-
1
-
-
29144445330
-
PCR-induced sequence artifacts and bias: Insights from comparison of two 16S rRNA clone libraries constructed the same sample
-
Acinas SG, Sarma-Rupavtarm R, Klepac-Ceraj V, Polz MF (2005) PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed the same sample. Appl Environ Microbiol 71: 8966-8969.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 8966-8969
-
-
Acinas, S.G.1
Sarma-Rupavtarm, R.2
Klepac-Ceraj, V.3
Polz, M.F.4
-
2
-
-
0031252212
-
On the origins of the tetraploid Bromus species (section Bromus, Poaceae): Insights from the internal transcribed spacer sequences of nuclear ribosomal DNA
-
Ainouche ML, Bayes RJ (1997) On the origins of the tetraploid Bromus species (section Bromus, Poaceae): insights from the internal transcribed spacer sequences of nuclear ribosomal DNA. Genome 40: 730-743.
-
(1997)
Genome
, vol.40
, pp. 730-743
-
-
Ainouche, M.L.1
Bayes, R.J.2
-
3
-
-
0000270001
-
The ITS region of nuclear ribosomal DNA: A valuable source of evidence on angiosperm phylogeny
-
Baldwin BG, Sanderson MJ, Porter JM, Wojciechowski MF, Campbell CS, Donoghue MJ (1995) The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Ann Mo Bot Gard 82: 247-277.
-
(1995)
Ann Mo Bot Gard
, vol.82
, pp. 247-277
-
-
Baldwin, B.G.1
Sanderson, M.J.2
Porter, J.M.3
Wojciechowski, M.F.4
Campbell, C.S.5
Donoghue, M.J.6
-
4
-
-
0033771358
-
TCS: A computer program to estimate gene genealogies
-
Clement M, Posada D, Crandall K (2000) TCS: a computer program to estimate gene genealogies. Mol Ecol 9: 1657-1659.
-
(2000)
Mol Ecol
, vol.9
, pp. 1657-1659
-
-
Clement, M.1
Posada, D.2
Crandall, K.3
-
5
-
-
53149138205
-
Hybridization of the marine seaweeds, Fucus serratus and F. evanescens (Heterokontophyta: Phaeophyceae) in a century-old zone of secondary contact
-
Coyer JA, Peters AF, Hoarau G, Stam WT, Olesn JL (2002) Hybridization of the marine seaweeds, Fucus serratus and F. evanescens (Heterokontophyta: Phaeophyceae) in a century-old zone of secondary contact. Proc R Soc Lond Biol Sci 269: 1829-1834.
-
(2002)
Proc R Soc Lond Biol Sci
, vol.269
, pp. 1829-1834
-
-
Coyer, J.A.1
Peters, A.F.2
Hoarau, G.3
Stam, W.T.4
Olesn, J.L.5
-
6
-
-
35448980848
-
Hybridization and introgression in a mixed population of the intertidal seaweeds Fucus evanescens and F. serratus
-
Coyer JA, Hoarau G, Stam WT, Olsen JL (2007) Hybridization and introgression in a mixed population of the intertidal seaweeds Fucus evanescens and F. serratus. J Evol Biol 20: 2322-2333.
-
(2007)
J Evol Biol
, vol.20
, pp. 2322-2333
-
-
Coyer, J.A.1
Hoarau, G.2
Stam, W.T.3
Olsen, J.L.4
-
7
-
-
2142815111
-
Fine scale geographic structure, intra-individual polymorphism and recombination in nuclear ribosomal internal transcribed spacers in Armeria (Plumbaginaceae)
-
Feliner GN, Larena BG, Aguilar JF (2004) Fine scale geographic structure, intra-individual polymorphism and recombination in nuclear ribosomal internal transcribed spacers in Armeria (Plumbaginaceae). Ann Bot 93: 189-200.
-
(2004)
Ann Bot
, vol.93
, pp. 189-200
-
-
Feliner, G.N.1
Larena, B.G.2
Aguilar, J.F.3
-
8
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-793.
-
(1985)
Evolution
, vol.39
, pp. 783-793
-
-
Felsenstein, J.1
-
9
-
-
33847199369
-
Molecular identification of Chinese cultivated Porphyra (Bangiaceae, Rhodophyta) based on the rDNA internal transcribed spacer-1 sequence and random amplified polymorphic DNA markers
-
Hu ZM, He YJ, Xia P, Duan DL (2007) Molecular identification of Chinese cultivated Porphyra (Bangiaceae, Rhodophyta) based on the rDNA internal transcribed spacer-1 sequence and random amplified polymorphic DNA markers. Mar Biol Res 3: 20-28.
-
(2007)
Mar Biol Res
, vol.3
, pp. 20-28
-
-
Hu, Z.M.1
He, Y.J.2
Xia, P.3
Duan, D.L.4
-
10
-
-
0031436890
-
Phylogeny estimation and hypothesis testing using maximum likelihood
-
Huelsenbeck JP, Crandall KA (1997) Phylogeny estimation and hypothesis testing using maximum likelihood. Ann Rev Ecol Syst 28: 437-466.
-
(1997)
Ann Rev Ecol Syst
, vol.28
, pp. 437-466
-
-
Huelsenbeck, J.P.1
Crandall, K.A.2
-
11
-
-
33847211611
-
DNA sequences and identification of Porphyra cultivated by natural seeding on the Southwest coast of Korea
-
(in Korean with English abstract)
-
Hwang MS, Kim SM, Ha DS, Baek JM, Kim HS, Choi HG (2005) DNA sequences and identification of Porphyra cultivated by natural seeding on the Southwest coast of Korea. Algae 20: 183-196 (in Korean with English abstract).
-
(2005)
Algae
, vol.20
, pp. 183-196
-
-
Hwang, M.S.1
Kim, S.M.2
Ha, D.S.3
Baek, J.M.4
Kim, H.S.5
Choi, H.G.6
-
12
-
-
0036775403
-
Genetic information of three pure lines of Porphyra yezoensis (Bangiales, Rhodophyta) obtained by AFLP analysis
-
Iitsuka O, Nakamura K, Ozaki A, Okamoto N, Saga N (2002) Genetic information of three pure lines of Porphyra yezoensis (Bangiales, Rhodophyta) obtained by AFLP analysis. Fish Sci 68: 1113-1117.
-
(2002)
Fish Sci
, vol.68
, pp. 1113-1117
-
-
Iitsuka, O.1
Nakamura, K.2
Ozaki, A.3
Okamoto, N.4
Saga, N.5
-
13
-
-
0842323950
-
Analysis of mitochondrial D-loop region casts new light on domestic water buffalo (Bubalus bubalis) phylogeny
-
Keirstein G, Vallinoto M, Silva A, Schneider MP, Iannuzzi L, Brenig B (2004) Analysis of mitochondrial D-loop region casts new light on domestic water buffalo (Bubalus bubalis) phylogeny. Mol Phylogenet Evol 30: 308-324.
-
(2004)
Mol Phylogenet Evol
, vol.30
, pp. 308-324
-
-
Keirstein, G.1
Vallinoto, M.2
Silva, A.3
Schneider, M.P.4
Iannuzzi, L.5
Brenig, B.6
-
14
-
-
0032781909
-
Molecular divergence of the SSU rRNA gene and internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta)
-
Kunimoto M, Kito H, Kaminishi Y, Mizukami Y, Murase N (1999) Molecular divergence of the SSU rRNA gene and internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta). J Appl Phycol 11: 211-216.
-
(1999)
J Appl Phycol
, vol.11
, pp. 211-216
-
-
Kunimoto, M.1
Kito, H.2
Kaminishi, Y.3
Mizukami, Y.4
Murase, N.5
-
15
-
-
0042694786
-
Molecular features of a defined genetic marker for the determination of the Porphyra tenera lineage
-
Kunimoto M, Kito H, Mizukami Y, Murase N, Levine I (2003) Molecular features of a defined genetic marker for the determination of the Porphyra tenera lineage. J Appl Phycol 15: 337-343.
-
(2003)
J Appl Phycol
, vol.15
, pp. 337-343
-
-
Kunimoto, M.1
Kito, H.2
Mizukami, Y.3
Murase, N.4
Levine, I.5
-
16
-
-
0242722236
-
Taxonomic studies of Porphyra species cultivated in Japan, referring to their transition to the cultivated variety
-
Miura A (1988) Taxonomic studies of Porphyra species cultivated in Japan, referring to their transition to the cultivated variety. J Tokyo Univ Fish 75: 311-325.
-
(1988)
J Tokyo Univ Fish
, vol.75
, pp. 311-325
-
-
Miura, A.1
-
17
-
-
17644406991
-
-
edited by Japan Fisheries Resource Conservation Association. Japan Fisheries Resource Conservation Association, Tokyo, (in Japanese)
-
Miura A (1998) Asakusa-nori: data book of rare aquatic animals and plants of Japan, edited by Japan Fisheries Resource Conservation Association. Japan Fisheries Resource Conservation Association, Tokyo, pp 298-299 (in Japanese).
-
(1998)
Asakusa-nori: Data Book of Rare Aquatic Animals and Plants of Japan
, pp. 298-299
-
-
Miura, A.1
-
18
-
-
0242722238
-
Distribution of Porphyra in Japan as affected by cultivation
-
Miura A, Aruga Y (1987) Distribution of Porphyra in Japan as affected by cultivation. J Tokyo Univ Fish 74: 41-50.
-
(1987)
J Tokyo Univ Fish
, vol.74
, pp. 41-50
-
-
Miura, A.1
Aruga, Y.2
-
19
-
-
0242637910
-
Nucleotide sequence variation in the ribosomal internal transcribed spacer regions of cultivated (cultivars) and field-collected thalli of Porphyra yezoensis
-
Mizukami Y, Kito H, Kaminishi Y, Murase N, Kunimoto M (1999) Nucleotide sequence variation in the ribosomal internal transcribed spacer regions of cultivated (cultivars) and field-collected thalli of Porphyra yezoensis. Fish Sci 65: 788-789.
-
(1999)
Fish Sci
, vol.65
, pp. 788-789
-
-
Mizukami, Y.1
Kito, H.2
Kaminishi, Y.3
Murase, N.4
Kunimoto, M.5
-
20
-
-
57449083802
-
The distribution, morphology, and ecology of three introduced Asiatic species of Porphyra (Bangiales, Rhodophyta) in the Northwestern Atlantic
-
Neefus CD, Mathieson A, Bray TL, Yarish C (2008) The distribution, morphology, and ecology of three introduced Asiatic species of Porphyra (Bangiales, Rhodophyta) in the Northwestern Atlantic. J Phycol 44: 1399-1414.
-
(2008)
J Phycol
, vol.44
, pp. 1399-1414
-
-
Neefus, C.D.1
Mathieson, A.2
Bray, T.L.3
Yarish, C.4
-
21
-
-
0018147653
-
Estimation of average heterozygosity and genetic distance from a small number of individuals
-
Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590.
-
(1978)
Genetics
, vol.89
, pp. 583-590
-
-
Nei, M.1
-
22
-
-
0005814023
-
Mathematical model for studying genetic variation in terms of restriction endonucleases
-
Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76: 5269-5273.
-
(1979)
Proc Natl Acad Sci USA
, vol.76
, pp. 5269-5273
-
-
Nei, M.1
Li, W.H.2
-
23
-
-
0037269455
-
Rapid DNA extraction from conchocelis and ITS-1 rDNA sequences of seven strains of cultivated Porphyra yezoensis (Bangiales, Rhodophyta)
-
Niwa K, Aruga Y (2003) Rapid DNA extraction from conchocelis and ITS-1 rDNA sequences of seven strains of cultivated Porphyra yezoensis (Bangiales, Rhodophyta). J Appl Phycol 15: 29-33.
-
(2003)
J Appl Phycol
, vol.15
, pp. 29-33
-
-
Niwa, K.1
Aruga, Y.2
-
24
-
-
33645073957
-
Identification of currently cultivated Porphyra species by PCR-RFLP analysis
-
Niwa K, Aruga Y (2006) Identification of currently cultivated Porphyra species by PCR-RFLP analysis. Fish Sci 72: 143-148.
-
(2006)
Fish Sci
, vol.72
, pp. 143-148
-
-
Niwa, K.1
Aruga, Y.2
-
25
-
-
3042704751
-
Morphological and AFLP variation of Porphyra yezoensis Ueda form narawaensis Miura (Bangiales, Rhodophyta)
-
Niwa K, Kikuchi N, Iwabuchi M, Aruga Y (2004) Morphological and AFLP variation of Porphyra yezoensis Ueda form narawaensis Miura (Bangiales, Rhodophyta). Phycol Res 52: 180-190.
-
(2004)
Phycol Res
, vol.52
, pp. 180-190
-
-
Niwa, K.1
Kikuchi, N.2
Iwabuchi, M.3
Aruga, Y.4
-
26
-
-
43749109833
-
Comparative study of wild and cultivated Porphyra yezoensis (Bangiales, Rhodophyta) based on molecular and morphological data
-
Niwa K, Kato A, Kobiyama A, Kawai H, Aruga Y (2008) Comparative study of wild and cultivated Porphyra yezoensis (Bangiales, Rhodophyta) based on molecular and morphological data. J Appl Phycol 20: 261-270.
-
(2008)
J Appl Phycol
, vol.20
, pp. 261-270
-
-
Niwa, K.1
Kato, A.2
Kobiyama, A.3
Kawai, H.4
Aruga, Y.5
-
27
-
-
64349103572
-
Genetic diversity and introgression in two cultivated species (Porphyra yezoensis and Porphyra tenera) and closely related wild species of Porphyra (Bangiales, Rhodophyta)
-
Niwa K, Iida S, Kato A, Kawai H, Kikuchi N, Kobiyama A, Aruga Y (2009) Genetic diversity and introgression in two cultivated species (Porphyra yezoensis and Porphyra tenera) and closely related wild species of Porphyra (Bangiales, Rhodophyta). J Phycol 45: 493-502.
-
(2009)
J Phycol
, vol.45
, pp. 493-502
-
-
Niwa, K.1
Iida, S.2
Kato, A.3
Kawai, H.4
Kikuchi, N.5
Kobiyama, A.6
Aruga, Y.7
-
28
-
-
0031773680
-
Modeltest: Testing the model of DNA substitution
-
Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
29
-
-
0035139147
-
Intraspecific gene genealogies: Trees grafting into networks
-
Posada D, Crandall KA (2001) Intraspecific gene genealogies: trees grafting into networks. Trends Ecol Evol 16: 37-45.
-
(2001)
Trends Ecol Evol
, vol.16
, pp. 37-45
-
-
Posada, D.1
Crandall, K.A.2
-
30
-
-
0032972599
-
DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
-
Rozas J, Rozas R (1999) DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175.
-
(1999)
Bioinformatics
, vol.15
, pp. 174-175
-
-
Rozas, J.1
Rozas, R.2
-
32
-
-
0031574072
-
The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24: 4876-4882.
-
(1997)
Nucleic Acids Res
, vol.24
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
33
-
-
11144252288
-
Determing the affinities of salt march fucoids using microsatellite markers: Evidence of hybridization and introgression between two species of Fucus (Phaeophyta) in a Maine estuary
-
Wallace A, Klein AS, Mathieson AC (2004) Determing the affinities of salt march fucoids using microsatellite markers: evidence of hybridization and introgression between two species of Fucus (Phaeophyta) in a Maine estuary. J Phycol 40: 1013-1027.
-
(2004)
J Phycol
, vol.40
, pp. 1013-1027
-
-
Wallace, A.1
Klein, A.S.2
Mathieson, A.C.3
-
34
-
-
0016491430
-
On the number of segregating sites in genetical models without recombination
-
Watterson GA (1975) On the number of segregating sites in genetical models without recombination. Theor Pop Biol 7: 256-276.
-
(1975)
Theor Pop Biol
, vol.7
, pp. 256-276
-
-
Watterson, G.A.1
-
35
-
-
21544480302
-
Identification of 27 Porphyra lines (Rhodophyta) by DNA fingerprinting and molecular markers
-
Weng ML, Liu B, Jin DM, Yang QK, Zhao G, Ma JH, Xu P, Duan DL, Wang B (2005) Identification of 27 Porphyra lines (Rhodophyta) by DNA fingerprinting and molecular markers. J Appl Phycol 17: 91-97.
-
(2005)
J Appl Phycol
, vol.17
, pp. 91-97
-
-
Weng, M.L.1
Liu, B.2
Jin, D.M.3
Yang, Q.K.4
Zhao, G.5
Ma, J.H.6
Xu, P.7
Duan, D.L.8
Wang, B.9
-
36
-
-
23744494255
-
The internal transcribed spacer of nuclear ribosomal DNA in the gymnosperm Gnetum
-
Won H, Renner SS (2005) The internal transcribed spacer of nuclear ribosomal DNA in the gymnosperm Gnetum. Mol Phylogenet Evol 36: 581-597.
-
(2005)
Mol Phylogenet Evol
, vol.36
, pp. 581-597
-
-
Won, H.1
Renner, S.S.2
-
37
-
-
0003723498
-
-
(in Japanese), Tokyo: Uchida Rokakuho
-
Yoshida T (1998) Marine algae of Japan. Uchida Rokakuho, Tokyo, p 222 (in Japanese).
-
(1998)
Marine Algae of Japan
, pp. 222
-
-
Yoshida, T.1
|