In situ Synthesis of DNA Microarray on Functionalized Cyclic Olefin Copolymer Substrate

ACS Applied Materials and Interfaces

Volumn 2, Issue 2, 2010, Pages 491-497

  Saaem, Ishtiaq ^a,b   Ma, Kuo Sheng ^a,b   Marchi, Alexandria N ^a   LaBean, Thomas H ^a,b,c   Tian, Jingdong ^a,b  

^a Duke University   (United States)

^b DUKE UNIVERSITY   (United States)

^c Duke University   (United States)

Author keywords

COC; DNA microarray; DNA origami; DNA synthesis; Microfluidics; Synthetic biology

Indexed keywords

BIOANALYTICAL; BIOFABRICATION; COC; CYCLIC OLEFIN COPOLYMERS; DNA MICRO-ARRAY; DNA OLIGONUCLEOTIDES; DNA SYNTHESIS; DNA SYNTHESISS; FILM ARRAYS; FUNCTIONALIZED; FURTHER DEVELOPMENT; HIGH QUALITY; HYBRIDIZATION ASSAY; IN-SITU; IN-SITU SYNTHESIS; INDUSTRIAL SCALE; MICRO DEVICES; MICROARRAY SUBSTRATES; OLEFIN COPOLYMERS; PHOSPHORAMIDITES; PRECISION DELIVERY; RF-SPUTTERING; SILICON SUBSTRATES; SYNTHETIC BIOLOGY; THERMOPLASTIC MATERIALS;

BIOASSAY; BIOCHIPS; COPOLYMERIZATION; COPOLYMERS; LAKES; MICROFLUIDICS; NUCLEIC ACIDS; OLEFINS; OLIGONUCLEOTIDES; RAPID PROTOTYPING; SILICON COMPOUNDS; SILICON OXIDES; SUBSTRATES; THIN FILMS;

DNA;

CYCLOALKANE DERIVATIVE; DNA; POLYMER;

ARTICLE; ARTIFICIAL MEMBRANE; CHEMISTRY; DNA MICROARRAY; EQUIPMENT; EQUIPMENT DESIGN; EVALUATION; GENETICS; INSTRUMENTATION;

CYCLOPARAFFINS; DNA; EQUIPMENT DESIGN; EQUIPMENT FAILURE ANALYSIS; MEMBRANES, ARTIFICIAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMERS;

EID: 77952312451     PISSN: 19448244     EISSN: 19448252     Source Type: Journal    
DOI: 10.1021/am900884b     Document Type: Article

References (53)

1. Dobson, M. G.; Galvin, P.; Barton, D. E. Exp. Rev. Mol. Diagn. 2007, 7, 359-370.
2. Hoheisel, J. D. Nat. Rev. Genet. 2006, 7, 200-210.
3. Lockhart, D. J.; Winzeler, E. A. Nature 2000, 405, 827-836.
4. Shi, L.; Perkins, R. G.; Tong, W. The Current Status of DNA Microarrays. In Microarrays; Integrated Analytical Systems Series; Springer: New York, 2009; pp 3-24.
5. Tian, J.; Ma, K.; Saaem, I. Mol. BioSyst. 2009, 5, 714-722.
6. Dahlgren, C.; Zhang, H. Y.; Du, Q.; Grahn, M.; Norstedt, G.; Wahlestedt, C.; Liang, Z. Nucleic Acids Res. 2008, 36, e53.
7. Richmond, K. E.; Li, M.-H.; Rodesch, M. J.; Patel, M.; Lowe, A. M.; Kim, C.; Chu, L. L.; Venkataramaian, N.; Flickinger, S. F.; Kaysen, J.; Belshaw, P. J.; Sussman, M. R.; Cerrina, F. Nucleic Acids Res. 2004, 32, 5011-5018.
8. Tian, J.; Gong, H.; Sheng, N.; Zhou, X.; Gulari, E.; Gao, X.; Church, G. Nature 2004, 432, 1050-1054.
9. Zhou, X.; Cai, S.; Hong, A.; You, Q.; Yu, P.; Sheng, N.; Srivannavit, O.; Muranjan, S.; Rouillard, J. M.; Xia, Y.; Zhang, X.; Xiang, Q.; Ganesh, R.; Zhu, Q.; Matejko, A.; Gulari, E.; Gao, X. Nucleic Acids Res. 2004, 32, 5409-5417.
10. Diaz-Quijada, G. A.; Peytavi, R.; Nantel, A.; Roy, E.; Bergeron, M. G.; Dumoulin, M. M.; Veres, T. Lab Chip 2007, 7, 856-862.
11. Geissler, M.; Roy, E.; Diaz-Quijada, G. A.; Galas, J.-C.; Veres, T. ACS Appl. Mater. Interfaces 2009, 1, 1387-1395.
12. Li, Y.; Wang, Z.; Ou, L. M. L.; Yu, H.-Z. Anal. Chem. 2006, 79, 426-433.
13. Raj, J.; Herzog, G.; Manning, M.; Volcke, C.; MacCraith, B. D.; Ballantyne, S.; Thompson, M.; Arrigan, D. W. M. Biosens. Bioelectron. 2009, 24, 2654-2658.
14. Sauer-Budge, A. F.; Mirer, P.; Chatterjee, A.; Klapperich, C. M.; Chargin, D.; Sharon, A. Lab Chip 2009, 9, 2803-2810.
15. Zhao, Z.; Peytavi, R.; Diaz-Quijada, G. A.; Picard, F. J.; Huletsky, A.; Leblanc, E.; Frenette, J.; Boivin, G.; Veres, T.; Dumoulin, M. M.; Bergeron, M. G. J. Clin. Microbiol. 2008, 46, 3752-3758.
16. Cretich, M.; Di Carlo, G.; Giudici, C.; Pokoj, S.; Lauer, I.; Scheurer, S.; Chiari, M. Proteomics 2009, 9, 2098-2107.
17. Heyries, K. A.; Loughran, M. G.; Hoffmann, D.; Homsy, A.; Blum, L. J.; Marquette, C. A. Biosens. Bioelectron. 2008, 23, 1812-1818.
18. Situma, C.; Hashimoto, M.; Soper, S. A. Biomol. Eng. 2006, 23, 213-231.
19. Srivannavit, O.; Gulari, M.; Hua, Z. S.; Gao, X. L.; Zhou, X. C.; Hong, A. L.; Zhou, T. C.; Gulari, E. Sens. Actuators, B 2009, 140, 473-481.
20. Bhattacharyya, A.; Klapperich, C. M. Anal. Chem. 2005, 78, 788-792.
21. Jagannathan, N.; Papautsky, I. J. Micromech. Microeng. 2004, 14, 96-103.
22. Klapperich, C. M. Exp. Rev. Med. Devic. 2009, 6, 211-213.
23. Wang, W.; Soper, S. A., Bio-MEMS: Technologies and Applications, 1st ed.; CRC: Boca Raton, FL, 2006; pp 117-141.
24. Becker, H.; Gärtner, C. Anal. Bioanal. Chem. 2008, 390, 89-111.
25. Lamonte, R. R.; McNally, D. Plast. Eng. 2000, 56, 51-55.
26. Lamonte, R. R.; McNally, D. Adv. Mater. Processes 2001, 159, 33-36.
27. Bedair, M. F.; Oleschuk, R. D. Anal. Chem. 2006, 78, 1130-1138.
28. Gaudioso, J.; Craighead, H. G. J. Chromatogr., A 2002, 971, 249-253.
29. Hu, S. W.; Ren, X. Q.; Bachman, M.; Sims, C. E.; Li, G. P.; Allbritton, N. L. Anal. Chem. 2004, 76, 1865-1870.
30. Laib, S.; MacCraith, B. D. Anal. Chem. 2007, 79, 6264-6270.
31. Mair, D. A.; Geiger, E.; Pisano, A. P.; Frechet, J. M. J.; Svec, F. Lab Chip 2006, 6, 1346-1354.
32. Nikolova, D.; Dayss, E.; Leps, G.; Wutzler, A. Surf. Interface Anal. 2004, 36, 689-693.
33. Rohr, T.; Ogletree, D. F.; Svec, F.; Frechet, J. M. J. Adv. Funct. Mater. 2003, 13, 264-270.
34. Sun, Q. C.; Zhang, D. D.; Wadsworth, L. C.; Tappi, J. 1998, 81, 177-183.
35. Tsao, C. W.; Hromada, L.; Liu, J.; Kumar, P.; DeVoe, D. L. Lab Chip 2007, 7, 499-505.
36. Bi, H.; Meng, S.; Li, Y.; Guo, K.; Chen, Y.; Kong, J.; Yang, P.; Zhong, W.; Liu, B. Lab Chip 2006, 6, 769-775.
37. Fixe, F.; Dufva, M.; Telleman, P.; Christensen, C. B. V. Lab Chip 2004, 4, 191-195.
38. Kimura, N. Biochem. Biophys. Res. Commun. 2006, 347, 477-484.
39. Kinoshita, K.; Fujimoto, K.; Yakabe, T.; Saito, S.; Hamaguchi, Y.; Kikuchi, T.; Nonaka, K.; Murata, S.; Masuda, D.; Takada, W.; Funaoka, S.; Arai, S.; Nakanishi, H.; Yokoyama, K.; Fujiwara, K.; Matsubara, K. Nucleic Acids Res. 2007, 35, e3.
40. Lin, R.; Burns, M. A. J. Micromech. Microeng. 2005, 15, 2156-2162.
41. Nagino, K.; Nomura, O.; Takii, Y.; Myomoto, A.; Ichikawa, M.; Nakamura, F.; Higasa, M.; Akiyama, H.; Nobumasa, H.; Shiojima, S.; Tsujimoto, G. J. Biochem. 2006, 139, 697-703.
42. Pu, Q.; Oyesanya, O.; Thompson, B.; Liu, S.; Alvarez, J. C. Langmuir 2007, 23, 1577-1583.
43. Ma, K.-S.; Reza, F.; Saaem, I.; Tian, J. J. Mater. Chem. 2009, 19, 7914-7920.
44. Lausted, C.; Dahl, T.; Warren, C.; King, K.; Smith, K.; Johnson, M.; Saleem, R.; Aitchison, J.; Hood, L.; Lasky, S. Genome Biol. 2004, 5, R58.
45. Saaem, I.; Papasotiropoulos, V.; Wang, T.; Soteropoulos, P.; Libera, M. J. Nanosci. Nanotechnol. 2007, 7, 2623-2632.
46. Rothemund, P. W. Nature 2006, 440, 297-302.
47. Cohen, G.; Deutsch, J.; Fineberg, J.; Levine, A. Nucleic Acids Res. 1997, 25, 911-912.
48. Dufva, M. Biomol. Eng. 2005, 22, 173-184.
49. Garland, P. B.; Serafinowski, P. J. Nucleic Acids Res. 2002, 30, e99.
50. Illa, X.; Malsche, W. D.; Bomer, J.; Gardeniers, H.; Eijkel, J.; Morante, J. R.; Romano-Rodriguez, A.; Desmet, G. Lab Chip 2009, 9, 1511-1516.
51. Myers, F. B.; Lee, L. P. Lab Chip 2008, 8, 2015-2031.
52. Phillips, M. F.; Lockett, M. R.; Rodesch, M. J.; Shortreed, M. R.; Cerrina, F.; Smith, L. M. Nucleic Acids Res. 2008, 36, e7.
53. Adessi, C.; Matton, G.; Ayala, G.; Turcatti, G.; Mermod, J.-J.; Mayer, P.; Kawashima, E. Nucleic Acids Res. 2000, 28, e87.