Plastic polymers for efficient DNA microarray hybridization: Application to microbiological diagnostics

Journal of Clinical Microbiology

Volumn 46, Issue 11, 2008, Pages 3752-3758

  Zhao, Zhengshan ^a   Peytavi, Régis ^a   Diaz Quijada, Gerardo A ^b   Picard, Francois J ^a   Huletsky, Ann ^a   Leblanc, Éric ^a   Frenette, Johanne ^a   Boivin, Guy ^a   Veres, Teodor ^b   Dumoulin, Michel M ^b   Bergeron, Michel G ^a  

^a LAVAL UNIVERSITY   (Canada)

^b NATIONAL RESEARCH COUNCIL CANADA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

FLUORESCENT DYE; GLASS; PLASTIC; POLY(METHYL METHACRYLATE); POLYMER; VIRUS DNA; VIRUS RNA;

ARTICLE; DIAGNOSTIC PROCEDURE; DNA HYBRIDIZATION; DNA MICROARRAY; GENE AMPLIFICATION; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; PROTEIN FOLDING; RESPIRATORY VIRUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; RNA TRANSCRIPTION; VIRUS CULTURE;

EID: 55849152006     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.00377-08     Document Type: Article

References (25)

1. Borg, I., G. Rohde, S. Loseke, J. Bittscheidt, G. Schultze- Werninghaus, V. Stephan, and A. Bufe. 2003. Evaluation of a quantitative real-time PCR for the detection of respiratory syncytial virus in pulmonary diseases. Eur. Respir. J. 21:944-951.
2. Diaz-Quijada, G. A., R. Peytavi, A. Nantel, E. Roy, M. G. Bergeron, M. M. Dumoulin, and T. Veres. 2007. Surface modification of thermoplastics - towards the plastic biochip for high throughput screening devices. Lab Chip 7:856-862.
3. Falsey, A. R., M. A. Formica, J. J. Treanor, and E. E. Walsh. 2003. Comparison of quantitative reverse transcription-PCR to viral culture for assessment of respiratory syncytial virus shedding. J. Clin. Microbiol. 41:4160-4165.
4. Fixe, F., H. M. Branz, N. Louro, V. Chu, D. M. Prazeres, and J. P. Conde. 2004. Immobilization and hybridization by single sub-millisecond electric field pulses, for pixel-addressed DNA microarrays. Biosens. Bioelectron. 19:1591-1597.
5. Fixe, F., M. Dufva, P. Telleman, and C. B. Christensen. 2004. Functionalization of poly(methyl methacrylate) (PMMA) as a substrate for DNA microarrays. Nucleic Acids Res. 32:e9.
6. Fixe, F., M. Dufva, P. Telleman, and C. B. Christensen. 2004. One-step immobilization of aminated and thiolated DNA onto poly(methylmethacrylate) (PMMA) substrates. Lab Chip 4:191-195.
7. Fukiya, S., H. Mizoguchi, T. Tobe, and H. Mori. 2004. Extensive genomic diversity in pathogenic Escherichia coli and Shigella strains revealed by comparative genomic hybridization microarray. J. Bacteriol. 186:3911-3921.
8. Hsia, C. C., V. E. Chizhikov, A. X. Yang, A. Selvapandiyan, I. Hewlett, R. Duncan, R. K. Puri, H. L. Nakhasi, and G. G. Kaplan. 2007. Microarray multiplex assay for the simultaneous detection and discrimination of hepatitis B, hepatitis C, and human immunodeficiency type-1 viruses in human blood samples. Biochem. Biophys. Res. Commun. 356:1017-1023.
9. Kimura, N. 2006. One-step immobilization of poly(dT)-modified DNA onto non-modified plastic substrates by UV irradiation for microarrays. Biochem. Biophys. Res. Commun. 347:477-484.
10. Kinoshita, K., K. Fujimoto, T. Yakabe, S. Saito, Y. Hamaguchi, T. Kikuchi, K. Nonaka, S. Murata, D. Masuda, W. Takada, S. Funaoka, S. Arai, H. Nakanishi, K. Yokoyama, K. Fujiwara, and K. Matsubara. 2007. Multiple primer extension by DNA polymerase on a novel plastic DNA array coated with a biocompatible polymer. Nucleic Acids Res. 35:e3.
11. Lenigk, R., R. H. Liu, M. Athavale, Z. Chen, D. Ganser, J. Yang, C. Rauch, Y. Liu, B. Chan, H. Yu, M. Ray, R. Marrero, and P. Grodzinski. 2002. Plastic biochannel hybridization devices: a new concept for microfluidic DNA arrays. Anal. Biochem. 311:40-49.
12. Letowski, J., R. Brousseau, and L. Masson. 2003. DNA microarray applications in environmental microbiology. Anal. Lett. 36:3165-3184.
13. Li, Y., Z. Wang, L. M. Ou, and H. Z. Yu. 2007. DNA detection on plastic: surface activation protocol to convert polycarbonate substrates to biochip platforms. Anal. Chem. 79:426-433.
14. Lin, B., G. J. Vora, D. Thach, E. Walter, D. Metzgar, C. Tibbetts, and D. A. Stenger. 2004. Use of oligonucleotide microarrays for rapid detection and serotyping of acute respiratory disease-associated adenoviruses. J. Clin. Microbiol. 42:3232-3239.
15. Liu, R. H., and P. Grodzinski. 2003. Development of integrated microfluidic system for genetic analysis. J. Microlith. Microfab. Microsyst. 2:340-354.
16. Liu, Y., and C. B. Rauch. 2003. DNA probe attachment on plastic surfaces and microfluidic hybridization array channel devices with sample oscillation. Anal. Biochem. 317:76-84.
17. Masson, L., C. Maynard, R. Brousseau, S. H. Goh, S. M. Hemmingsen, J. E. Hill, A. Paccagnella, R. Oda, and N. Kimura. 2006. Identification of pathogenic Helicobacter species by chaperonin-60 differentiation on plastic DNA arrays. Genomics 87:104-112.
18. Michikawa, Y., K. Fujimoto, K. Kinoshita, S. Kawai, K. Sugahara, T. Suga, Y. Otsuka, K. Fujiwara, M. Iwakawa, and T. Imai. 2006. Reliable and fast allele-specific extension of 3′-LNA modified oligonucleotides covalently immobilized on a plastic base, combined with biotin-dUTP mediated optical detection. Anal. Sci. 22:1537-1545.
19. Nagino, K., O. Nomura, Y. Takii, A. Myomoto, M. Ichikawa, F. Nakamura, M. Higasa, H. Akiyama, H. Nobumasa, S. Shiojima, and G. Tsujimoto. 2006. Ultrasensitive DNA chip: gene expression profile analysis without RNA amplification. J. Biochem. (Tokyo) 139:697-703.
20. Peytavi, R., F. R. Raymond, D. Gagné, F. J. Picard, G. Jia, J. Zoval, M. Madou, K. Boissinot, M. Boissinot, L. Bissonnette, M. Ouellette, and M. G. Bergeron. 2005. Microfluidic device for rapid (<15 min) automated microarray hybridization. Clin. Chem. 51:1836-1844.
21. Sergeev, N., D. Volokhov, V. Chizhikov, and A. Rasooly. 2004. Simultaneous analysis of multiple staphylococcal enterotoxin genes by an oligonucleotide microarray assay. J. Clin. Microbiol. 42:2134-2143.
22. Soper, S. A., M. Hashimoto, C. Situma, M. C. Murphy, R. L. McCarley, Y. W. Cheng, and F. Barany. 2005. Fabrication of DNA microarrays onto polymer substrates using UV modification protocols with integration into microfluidic platforms for the sensing of low-abundant DNA point mutations. Methods 37:103-113.
23. Wang, Y., B. Vaidya, H. D. Farquar, W. Stryjewski, R. P. Hammer, R. L. McCarley, S. A. Soper, Y. W. Cheng, and F. Barany. 2003. Microarrays assembled in microfluidic chips fabricated from poly(methyl methacrylate) for the detection of low-abundant DNA mutations. Anal. Chem. 75:1130-1140.
24. Wang, Z., L. T. Daum, G. J. Vora, D. Metzgar, E. A. Walter, L. C. Canas, A. P. Malanoski, B. Lin, and D. A. Stenger. 2006. Identifying influenza viruses with resequencing microarrays. Emerg Infect. Dis. 12:638-646.
25. Wei, C. W., J. Y. Cheng, C. T. Huang, M. H. Yen, and T. H. Young. 2005. Using a microfluidic device for 1 microl DNA microarray hybridization in 500 s. Nucleic Acids Res. 33:e78.