
Curr. Biol.
, vol.6
, pp. 325-330
-
-
Chiu, W.1
Niwa, Y.2
Zeng, W.3
Hirano, T.4
Kobayashi, H.5
Sheen, J.6
-
10
-
-
11144234440
-
Sequence and comparative analysis of the maize NB mitochondrial genome
-
Clifton S.W., et al. Sequence and comparative analysis of the maize NB mitochondrial genome. Plant Physiol. 2004, 136:3486-3503.
-
(2004)
Plant Physiol.
, vol.136
, pp. 3486-3503
-
-
Clifton, S.W.1
-
11
-
-
0032447801
-
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
-
Clough S.J., Bent A.F. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 1998, 16:735-743.
-
(1998)
Plant J.
, vol.16
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
12
-
-
0024419064
-
RNA editing in plant mitochondria
-
Covello P.S., Gray M.W. RNA editing in plant mitochondria. Nature 1989, 341:662-666.
-
(1989)
Nature
, vol.341
, pp. 662-666
-
-
Covello, P.S.1
Gray, M.W.2
-
13
-
-
37449010358
-
The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 Intron 1 in Arabidopsis thaliana
-
de Longevialle A.F., et al. The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 Intron 1 in Arabidopsis thaliana. Plant Cell 2007, 19:3256-3265.
-
(2007)
Plant Cell
, vol.19
, pp. 3256-3265
-
-
de Longevialle, A.F.1
-
14
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen M.B., Spellman P.T., Brown P.O., Botstein D. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. U. S. A. 1998, 95:14863-14868.
-
(1998)
Proc. Natl. Acad. Sci. U. S. A.
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
15
-
-
0034697980
-
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
-
Emanuelsson O., Nielsen H., Brunak S., von Heijne G. Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J. Mol. Biol. 2000, 300:1005-1016.
-
(2000)
J. Mol. Biol.
, vol.300
, pp. 1005-1016
-
-
Emanuelsson, O.1
Nielsen, H.2
Brunak, S.3
von Heijne, G.4
-
16
-
-
66149170345
-
Arabidopsis dynamin-related proteins DRP3A and DRP3B are functionally redundant in mitochondrial fission, but have distinct roles in peroxisomal fission
-
Fujimoto M., et al. Arabidopsis dynamin-related proteins DRP3A and DRP3B are functionally redundant in mitochondrial fission, but have distinct roles in peroxisomal fission. Plant J. 2009, 58:388-400.
-
(2009)
Plant J.
, vol.58
, pp. 388-400
-
-
Fujimoto, M.1
-
17
-
-
0033592907
-
RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs
-
Giege P., Brennicke A. RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs. Proc. Natl. Acad. Sci. U. S. A. 1999, 96:15324-15329.
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 15324-15329
-
-
Giege, P.1
Brennicke, A.2
-
18
-
-
0024414676
-
RNA editing in wheat mitochondria results in the conservation of protein sequences
-
Gualberto J.M., Lamattina L., Bonnard G., Weil J.H., Grienenberger J.M. RNA editing in wheat mitochondria results in the conservation of protein sequences. Nature 1989, 341:660-662.
-
(1989)
Nature
, vol.341
, pp. 660-662
-
-
Gualberto, J.M.1
Lamattina, L.2
Bonnard, G.3
Weil, J.H.4
Grienenberger, J.M.5
-
19
-
-
0344442430
-
The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana
-
Handa H. The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana. Nucleic Acids Res. 2003, 31:5907-5916.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 5907-5916
-
-
Handa, H.1
-
20
-
-
0024804414
-
RNA editing in plant mitochondria
-
Hiesel R., Wissinger B., Schuster W., Brennicke A. RNA editing in plant mitochondria. Science 1989, 246:1632-1634.
-
(1989)
Science
, vol.246
, pp. 1632-1634
-
-
Hiesel, R.1
Wissinger, B.2
Schuster, W.3
Brennicke, A.4
-
21
-
-
0036581417
-
GATEWAY vectors for Agrobacterium-mediated plant transformation
-
Karimi M., Inze D., Depicker A. GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci. 2002, 7:193-195.
-
(2002)
Trends Plant Sci.
, vol.7
, pp. 193-195
-
-
Karimi, M.1
Inze, D.2
Depicker, A.3
-
22
-
-
69249124548
-
Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria
-
Kim S.R., et al. Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria. Plant J. 2009, 59:738-749.
-
(2009)
Plant J.
, vol.59
, pp. 738-749
-
-
Kim, S.R.1
-
23
-
-
12744253474
-
A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts
-
Kotera E., Tasaka M., Shikanai T. A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts. Nature 2005, 433:326-330.
-
(2005)
Nature
, vol.433
, pp. 326-330
-
-
Kotera, E.1
Tasaka, M.2
Shikanai, T.3
-
24
-
-
0034235831
-
The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(Cys)(GCA)
-
Kubo T., Nishizawa S., Sugawara A., Itchoda N., Estiati A., Mikami T. The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(Cys)(GCA). Nucleic Acids Res. 2000, 28:2571-2576.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 2571-2576
-
-
Kubo, T.1
Nishizawa, S.2
Sugawara, A.3
Itchoda, N.4
Estiati, A.5
Mikami, T.6
-
25
-
-
0029867163
-
Protein polymorphism generated by differential RNA editing of a plant mitochondrial rps12 gene
-
Lu B., Wilson R.K., Phreaner C.G., Mulligan R.M., Hanson M.R. Protein polymorphism generated by differential RNA editing of a plant mitochondrial rps12 gene. Mol. Cell. Biol. 1996, 16:1543-1549.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 1543-1549
-
-
Lu, B.1
Wilson, R.K.2
Phreaner, C.G.3
Mulligan, R.M.4
Hanson, M.R.5
-
26
-
-
4043172772
-
Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis
-
Lurin C., et al. Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. Plant Cell 2004, 16:2089-2103.
-
(2004)
Plant Cell
, vol.16
, pp. 2089-2103
-
-
Lurin, C.1
-
27
-
-
33747613063
-
Patterns of partial RNA editing in mitochondrial genes of Beta vulgaris
-
Mower J.P., Palmer J.D. Patterns of partial RNA editing in mitochondrial genes of Beta vulgaris. Mol. Genet. Genomics 2006, 276:285-293.
-
(2006)
Mol. Genet. Genomics
, vol.276
, pp. 285-293
-
-
Mower, J.P.1
Palmer, J.D.2
-
28
-
-
0001924914
-
Abnormal growth and male sterility associated with mitochondrial DNA rearrangements in plants
-
R. G. Landes Company, Georgetown, K.K. Singh (Ed.)
-
Newton K.J., Gabay-Laughnan S.J. Abnormal growth and male sterility associated with mitochondrial DNA rearrangements in plants. Mitochondrial DNA Mutations in Aging, Disease and Cancer 1998, 365-381. R. G. Landes Company, Georgetown. K.K. Singh (Ed.).
-
(1998)
Mitochondrial DNA Mutations in Aging, Disease and Cancer
, pp. 365-381
-
-
Newton, K.J.1
Gabay-Laughnan, S.J.2
-
29
-
-
0033518256
-
Synexpression groups in eukaryotes
-
Niehrs C., Pollet N. Synexpression groups in eukaryotes. Nature 1999, 402:483-487.
-
(1999)
Nature
, vol.402
, pp. 483-487
-
-
Niehrs, C.1
Pollet, N.2
-
30
-
-
0036456491
-
The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants. Mol. Genet
-
Notsu Y., et al. The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants. Mol. Genet. Genomics 2002, 268:434-445.
-
(2002)
Genomics
, vol.268
, pp. 434-445
-
-
Notsu, Y.1
-
31
-
-
33846061087
-
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis
-
Obayashi T., et al. ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res. 2007, 35:D863-869.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Obayashi, T.1
-
32
-
-
58149197587
-
ATTED-II provides coexpressed gene networks for Arabidopsis
-
Obayashi T., Hayashi S., Saeki M., Ohta H., Kinoshita K. ATTED-II provides coexpressed gene networks for Arabidopsis. Nucleic Acids Res. 2009, 37:D987-991.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Obayashi, T.1
Hayashi, S.2
Saeki, M.3
Ohta, H.4
Kinoshita, K.5
-
33
-
-
28544439733
-
Structural dynamics of cereal mitochondrial genomes as revealed by complete nucleotide sequencing of the wheat mitochondrial genome
-
Ogihara Y., et al. Structural dynamics of cereal mitochondrial genomes as revealed by complete nucleotide sequencing of the wheat mitochondrial genome. Nucleic Acids Res. 2005, 33:6235-6250.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 6235-6250
-
-
Ogihara, Y.1
-
34
-
-
33845986746
-
A pentatricopeptide repeat protein is a site recognition factor in chloroplast RNA editing
-
Okuda K., Nakamura T., Sugita M., Shimizu T., Shikanai T. A pentatricopeptide repeat protein is a site recognition factor in chloroplast RNA editing. J. Biol. Chem. 2006, 281:37661-37667.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 37661-37667
-
-
Okuda, K.1
Nakamura, T.2
Sugita, M.3
Shimizu, T.4
Shikanai, T.5
-
35
-
-
34249938871
-
Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing
-
Okuda K., Myouga F., Motohashi R., Shinozaki K., Shikanai T. Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:8178-8183.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 8178-8183
-
-
Okuda, K.1
Myouga, F.2
Motohashi, R.3
Shinozaki, K.4
Shikanai, T.5
-
36
-
-
56049116911
-
Amino acid sequence variations in Nicotiana CRR4 orthologs determine the species-specific efficiency of RNA editing in plastids
-
Okuda K., Habata Y., Kobayashi Y., Shikanai T. Amino acid sequence variations in Nicotiana CRR4 orthologs determine the species-specific efficiency of RNA editing in plastids. Nucleic Acids Res. 2008, 36:6155-6164.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6155-6164
-
-
Okuda, K.1
Habata, Y.2
Kobayashi, Y.3
Shikanai, T.4
-
37
-
-
62549149035
-
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts
-
Okuda K., et al. Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts. Plant Cell 2009, 21:146-156.
-
(2009)
Plant Cell
, vol.21
, pp. 146-156
-
-
Okuda, K.1
-
38
-
-
44649133995
-
On the expansion of the pentatricopeptide repeat gene family in plants
-
O'Toole N., et al. On the expansion of the pentatricopeptide repeat gene family in plants. Mol. Biol. Evol. 2008, 25:1120-1128.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1120-1128
-
-
O'Toole, N.1
-
39
-
-
0035845008
-
Edited transcripts compete with unedited mRNAs for trans-acting editing factors in higher plant chloroplasts
-
Reed M.L., Lyi S.M., Hanson M.R. Edited transcripts compete with unedited mRNAs for trans-acting editing factors in higher plant chloroplasts. Gene 2001, 272:165-171.
-
(2001)
Gene
, vol.272
, pp. 165-171
-
-
Reed, M.L.1
Lyi, S.M.2
Hanson, M.R.3
-
40
-
-
66449092805
-
A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript
-
Robbins J.C., Heller W.P., Hanson M.R. A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript. RNA 2009, 15:1142-1153.
-
(2009)
RNA
, vol.15
, pp. 1142-1153
-
-
Robbins, J.C.1
Heller, W.P.2
Hanson, M.R.3
-
41
-
-
65349120245
-
RNA editing: only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal
-
Rudinger M., Funk H.T., Rensing S.A., Maier U.G., Knoop V. RNA editing: only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal. Mol. Genet. Genomics 2009, 281:473-481.
-
(2009)
Mol. Genet. Genomics
, vol.281
, pp. 473-481
-
-
Rudinger, M.1
Funk, H.T.2
Rensing, S.A.3
Maier, U.G.4
Knoop, V.5
-
42
-
-
0030221504
-
Altered mitochondrial gene expression in a maternal distorted leaf mutant of Arabidopsis induced by chloroplast mutator
-
Sakamoto W., Kondo H., Murata M., Motoyoshi F. Altered mitochondrial gene expression in a maternal distorted leaf mutant of Arabidopsis induced by chloroplast mutator. Plant Cell 1996, 8:1377-1390.
-
(1996)
Plant Cell
, vol.8
, pp. 1377-1390
-
-
Sakamoto, W.1
Kondo, H.2
Murata, M.3
Motoyoshi, F.4
-
43
-
-
56549095978
-
Pentatricopeptide repeat proteins: a socket set for organelle gene expression
-
Schmitz-Linneweber C., Small I. Pentatricopeptide repeat proteins: a socket set for organelle gene expression. Trends Plant Sci. 2008, 13:663-670.
-
(2008)
Trends Plant Sci.
, vol.13
, pp. 663-670
-
-
Schmitz-Linneweber, C.1
Small, I.2
-
44
-
-
0036726451
-
The plastid chromosome of Atropa belladonna and its comparison with that of Nicotiana tabacum: the role of RNA editing in generating divergence in the process of plant speciation
-
Schmitz-Linneweber C., Regel R., Du T.G., Hupfer H., Herrmann R.G., Maier R.M. The plastid chromosome of Atropa belladonna and its comparison with that of Nicotiana tabacum: the role of RNA editing in generating divergence in the process of plant speciation. Mol. Biol. Evol. 2002, 19:1602-1612.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1602-1612
-
-
Schmitz-Linneweber, C.1
Regel, R.2
Du, T.G.3
Hupfer, H.4
Herrmann, R.G.5
Maier, R.M.6
-
45
-
-
0036910328
-
A high-throughput Arabidopsis reverse genetics system
-
Sessions A., et al. A high-throughput Arabidopsis reverse genetics system. Plant Cell 2002, 14:2985-2994.
-
(2002)
Plant Cell
, vol.14
, pp. 2985-2994
-
-
Sessions, A.1
-
46
-
-
33645074681
-
RNA editing in plant organelles: machinery, physiological function and evolution
-
Shikanai T. RNA editing in plant organelles: machinery, physiological function and evolution. Cell. Mol. Life Sci. 2006, 63:698-708.
-
(2006)
Cell. Mol. Life Sci.
, vol.63
, pp. 698-708
-
-
Shikanai, T.1
-
47
-
-
0035474099
-
Nuclear genetic defects of oxidative phosphorylation
-
Shoubridge E.A. Nuclear genetic defects of oxidative phosphorylation. Hum. Mol. Genet. 2001, 10:2277-2284.
-
(2001)
Hum. Mol. Genet.
, vol.10
, pp. 2277-2284
-
-
Shoubridge, E.A.1
-
48
-
-
34547894695
-
Reconstructing the evolution of the mitochondrial ribosomal proteome
-
Smits P., Smeitink J.A., van den Heuvel L.P., Huynen M.A., Ettema T.J. Reconstructing the evolution of the mitochondrial ribosomal proteome. Nucleic Acids Res. 2007, 35:4686-4703.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 4686-4703
-
-
Smits, P.1
Smeitink, J.A.2
van den Heuvel, L.P.3
Huynen, M.A.4
Ettema, T.J.5
-
49
-
-
15044341867
-
The complete nucleotide sequence and multipartite organization of the tobacco mitochondrial genome: comparative analysis of mitochondrial genomes in higher plants
-
Sugiyama Y., et al. The complete nucleotide sequence and multipartite organization of the tobacco mitochondrial genome: comparative analysis of mitochondrial genomes in higher plants. Mol. Genet. Genomics 2005, 272:603-615.
-
(2005)
Mol. Genet. Genomics
, vol.272
, pp. 603-615
-
-
Sugiyama, Y.1
-
50
-
-
37249023728
-
The process of RNA editing in plant mitochondria
-
Takenaka M., Verbitskiy D., van der Merwe J.A., Zehrmann A., Brennicke A. The process of RNA editing in plant mitochondria. Mitochondrion 2008, 8:35-46.
-
(2008)
Mitochondrion
, vol.8
, pp. 35-46
-
-
Takenaka, M.1
Verbitskiy, D.2
van der Merwe, J.A.3
Zehrmann, A.4
Brennicke, A.5
-
51
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
52
-
-
0034821617
-
Comparative analysis of RNA editing sites in higher plant chloroplasts
-
Tsudzuki T., Wakasugi T., Sugiura M. Comparative analysis of RNA editing sites in higher plant chloroplasts. J. Mol. Evol. 2001, 53:327-332.
-
(2001)
J. Mol. Evol.
, vol.53
, pp. 327-332
-
-
Tsudzuki, T.1
Wakasugi, T.2
Sugiura, M.3
-
53
-
-
33750933992
-
Evidence for transit peptide acquisition through duplication and subsequent frameshift mutation of a preexisting protein gene in rice
-
Ueda M., Fujimoto M., Arimura S., Tsutsumi N., Kadowaki K. Evidence for transit peptide acquisition through duplication and subsequent frameshift mutation of a preexisting protein gene in rice. Mol. Biol. Evol. 2006, 23:2405-2412.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 2405-2412
-
-
Ueda, M.1
Fujimoto, M.2
Arimura, S.3
Tsutsumi, N.4
Kadowaki, K.5
-
54
-
-
0031021278
-
The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366, 924 nucleotides
-
Unseld M., Marienfeld J.R., Brandt P., Brennicke A. The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366, 924 nucleotides. Nat. Genet. 1997, 15:57-61.
-
(1997)
Nat. Genet.
, vol.15
, pp. 57-61
-
-
Unseld, M.1
Marienfeld, J.R.2
Brandt, P.3
Brennicke, A.4
-
55
-
-
37349038539
-
PPR336 is associated with polysomes in plant mitochondria
-
Uyttewaal M., et al. PPR336 is associated with polysomes in plant mitochondria. J. Mol. Biol. 2008, 375:626-636.
-
(2008)
J. Mol. Biol.
, vol.375
, pp. 626-636
-
-
Uyttewaal, M.1
-
56
-
-
0035234813
-
A mitochondrial paradigm for degenerative diseases and ageing
-
discussion 263-266
-
Wallace D.C. A mitochondrial paradigm for degenerative diseases and ageing. Novartis Found. Symp. 2001, 235:247-263. discussion 263-266.
-
(2001)
Novartis Found. Symp.
, vol.235
, pp. 247-263
-
-
Wallace, D.C.1
-
57
-
-
0023462635
-
Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs
-
Wolfe K.H., Li W.H., Sharp P.M. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc. Natl. Acad. Sci. U. S. A. 1987, 84:9054-9058.
-
(1987)
Proc. Natl. Acad. Sci. U. S. A.
, vol.84
, pp. 9054-9058
-
-
Wolfe, K.H.1
Li, W.H.2
Sharp, P.M.3
-
58
-
-
70349160461
-
AtECB2, a pentatricopeptide repeat protein, is required for chloroplast transcript accD RNA editing and early chloroplast biogenesis in Arabidopsis thaliana
-
Yu Q.B., Jiang Y., Chong K., Yang Z.N. AtECB2, a pentatricopeptide repeat protein, is required for chloroplast transcript accD RNA editing and early chloroplast biogenesis in Arabidopsis thaliana. Plant J. 2009, 59:1011-1023.
-
(2009)
Plant J.
, vol.59
, pp. 1011-1023
-
-
Yu, Q.B.1
Jiang, Y.2
Chong, K.3
Yang, Z.N.4
-
59
-
-
52749098506
-
Seven large variations in the extent of RNA editing in plant mitochondria between three ecotypes of Arabidopsis thaliana
-
Zehrmann A., van der Merwe J.A., Verbitskiy D., Brennicke A., Takenaka M. Seven large variations in the extent of RNA editing in plant mitochondria between three ecotypes of Arabidopsis thaliana. Mitochondrion 2008, 8:319-327.
-
(2008)
Mitochondrion
, vol.8
, pp. 319-327
-
-
Zehrmann, A.1
van der Merwe, J.A.2
Verbitskiy, D.3
Brennicke, A.4
Takenaka, M.5
-
60
-
-
64749105292
-
A DYW domain-containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana
-
Zehrmann A., Verbitskiy D., van der Merwe J.A., Brennicke A., Takenaka M. A DYW domain-containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana. Plant Cell 2009, 21:558-567.
-
(2009)
Plant Cell
, vol.21
, pp. 558-567
-
-
Zehrmann, A.1
Verbitskiy, D.2
van der Merwe, J.A.3
Brennicke, A.4
Takenaka, M.5
-
61
-
-
63349084758
-
The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth
-
Zhou W., et al. The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth. Plant J. 2008, 58:82-96.
-
(2008)
Plant J.
, vol.58
, pp. 82-96
-
-
Zhou, W.1
|