SCOPUS 정보 검색 플랫폼

Molecular BioSystems

Volumn 6, Issue 6, 2010, Pages 988-998

Inferring large-scale gene regulatory networks using a low-order constraint-based algorithm

(4) Wang, Mingyi a Augusto Benedito, Vagner a,b Xuechun Zhao, Patrick a Udvardi, Michael a

a PLANT BIOLOGY DIVISION (United States)

b WEST VIRGINIA UNIVERSITY (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BIOLOGICAL MODEL; BIOLOGY; COMPUTER SIMULATION; DNA MICROARRAY; ESCHERICHIA COLI; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE REGULATORY NETWORK; GENETIC DATABASE; GENETICS; METHODOLOGY; REGULON;

ALGORITHMS; COMPUTATIONAL BIOLOGY; COMPUTER SIMULATION; DATABASES, GENETIC; ESCHERICHIA COLI; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; GENE REGULATORY NETWORKS; MODELS, GENETIC; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REGULON;

ESCHERICHIA COLI;

EID: 77952516611 PISSN: 1742206X EISSN: 17422051 Source Type: Journal
DOI: 10.1039/b917571g Document Type: Article

Times cited : (11)

References (43)

1
- 0004047518
- Oxford University Press, New York, USA
- S. L. Lauritzen, Graphical Models, Oxford University Press, New York, USA, 1996
- (1996) Graphical Models
- Lauritzen, S.L.¹

2
- 0141993704
- J. M. Stuart E. Segal D. Koller S. K. Kim Science 2003 302 249 255
- (2003) Science , vol.302 , pp. 249-255
- Stuart, J.M.¹ Segal, E.² Koller, D.³ Kim, S.K.⁴

3
- 15944364151
- J. Schafer K. Strimmer Bioinformatics 2005 21 754 764
- (2005) Bioinformatics , vol.21 , pp. 754-764
- Schafer, J.¹ Strimmer, K.²

4
- 33947305781
- A. A. Margolin I. Nemenman K. Basso C. Wiggins G. Stolovitzky R. Dalla Favera A. Califano BMC Bioinformatics 2006 7 Suppl 1 S7
- (2006) BMC Bioinformatics , vol.7 , Issue.SUPPL. 1 , pp. 7
- Margolin, A.A.¹ Nemenman, I.² Basso, K.³ Wiggins, C.⁴ Stolovitzky, G.⁵ Dalla Favera, R.⁶ Califano, A.⁷

5
- 77952506981
- A. Wille P. Buhlmann Stat. Appl. Genet. Mol. Biol. 2006 5
- (2006) Stat. Appl. Genet. Mol. Biol. , vol.5
- Wille, A.¹ Buhlmann, P.²

6
- 54949156075
- A. Reverter E. K. Chan Bioinformatics 2008 24 2491 2497
- (2008) Bioinformatics , vol.24 , pp. 2491-2497
- Reverter, A.¹ Chan, E.K.²

7
- 77952487960
- S. Lebre Stat. Appl. Genet. Mol. Biol. 2009 8
- (2009) Stat. Appl. Genet. Mol. Biol. , vol.8
- Lebre, S.¹

8
- 0033707946
- N. Friedman M. Linial I. Nachman D. Pe'er J. Comput. Biol. 2000 7 601 620
- (2000) J. Comput. Biol. , vol.7 , pp. 601-620
- Friedman, N.¹ Linial, M.² Nachman, I.³ Pe'Er, D.⁴

9
- 34948816667
- M. Wang Z. Chen S. Cloutier Comput. Biol. Chem. 2007 31 361 372
- (2007) Comput. Biol. Chem. , vol.31 , pp. 361-372
- Wang, M.¹ Chen, Z.² Cloutier, S.³

10
- 33746035971
- I. Tsamardinos L. E. Brown C. F. Aliferis Mach. Learn. 2006 65 31 78
- (2006) Mach. Learn. , vol.65 , pp. 31-78
- Tsamardinos, I.¹ Brown, L.E.² Aliferis, C.F.³

11
- 0344464762
- D. Husmeier Bioinformatics 2003 19 2271 2282
- (2003) Bioinformatics , vol.19 , pp. 2271-2282
- Husmeier, D.¹

12
- 35948931439
- S. Ma Q. Gong H. J. Bohnert Genome Res. 2007 17 1614 1625
- (2007) Genome Res. , vol.17 , pp. 1614-1625
- Ma, S.¹ Gong, Q.² Bohnert, H.J.³

13
- 16844376909
- K. Basso A. Margolin G. Stolovitzky U. Klein R. Dalla-Favera A. Califano Nat. Genet. 2005 37 382 390
- (2005) Nat. Genet. , vol.37 , pp. 382-390
- Basso, K.¹ Margolin, A.² Stolovitzky, G.³ Klein, U.⁴ Dalla-Favera, R.⁵ Califano, A.⁶

14
- 22044448669
- A. Wille P. Zimmermann E. Vranova A. Furholz O. Laule S. Bleuler L. Hennig A. Prelic P. von Rohr L. Thiele E. Zitzler W. Gruissem P. Buhlmann Genome Biol. 2004 5 R92
- (2004) Genome Biol. , vol.5 , pp. 92
- Wille, A.¹ Zimmermann, P.² Vranova, E.³ Furholz, A.⁴ Laule, O.⁵ Bleuler, S.⁶ Hennig, L.⁷ Prelic, A.⁸ Von Rohr, P.⁹ Thiele, L.¹⁰ Zitzler, E.¹¹ Gruissem, W.¹² Buhlmann, P.¹³

15
- 25444476441
- C. J. Wolfe I. S. Kohane A. J. Butte BMC Bioinformatics 2005 6 227
- (2005) BMC Bioinformatics , vol.6 , pp. 227
- Wolfe, C.J.¹ Kohane, I.S.² Butte, A.J.³

16
- 38449088751
- F. Markowetz R. Spang BMC Bioinformatics 2007 8 Suppl 6 S5
- (2007) BMC Bioinformatics , vol.8 , Issue.SUPPL. 6 , pp. 5
- Markowetz, F.¹ Spang, R.²

17
- 0003614273
- MIT Press
- P. Spirtes, C. Glymour and R. Scheines, Causation, Prediction, and Search, MIT Press, 2000
- (2000) Causation, Prediction, and Search
- Spirtes, P.¹ Glymour, C.² Scheines, R.³

18
- 0344080086
- Prentice Hall Upper Saddle River, NJ
- R. Neapolitan, Learning Bayesian Networks, Prentice Hall Upper Saddle River, NJ, 2004
- (2004) Learning Bayesian Networks
- Neapolitan, R.¹

19
- 0002095306
- M. Herion, R. Schachter, L. Kanal and J. Lemmer
- T. Verma and J. Pearl, in Proceedings of the Sixth Annual Conference on Uncertainty in Artificial Intelligence, ed., M. Herion, R. Schachter, L. Kanal, and, J. Lemmer, 1990, 255 270
- (1990) Proceedings of the Sixth Annual Conference on Uncertainty in Artificial Intelligence, Ed. , pp. 255-270
- Verma, T.¹ Pearl In, J.²

20
- 0042496103
- D. Chickering J. Mach. Learn. Res. 2002 2 445 498
- (2002) J. Mach. Learn. Res. , vol.2 , pp. 445-498
- Chickering, D.¹

21
- 0002753068
- Montreal, QC, ed P. Besnard and S. Hanks
- C. Meek, Proceedings of the 11th Annual Conference on Uncertainty in Artificial Intelligence, Montreal, QC, ed, P. Besnard and S. Hanks, 1995, 403 441
- (1995) Proceedings of the 11th Annual Conference on Uncertainty in Artificial Intelligence , pp. 403-441
- Meek, C.¹

22
- 33947524259
- M. Kalisch P. Bühlmann J. Mach. Learn. Res. 2007 8 613 636
- (2007) J. Mach. Learn. Res. , vol.8 , pp. 613-636
- Kalisch, M.¹ Bühlmann, P.²

23
- 34547844096
- N. Soranzo G. Bianconi C. Altafini Bioinformatics 2007 23 1640 1647
- (2007) Bioinformatics , vol.23 , pp. 1640-1647
- Soranzo, N.¹ Bianconi, G.² Altafini, C.³

24
- 2942694772
- P. Mendes W. Sha K. Ye Bioinformatics 2003 19 Suppl 2 ii122 ii129
- (2003) Bioinformatics , vol.19 , Issue.SUPPL. 2
- Mendes, P.¹ Sha, W.² Ye, K.³

25
- 33749825955
- A. V. Werhli M. Grzegorczyk D. Husmeier Bioinformatics 2006 22 2523 2531
- (2006) Bioinformatics , vol.22 , pp. 2523-2531
- Werhli, A.V.¹ Grzegorczyk, M.² Husmeier, D.³

26
- 0000034390
- R. Mantaras and D. Poole
- D. Geiger and D. Heckerman, in Proceedings of the 10th Annual Conference on Uncertainty in Artificial Intelligence, ed, R. Mantaras and D. Poole, 1994, 235 243
- (1994) Proceedings of the 10th Annual Conference on Uncertainty in Artificial Intelligence, Ed , pp. 235-243
- Geiger, D.¹ Heckerman In, D.²

27
- 48849110444
- J. P. Pellet A. Elisseeff J. Mach. Learn. Res. 2008 9 1295 1342
- (2008) J. Mach. Learn. Res. , vol.9 , pp. 1295-1342
- Pellet, J.P.¹ Elisseeff, A.²

28
- 33644873438
- H. Salgado S. Gama-Castro M. Peralta-Gil E. Diaz-Peredo F. Sanchez-Solano A. Santos-Zavaleta I. Martinez-Flores V. Jimenez-Jacinto C. Bonavides-Martinez J. Segura-Salazar A. Martinez-Antonio J. Collado-Vides Nucleic Acids Res. 2006 34 D394 397
- (2006) Nucleic Acids Res. , vol.34 , pp. 394-397
- Salgado, H.¹ Gama-Castro, S.² Peralta-Gil, M.³ Diaz-Peredo, E.⁴ Sanchez-Solano, F.⁵ Santos-Zavaleta, A.⁶ Martinez-Flores, I.⁷ Jimenez-Jacinto, V.⁸ Bonavides-Martinez, C.⁹ Segura-Salazar, J.¹⁰ Martinez-Antonio, A.¹¹ Collado-Vides, J.¹²

29
- 33846400424
- J. J. Faith B. Hayete J. T. Thaden I. Mogno J. Wierzbowski G. Cottarel S. Kasif J. J. Collins T. S. Gardner PLoS Biol. 2007 5 e8
- (2007) PLoS Biol. , vol.5 , pp. 8
- Faith, J.J.¹ Hayete, B.² Thaden, J.T.³ Mogno, I.⁴ Wierzbowski, J.⁵ Cottarel, G.⁶ Kasif, S.⁷ Collins, J.J.⁸ Gardner, T.S.⁹

30
- 49549104230
- F. Mordelet J.-P. Vert Bioinformatics 2008 24 i76 82
- (2008) Bioinformatics , vol.24 , pp. 76-82
- Mordelet, F.¹ Vert, J.-P.²

31
- 41849115550
- J. Ernst Q. K. Beg K. A. Kay G. Balazsi Z. N. Oltvai Z. Bar-Joseph PLoS Comput. Biol. 2008 4 e1000044
- (2008) PLoS Comput. Biol. , vol.4 , pp. 1000044
- Ernst, J.¹ Beg, Q.K.² Kay, K.A.³ Balazsi, G.⁴ Oltvai, Z.N.⁵ Bar-Joseph, Z.⁶

32
- 33746059357
- H. Jiang L. Shang S. H. Yoon S. Y. Lee Z. Yu Biotechnol. Lett. 2006 28 1241 1246
- (2006) Biotechnol. Lett. , vol.28 , pp. 1241-1246
- Jiang, H.¹ Shang, L.² Yoon, S.H.³ Lee, S.Y.⁴ Yu, Z.⁵

33
- 4444379797
- M. S. Kabir T. Sagara T. Oshima Y. Kawagoe H. Mori R. Tsunedomi M. Yamada Microbiology 2004 150 2543 2553
- (2004) Microbiology , vol.150 , pp. 2543-2553
- Kabir, M.S.¹ Sagara, T.² Oshima, T.³ Kawagoe, Y.⁴ Mori, H.⁵ Tsunedomi, R.⁶ Yamada, M.⁷

34
- 0036035414
- T. A. Blauwkamp A. J. Ninfa Mol. Microbiol. 2002 46 203 214
- (2002) Mol. Microbiol. , vol.46 , pp. 203-214
- Blauwkamp, T.A.¹ Ninfa, A.J.²

35
- 0035875010
- S. Kalir J. McClure K. Pabbaraju C. Southward M. Ronen S. Leibler M. G. Surette U. Alon Science 2001 292 2080 2083
- (2001) Science , vol.292 , pp. 2080-2083
- Kalir, S.¹ McClure, J.² Pabbaraju, K.³ Southward, C.⁴ Ronen, M.⁵ Leibler, S.⁶ Surette, M.G.⁷ Alon, U.⁸

36
- 0029976326
- M. Ochs A. Angerer S. Enz V. Braun Mol. Gen. Genet. 1996 250 455 465
- (1996) Mol. Gen. Genet. , vol.250 , pp. 455-465
- Ochs, M.¹ Angerer, A.² Enz, S.³ Braun, V.⁴

37
- 0035180675
- A. Stiefel S. Mahren M. Ochs P. T. Schindler S. Enz V. Braun J. Bacteriol. 2001 183 162 170
- (2001) J. Bacteriol. , vol.183 , pp. 162-170
- Stiefel, A.¹ Mahren, S.² Ochs, M.³ Schindler, P.T.⁴ Enz, S.⁵ Braun, V.⁶

38
- 0034609791
- H. Jeong B. Tombor R. Albert Z. N. Oltvai A. L. Barabasi Nature 2000 407 651 654
- (2000) Nature , vol.407 , pp. 651-654
- Jeong, H.¹ Tombor, B.² Albert, R.³ Oltvai, Z.N.⁴ Barabasi, A.L.⁵

39
- 0242574985
- M. J. Herrgard M. W. Covert B. O. Palsson Genome Res. 2003 13 2423 2434
- (2003) Genome Res. , vol.13 , pp. 2423-2434
- Herrgard, M.J.¹ Covert, M.W.² Palsson, B.O.³

40
- 68149168970
- E. Szczurek I. Gat-Viks J. Tiuryn M. Vingron Mol. Syst. Biol. 2009 5 287
- (2009) Mol. Syst. Biol. , vol.5 , pp. 287
- Szczurek, E.¹ Gat-Viks, I.² Tiuryn, J.³ Vingron, M.⁴

41
- 0004194893
- T. Richardson and P. Spirtes, Computation, Causation, and Discovery, 1999, pp. 253-304
- (1999) Computation, Causation, and Discovery , pp. 253-304
- Richardson, T.¹ Spirtes, P.²

42
- 0004158155
- University of California, Berkeley
- K. Murphy and S. Mian, technique report, Modelling Gene Expression Data using Dynamic Bayesian Networks, University of California, Berkeley, 1999
- (1999) Modelling Gene Expression Data Using Dynamic Bayesian Networks
- Murphy, K.¹

43
- 70349548793
- T. E. M. Nordling E. W. Jacobsen IET Syst. Biol. 2009 3 388 405
- (2009) IET Syst. Biol. , vol.3 , pp. 388-405
- Nordling, T.E.M.¹ Jacobsen, E.W.²

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.