-
1
-
-
67449095891
-
Computational biology for cardiovascular biomarker discovery
-
10.1093/bib/bbp008, 19276200
-
Azuaje F, Devaux Y, Wagner D. Computational biology for cardiovascular biomarker discovery. Brief Bioinform 2009, 10:367-77. 10.1093/bib/bbp008, 19276200.
-
(2009)
Brief Bioinform
, vol.10
, pp. 367-377
-
-
Azuaje, F.1
Devaux, Y.2
Wagner, D.3
-
2
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
10.1038/nature04209, 16189514
-
Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P, Sikorski RS, Vandenhaute J, Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE, Roth FP, Vidal M. Towards a proteome-scale map of the human protein-protein interaction network. Nature 2005, 437:1173-8. 10.1038/nature04209, 16189514.
-
(2005)
Nature
, vol.437
, pp. 1173-1178
-
-
Rual, J.F.1
Venkatesan, K.2
Hao, T.3
Hirozane-Kishikawa, T.4
Dricot, A.5
Li, N.6
Berriz, G.F.7
Gibbons, F.D.8
Dreze, M.9
Ayivi-Guedehoussou, N.10
Klitgord, N.11
Simon, C.12
Boxem, M.13
Milstein, S.14
Rosenberg, J.15
Goldberg, D.S.16
Zhang, L.V.17
Wong, S.L.18
Franklin, G.19
Li, S.20
Albala, J.S.21
Lim, J.22
Fraughton, C.23
Llamosas, E.24
Cevik, S.25
Bex, C.26
Lamesch, P.27
Sikorski, R.S.28
Vandenhaute, J.29
Zoghbi, H.Y.30
Smolyar, A.31
Bosak, S.32
Sequerra, R.33
Doucette-Stamm, L.34
Cusick, M.E.35
Hill, D.E.36
Roth, F.P.37
Vidal, M.38
more..
-
3
-
-
25144498379
-
A human protein-protein interaction network: a resource for annotating the proteome
-
10.1016/j.cell.2005.08.029, 16169070
-
Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, Goehler H, Stroedicke M, Zenkner M, Schoenherr A, Koeppen S, Timm J, Mintzlaff S, Abraham C, Bock N, Kietzmann S, Goedde A, Toksöz E, Droege A, Krobitsch S, Korn B, Birchmeier W, Lehrach H, Wanker EE. A human protein-protein interaction network: a resource for annotating the proteome. Cell 2005, 122:957-68. 10.1016/j.cell.2005.08.029, 16169070.
-
(2005)
Cell
, vol.122
, pp. 957-968
-
-
Stelzl, U.1
Worm, U.2
Lalowski, M.3
Haenig, C.4
Brembeck, F.H.5
Goehler, H.6
Stroedicke, M.7
Zenkner, M.8
Schoenherr, A.9
Koeppen, S.10
Timm, J.11
Mintzlaff, S.12
Abraham, C.13
Bock, N.14
Kietzmann, S.15
Goedde, A.16
Toksöz, E.17
Droege, A.18
Krobitsch, S.19
Korn, B.20
Birchmeier, W.21
Lehrach, H.22
Wanker, E.E.23
more..
-
4
-
-
0142059836
-
Protein complexes and functional modules in molecular networks
-
Spirin V, Mirny LA. Protein complexes and functional modules in molecular networks. Proc Natl Acad Sci USA 2003, 21:12123-12128.
-
(2003)
Proc Natl Acad Sci USA
, vol.21
, pp. 12123-12128
-
-
Spirin, V.1
Mirny, L.A.2
-
5
-
-
33744822763
-
Yeast Protein Interactome topology provides framework for coordinated-functionality
-
10.1093/nar/gkl325, 1464412, 16717286
-
Valente AX, Cusick ME. Yeast Protein Interactome topology provides framework for coordinated-functionality. Nucleic Acids Res 2006, 34:2812-9. 10.1093/nar/gkl325, 1464412, 16717286.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 2812-2819
-
-
Valente, A.X.1
Cusick, M.E.2
-
6
-
-
41649119247
-
Protein networks in disease
-
10.1101/gr.071852.107, 18381899
-
Ideker T, Sharan R. Protein networks in disease. Genome Res 2008, 18:644-52. 10.1101/gr.071852.107, 18381899.
-
(2008)
Genome Res
, vol.18
, pp. 644-652
-
-
Ideker, T.1
Sharan, R.2
-
7
-
-
34247217200
-
Hubs in biological interaction networks exhibit low changes in expression in experimental asthma
-
10.1038/msb4100138, 1865580, 17437023
-
Lu X, Jain VV, Finn PW, Perkins DL. Hubs in biological interaction networks exhibit low changes in expression in experimental asthma. Mol Syst Biol 2007, 3:98. 10.1038/msb4100138, 1865580, 17437023.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 98
-
-
Lu, X.1
Jain, V.V.2
Finn, P.W.3
Perkins, D.L.4
-
8
-
-
44449144053
-
Linking Gene Expression and Functional Network Data in Human Heart Failure
-
10.1371/journal.pone.0001347, 2147076, 18094754
-
Camargo A, Azuaje F. Linking Gene Expression and Functional Network Data in Human Heart Failure. PLoS ONE 2007, 2:e1347. 10.1371/journal.pone.0001347, 2147076, 18094754.
-
(2007)
PLoS ONE
, vol.2
-
-
Camargo, A.1
Azuaje, F.2
-
9
-
-
78449276060
-
Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions
-
IEEE Computer Society Press
-
Azuaje F, Wang H, Zheng H, Bodenreider O, Chesneau A. Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions. Proceedings of IEEE International Conference on Data Mining (ICDM): 18-22 December 2006; Hong Kong 2006, 114-119. IEEE Computer Society Press.
-
(2006)
Proceedings of IEEE International Conference on Data Mining (ICDM): 18-22 December 2006; Hong Kong
, pp. 114-119
-
-
Azuaje, F.1
Wang, H.2
Zheng, H.3
Bodenreider, O.4
Chesneau, A.5
-
10
-
-
34347329333
-
In search of the biological significance of modular structures in protein networks
-
10.1371/journal.pcbi.0030107, 1885274,1885274, 17542644
-
Wang Z, Zhang J. In search of the biological significance of modular structures in protein networks. PLoS Comput Biol 2007, 3:e107. 10.1371/journal.pcbi.0030107, 1885274,1885274, 17542644.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Wang, Z.1
Zhang, J.2
-
11
-
-
34247622363
-
The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics
-
10.1371/journal.pcbi.0030059, 1853125,1853125, 17447836
-
Yu H, Kim PM, Sprecher E, Trifonov V, Gerstein M. The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics. PLoS Comput Biol 2007, 3:e59. 10.1371/journal.pcbi.0030059, 1853125,1853125, 17447836.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Yu, H.1
Kim, P.M.2
Sprecher, E.3
Trifonov, V.4
Gerstein, M.5
-
12
-
-
67749127835
-
Layered functional network analysis of gene expression in human heart failure
-
10.1371/journal.pone.0006288, 2712681, 19629191
-
Zhu W, Yang L, Du Z. Layered functional network analysis of gene expression in human heart failure. PLoS ONE 2009, 4:e6288. 10.1371/journal.pone.0006288, 2712681, 19629191.
-
(2009)
PLoS ONE
, vol.4
-
-
Zhu, W.1
Yang, L.2
Du, Z.3
-
13
-
-
34447521460
-
Human disease classification in the postgenomic era: a complex systems approach to human pathobiology
-
10.1038/msb4100163, 1948102, 17625512
-
Loscalzo J, Kohane I, Barabasi AL. Human disease classification in the postgenomic era: a complex systems approach to human pathobiology. Mol Syst Biol 2007, 3:124. 10.1038/msb4100163, 1948102, 17625512.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 124
-
-
Loscalzo, J.1
Kohane, I.2
Barabasi, A.L.3
-
14
-
-
77953397764
-
Systems medicine: the future of medical genomics and healthcare
-
10.1186/gm2, 2651587, 19348689
-
Auffray C, Chen Z, Hood L. Systems medicine: the future of medical genomics and healthcare. Genome Med 2009, 1:2. 10.1186/gm2, 2651587, 19348689.
-
(2009)
Genome Med
, vol.1
, pp. 2
-
-
Auffray, C.1
Chen, Z.2
Hood, L.3
-
15
-
-
84865730611
-
A set of measures of centrality based upon betweenness
-
Freeman L. A set of measures of centrality based upon betweenness. Sociometry 1977, 40:35-41.
-
(1977)
Sociometry
, vol.40
, pp. 35-41
-
-
Freeman, L.1
-
16
-
-
69949092735
-
Polar Mapper: a computational tool for integrated visualization of protein interaction networks and mRNA expression data
-
2684442,2684442, 19091689
-
Gonçalves JP, Grãos M, Valente AX. Polar Mapper: a computational tool for integrated visualization of protein interaction networks and mRNA expression data. J R Soc Interface 2008, 6:881-896. 2684442,2684442, 19091689.
-
(2008)
J R Soc Interface
, vol.6
, pp. 881-896
-
-
Gonçalves, J.P.1
Grãos, M.2
Valente, A.X.3
-
17
-
-
39749142228
-
The search for new cardiovascular biomarkers
-
10.1038/nature06802, 18288185
-
Gerszten RE, Wang TJ. The search for new cardiovascular biomarkers. Nature 2008, 451:949-52. 10.1038/nature06802, 18288185.
-
(2008)
Nature
, vol.451
, pp. 949-952
-
-
Gerszten, R.E.1
Wang, T.J.2
-
18
-
-
43549099569
-
Biomarkers in heart failure
-
10.1056/NEJMra0800239, 18480207
-
Braunwald E. Biomarkers in heart failure. N Engl J Med 2008, 358:2148-59. 10.1056/NEJMra0800239, 18480207.
-
(2008)
N Engl J Med
, vol.358
, pp. 2148-2159
-
-
Braunwald, E.1
-
19
-
-
33646568805
-
Gene prioritization through genomic data fusion
-
10.1038/nbt1203, 16680138
-
Aerts S, Lambrechts D, Maity S, Van Loo P, Coessens B, De Smet F, Tranchevent LC, De Moor B, Marynen P, Hassan B, Carmeliet P, Moreau Y. Gene prioritization through genomic data fusion. Nat Biotechnol 2006, 24:537-44. 10.1038/nbt1203, 16680138.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 537-544
-
-
Aerts, S.1
Lambrechts, D.2
Maity, S.3
Van Loo, P.4
Coessens, B.5
De Smet, F.6
Tranchevent, L.C.7
De Moor, B.8
Marynen, P.9
Hassan, B.10
Carmeliet, P.11
Moreau, Y.12
-
20
-
-
10744224197
-
Development of human protein reference database as an initial platform for approaching systems biology in humans
-
10.1101/gr.1680803, 403728, 14525934
-
Peri S, Navarro JD, Amanchy R, Kristiansen TZ, Jonnalagadda CK, Surendranath V, Niranjan V, Muthusamy B, Gandhi TK, Gronborg M, Ibarrola N, Deshpande N, Shanker K, Shivashankar HN, Rashmi BP, Ramya MA, Zhao Z, Chandrika KN, Padma N, Harsha HC, Yatish AJ, Kavitha MP, Menezes M, Choudhury DR, Suresh S, Ghosh N, Saravana R, Chandran S, Krishna S, Joy M, Anand SK, Madavan V, Joseph A, Wong GW, Schiemann WP, Constantinescu SN, Huang L, Khosravi-Far R, Steen H, Tewari M, Ghaffari S, Blobe GC, Dang CV, Garcia JG, Pevsner J, Jensen ON, Roepstorff P, Deshpande KS, Chinnaiyan AM, Hamosh A, Chakravarti A, Pandey A. Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Res 2003, 13:2363-71. 10.1101/gr.1680803, 403728, 14525934.
-
(2003)
Genome Res
, vol.13
, pp. 2363-2371
-
-
Peri, S.1
Navarro, J.D.2
Amanchy, R.3
Kristiansen, T.Z.4
Jonnalagadda, C.K.5
Surendranath, V.6
Niranjan, V.7
Muthusamy, B.8
Gandhi, T.K.9
Gronborg, M.10
Ibarrola, N.11
Deshpande, N.12
Shanker, K.13
Shivashankar, H.N.14
Rashmi, B.P.15
Ramya, M.A.16
Zhao, Z.17
Chandrika, K.N.18
Padma, N.19
Harsha, H.C.20
Yatish, A.J.21
Kavitha, M.P.22
Menezes, M.23
Choudhury, D.R.24
Suresh, S.25
Ghosh, N.26
Saravana, R.27
Chandran, S.28
Krishna, S.29
Joy, M.30
Anand, S.K.31
Madavan, V.32
Joseph, A.33
Wong, G.W.34
Schiemann, W.P.35
Constantinescu, S.N.36
Huang, L.37
Khosravi-Far, R.38
Steen, H.39
Tewari, M.40
Ghaffari, S.41
Blobe, G.C.42
Dang, C.V.43
Garcia, J.G.44
Pevsner, J.45
Jensen, O.N.46
Roepstorff, P.47
Deshpande, K.S.48
Chinnaiyan, A.M.49
Hamosh, A.50
Chakravarti, A.51
Pandey, A.52
more..
-
21
-
-
33644873184
-
BioGRID: a general repository for interaction datasets
-
10.1093/nar/gkj109, 1347471, 16381927, Database
-
Stark C, Breitkreutz BJ, Reguly T, Boucher L, Breitkreutz A, Tyers M. BioGRID: a general repository for interaction datasets. Nucleic Acids Res 2006, (34 Database):D535-9. 10.1093/nar/gkj109, 1347471, 16381927.
-
(2006)
Nucleic Acids Res
, Issue.34
-
-
Stark, C.1
Breitkreutz, B.J.2
Reguly, T.3
Boucher, L.4
Breitkreutz, A.5
Tyers, M.6
-
22
-
-
0037138406
-
MINT: a Molecular INTeraction database
-
10.1016/S0014-5793(01)03293-8, 11911893
-
Zanzoni A, Montecchi-Palazzi L, Quondam M, Ausiello G, Helmer-Citterich M, Cesareni G. MINT: a Molecular INTeraction database. FEBS Lett 2002, 513:135-40. 10.1016/S0014-5793(01)03293-8, 11911893.
-
(2002)
FEBS Lett
, vol.513
, pp. 135-140
-
-
Zanzoni, A.1
Montecchi-Palazzi, L.2
Quondam, M.3
Ausiello, G.4
Helmer-Citterich, M.5
Cesareni, G.6
-
23
-
-
41349117788
-
Finding community structure in very large networks
-
Clauset A, Newman MEJ, Moore C. Finding community structure in very large networks. Phys Rev E 2004, 70:066111.
-
(2004)
Phys Rev E
, vol.70
, pp. 066111
-
-
Clauset, A.1
Newman, M.E.J.2
Moore, C.3
-
24
-
-
0346156102
-
Detection of functional modules from protein interaction networks
-
10.1002/prot.10505, 14705023
-
Pereira-Leal JB, Enright JA, Ouzounis CA. Detection of functional modules from protein interaction networks. Proteins 2004, 54:49-57. 10.1002/prot.10505, 14705023.
-
(2004)
Proteins
, vol.54
, pp. 49-57
-
-
Pereira-Leal, J.B.1
Enright, J.A.2
Ouzounis, C.A.3
-
25
-
-
33746847084
-
An open-access long oligonucleotide microarray resource for analysis of the human and mouse transcriptomes
-
10.1093/nar/gkl485, 1524919, 16855282
-
Le Brigand K, Russell R, Moreilhon C, Rouillard JM, Jost B, Amiot F, Magnone V, Bole-Feysot C, Rostagno P, Virolle V, Defamie V, Dessen P, Williams G, Lyons P, Rios G, Mari B, Gulari E, Kastner P, Gidrol X, Freeman TC, Barbry P. An open-access long oligonucleotide microarray resource for analysis of the human and mouse transcriptomes. Nucleic Acids Res 2006, 34:e87. 10.1093/nar/gkl485, 1524919, 16855282.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Le Brigand, K.1
Russell, R.2
Moreilhon, C.3
Rouillard, J.M.4
Jost, B.5
Amiot, F.6
Magnone, V.7
Bole-Feysot, C.8
Rostagno, P.9
Virolle, V.10
Defamie, V.11
Dessen, P.12
Williams, G.13
Lyons, P.14
Rios, G.15
Mari, B.16
Gulari, E.17
Kastner, P.18
Gidrol, X.19
Freeman, T.C.20
Barbry, P.21
more..
-
26
-
-
48449097800
-
ENDEAVOUR update: a web resource for gene prioritization in multiple species
-
10.1093/nar/gkn325, 2447805, 18508807, Web Server
-
Tranchevent LC, Barriot R, Yu S, Van Vooren S, Van Loo P, Coessens B, De Moor B, Aerts S, Moreau Y. ENDEAVOUR update: a web resource for gene prioritization in multiple species. Nucleic Acids Res 2008, (36 Web Server):W377-84. 10.1093/nar/gkn325, 2447805, 18508807.
-
(2008)
Nucleic Acids Res
, Issue.36
-
-
Tranchevent, L.C.1
Barriot, R.2
Yu, S.3
Van Vooren, S.4
Van Loo, P.5
Coessens, B.6
De Moor, B.7
Aerts, S.8
Moreau, Y.9
-
27
-
-
38449101120
-
Integration of biological networks and gene expression data using Cytoscape
-
10.1038/nprot.2007.324, 17947979
-
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD. Integration of biological networks and gene expression data using Cytoscape. Nat Protoc 2007, 2:2366-2382. 10.1038/nprot.2007.324, 17947979.
-
(2007)
Nat Protoc
, vol.2
, pp. 2366-2382
-
-
Cline, M.S.1
Smoot, M.2
Cerami, E.3
Kuchinsky, A.4
Landys, N.5
Workman, C.6
Christmas, R.7
Avila-Campilo, I.8
Creech, M.9
Gross, B.10
Hanspers, K.11
Isserlin, R.12
Kelley, R.13
Killcoyne, S.14
Lotia, S.15
Maere, S.16
Morris, J.17
Ono, K.18
Pavlovic, V.19
Pico, A.R.20
Vailaya, A.21
Wang, P.L.22
Adler, A.23
Conklin, B.R.24
Hood, L.25
Kuiper, M.26
Sander, C.27
Schmulevich, I.28
Schwikowski, B.29
Warner, G.J.30
Ideker, T.31
Bader, G.D.32
more..
-
28
-
-
33747859675
-
BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments
-
10.1093/nar/gkl172, 1538844, 16845052
-
Al-Shahrour F, Minguez P, Tarraga J, Montaner D, Alloza E, Vaquerizas JM, Conde L, Blaschke C, Vera J, Dopazo J. BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. Nucleic Acids Res 2006, 34:W472-476. 10.1093/nar/gkl172, 1538844, 16845052.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Al-Shahrour, F.1
Minguez, P.2
Tarraga, J.3
Montaner, D.4
Alloza, E.5
Vaquerizas, J.M.6
Conde, L.7
Blaschke, C.8
Vera, J.9
Dopazo, J.10
-
29
-
-
77954083928
-
GenNav v1.11
-
GenNav v1.11. , http://mor.nlm.nih.gov/perl/gennav.pl
-
-
-
-
30
-
-
0033976586
-
TRANSFAC: an integrated system for gene expression regulation
-
10.1093/nar/28.1.316, 102445, 10592259
-
Wingender E, Chen X, Hehl R, Karas H, Liebich I, Matys V, Meinhardt T, Prüß M, Reuter I, Schacherer F. TRANSFAC: an integrated system for gene expression regulation. Nucleic Acids Res 2000, 28:316-319. 10.1093/nar/28.1.316, 102445, 10592259.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 316-319
-
-
Wingender, E.1
Chen, X.2
Hehl, R.3
Karas, H.4
Liebich, I.5
Matys, V.6
Meinhardt, T.7
Prüß, M.8
Reuter, I.9
Schacherer, F.10
-
31
-
-
33644750115
-
MiRBase: microRNA sequences, targets and gene nomenclature
-
Database
-
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. miRBase: microRNA sequences, targets and gene nomenclature. Nucleics Acid Research 2006, (34 Database):D140-D144.
-
(2006)
Nucleics Acid Research
, Issue.34
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
van Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
32
-
-
72449193988
-
Statistica, version 8.0
-
Statistica, version 8.0. , http://www.statsoft.com
-
-
-
-
33
-
-
33747866687
-
Next station in microarray data analysis: GEPAS
-
10.1093/nar/gkl197, 1538867, 16845056, Web Server
-
Montaner D, Tárraga J, Huerta-Cepas J, Burguet J, Vaquerizas JM, Conde L, Minguez P, Vera J, Mukherjee S, Valls J, Pujana MA, Alloza E, Herrero J, Al-Shahrour F, Dopazo J. Next station in microarray data analysis: GEPAS. Nucleic Acids Res 2006, (34 Web Server):W486-91. 10.1093/nar/gkl197, 1538867, 16845056.
-
(2006)
Nucleic Acids Res
, Issue.34
-
-
Montaner, D.1
Tárraga, J.2
Huerta-Cepas, J.3
Burguet, J.4
Vaquerizas, J.M.5
Conde, L.6
Minguez, P.7
Vera, J.8
Mukherjee, S.9
Valls, J.10
Pujana, M.A.11
Alloza, E.12
Herrero, J.13
Al-Shahrour, F.14
Dopazo, J.15
-
34
-
-
7244250182
-
Data mining in bioinformatics using Weka
-
10.1093/bioinformatics/bth261, 15073010
-
Frank E, Hall M, Trigg L, Holmes G, Witten IH. Data mining in bioinformatics using Weka. Bioinformatics 2004, 20:2479-81. 10.1093/bioinformatics/bth261, 15073010.
-
(2004)
Bioinformatics
, vol.20
, pp. 2479-2481
-
-
Frank, E.1
Hall, M.2
Trigg, L.3
Holmes, G.4
Witten, I.H.5
-
35
-
-
85047699837
-
E2Fs up-regulate expression of genes involved in DNA replication, DNA repair and mitosis
-
10.1038/sj.onc.1205102, 11821956
-
Polager S, Kalma Y, Berkovich E, Ginsberg D. E2Fs up-regulate expression of genes involved in DNA replication, DNA repair and mitosis. Oncogene 2002, 21:437-46. 10.1038/sj.onc.1205102, 11821956.
-
(2002)
Oncogene
, vol.21
, pp. 437-446
-
-
Polager, S.1
Kalma, Y.2
Berkovich, E.3
Ginsberg, D.4
-
36
-
-
84871717384
-
Entrez Gene
-
Entrez Gene. , http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene
-
-
-
-
37
-
-
66249092826
-
Information flow analysis of interactome networks
-
10.1371/journal.pcbi.1000350, 2685719, 19503817
-
Missiuro PV, Liu K, Zou L, Ross BC, Zhao G, Liu JS, Ge H. Information flow analysis of interactome networks. PLoS Comput Biol 2009, 5:e1000350. 10.1371/journal.pcbi.1000350, 2685719, 19503817.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Missiuro, P.V.1
Liu, K.2
Zou, L.3
Ross, B.C.4
Zhao, G.5
Liu, J.S.6
Ge, H.7
-
38
-
-
0033711108
-
The extracellular matrix and the cytoskeleton in heart hypertrophy and failure
-
10.1023/A:1009857403356, 16228907
-
Jane-Lise S, Corda S, Chassagne C, Rappaport L. The extracellular matrix and the cytoskeleton in heart hypertrophy and failure. Heart Fail Rev 2000, 5:239-50. 10.1023/A:1009857403356, 16228907.
-
(2000)
Heart Fail Rev
, vol.5
, pp. 239-250
-
-
Jane-Lise, S.1
Corda, S.2
Chassagne, C.3
Rappaport, L.4
-
39
-
-
34047232485
-
Beta1 integrins modulate beta-adrenergic receptor-stimulated cardiac myocyte apoptosis and myocardial remodeling
-
10.1161/01.HYP.0000258703.36986.13, 17283249
-
Krishnamurthy P, Subramanian V, Singh M, Singh K. Beta1 integrins modulate beta-adrenergic receptor-stimulated cardiac myocyte apoptosis and myocardial remodeling. Hypertension 2007, 49:865-72. 10.1161/01.HYP.0000258703.36986.13, 17283249.
-
(2007)
Hypertension
, vol.49
, pp. 865-872
-
-
Krishnamurthy, P.1
Subramanian, V.2
Singh, M.3
Singh, K.4
-
40
-
-
0037440673
-
Differential binding of transcription factor E2F-2 to the endothelin-converting enzyme-1b promoter affects blood pressure regulation
-
10.1093/hmg/ddg040, 12566389
-
Funke-Kaiser H, Reichenberger F, Köpke K, Herrmann SM, Pfeifer J, Orzechowski HD, Zidek W, Paul M, Brand E. Differential binding of transcription factor E2F-2 to the endothelin-converting enzyme-1b promoter affects blood pressure regulation. Hum Mol Genet 2003, 12:423-33. 10.1093/hmg/ddg040, 12566389.
-
(2003)
Hum Mol Genet
, vol.12
, pp. 423-433
-
-
Funke-Kaiser, H.1
Reichenberger, F.2
Köpke, K.3
Herrmann, S.M.4
Pfeifer, J.5
Orzechowski, H.D.6
Zidek, W.7
Paul, M.8
Brand, E.9
-
41
-
-
0038015105
-
Inhibition of E2F abrogates the development of cardiac myocyte hypertrophy
-
10.1074/jbc.M212612200, 12682052
-
Vara D, Bicknell KA, Coxon CH, Brooks G. Inhibition of E2F abrogates the development of cardiac myocyte hypertrophy. J Biol Chem 2003, 278:21388-94. 10.1074/jbc.M212612200, 12682052.
-
(2003)
J Biol Chem
, vol.278
, pp. 21388-21394
-
-
Vara, D.1
Bicknell, K.A.2
Coxon, C.H.3
Brooks, G.4
-
42
-
-
35748974863
-
Myocardial matrix remodeling and the matrix metalloproteinases: influence on cardiac form and function
-
10.1152/physrev.00012.2007, 17928585
-
Spinale FG. Myocardial matrix remodeling and the matrix metalloproteinases: influence on cardiac form and function. Physiol Rev 2007, 87:1285-342. 10.1152/physrev.00012.2007, 17928585.
-
(2007)
Physiol Rev
, vol.87
, pp. 1285-1342
-
-
Spinale, F.G.1
-
43
-
-
0036940681
-
Plasma matrix metalloproteinase and inhibitor profiles in patients with heart failure
-
200
-
Wilson EM, Gunasinghe HR, Coker ML, Sprunger P, Lee-Jackson D, Bozkurt B, Deswal A, Mann DL, Spinale FG. Plasma matrix metalloproteinase and inhibitor profiles in patients with heart failure. J Card Fail 28:390-8. 200.
-
J Card Fail
, vol.28
, pp. 390-398
-
-
Wilson, E.M.1
Gunasinghe, H.R.2
Coker, M.L.3
Sprunger, P.4
Lee-Jackson, D.5
Bozkurt, B.6
Deswal, A.7
Mann, D.L.8
Spinale, F.G.9
-
44
-
-
2942750045
-
Relations of plasma matrix metalloproteinase-9 to clinical cardiovascular risk factors and echocardiographic left ventricular measures: the Framingham Heart Study
-
10.1161/01.CIR.0000129318.79570.84, 15173025
-
Sundström J, Evans JC, Benjamin EJ, Levy D, Larson MG, Sawyer DB, Siwik DA, Colucci WS, Sutherland P, Wilson PW, Vasan RS. Relations of plasma matrix metalloproteinase-9 to clinical cardiovascular risk factors and echocardiographic left ventricular measures: the Framingham Heart Study. Circulation 2004, 109:2850-6. 10.1161/01.CIR.0000129318.79570.84, 15173025.
-
(2004)
Circulation
, vol.109
, pp. 2850-2856
-
-
Sundström, J.1
Evans, J.C.2
Benjamin, E.J.3
Levy, D.4
Larson, M.G.5
Sawyer, D.B.6
Siwik, D.A.7
Colucci, W.S.8
Sutherland, P.9
Wilson, P.W.10
Vasan, R.S.11
-
45
-
-
33748283150
-
Plasma matrix metalloproteinase-9 level is correlated with left ventricular volumes and ejection fraction in patients with heart failure
-
10.1016/j.cardfail.2006.05.012, 16952784
-
Yan AT, Yan RT, Spinale FG, Afzal R, Gunasinghe HR, Arnold M, Demers C, McKelvie RS, Liu PP. Plasma matrix metalloproteinase-9 level is correlated with left ventricular volumes and ejection fraction in patients with heart failure. J Card Fail 2006, 12:514-9. 10.1016/j.cardfail.2006.05.012, 16952784.
-
(2006)
J Card Fail
, vol.12
, pp. 514-519
-
-
Yan, A.T.1
Yan, R.T.2
Spinale, F.G.3
Afzal, R.4
Gunasinghe, H.R.5
Arnold, M.6
Demers, C.7
McKelvie, R.S.8
Liu, P.P.9
-
46
-
-
33144483802
-
Matrix metalloproteinase-9 is a marker of heart failure after acute myocardial infarction
-
10.1016/j.cardfail.2005.08.002, 16500583
-
Wagner DR, Delagardelle C, Ernens I, Rouy D, Vaillant M, Beissel J. Matrix metalloproteinase-9 is a marker of heart failure after acute myocardial infarction. J Card Fail 2006, 12:66-72. 10.1016/j.cardfail.2005.08.002, 16500583.
-
(2006)
J Card Fail
, vol.12
, pp. 66-72
-
-
Wagner, D.R.1
Delagardelle, C.2
Ernens, I.3
Rouy, D.4
Vaillant, M.5
Beissel, J.6
-
47
-
-
33947316374
-
Plasma matrix metalloproteinase-9 and left ventricular remodelling after acute myocardial infarction in man: a prospective cohort study
-
10.1093/eurheartj/ehm003, 2202923, 17339265
-
Kelly D, Cockerill G, Ng LL, Thompson M, Khan S, Samani NJ, Squire IB. Plasma matrix metalloproteinase-9 and left ventricular remodelling after acute myocardial infarction in man: a prospective cohort study. Eur Heart J 2007, 28:711-8. 10.1093/eurheartj/ehm003, 2202923, 17339265.
-
(2007)
Eur Heart J
, vol.28
, pp. 711-718
-
-
Kelly, D.1
Cockerill, G.2
Ng, L.L.3
Thompson, M.4
Khan, S.5
Samani, N.J.6
Squire, I.B.7
-
48
-
-
11144358111
-
Prognostically useful gene-expression profiles in acute myeloid leukemia
-
10.1056/NEJMoa040465, 15084694
-
Valk PJ, Verhaak RG, Beijen MA, Erpelinck CA, van Waalwijk B, van Doorn-Khosrovani S, Boer JM, Beverloo HB, Moorhouse MJ, Spek PJ, Löwenberg B, Delwel R. Prognostically useful gene-expression profiles in acute myeloid leukemia. N Engl J Med 2004, 350:1617-28. 10.1056/NEJMoa040465, 15084694.
-
(2004)
N Engl J Med
, vol.350
, pp. 1617-1628
-
-
Valk, P.J.1
Verhaak, R.G.2
Beijen, M.A.3
Erpelinck, C.A.4
van Waalwijk, B.5
van Doorn-Khosrovani, S.6
Boer, J.M.7
Beverloo, H.B.8
Moorhouse, M.J.9
Spek, P.J.10
Löwenberg, B.11
Delwel, R.12
-
49
-
-
16544369516
-
Use of gene-expression profiling to identify prognostic subclasses in adult acute myeloid leukemia
-
10.1056/NEJMoa031046, 15084693
-
Bullinger L, Döhner K, Bair E, Fröhling S, Schlenk RF, Tibshirani R, Döhner H, Pollack JR. Use of gene-expression profiling to identify prognostic subclasses in adult acute myeloid leukemia. N Engl J Med 2004, 350:1605-16. 10.1056/NEJMoa031046, 15084693.
-
(2004)
N Engl J Med
, vol.350
, pp. 1605-1616
-
-
Bullinger, L.1
Döhner, K.2
Bair, E.3
Fröhling, S.4
Schlenk, R.F.5
Tibshirani, R.6
Döhner, H.7
Pollack, J.R.8
-
50
-
-
49149084567
-
Transcriptomic biomarkers for individual risk assessment in new-onset heart failure
-
10.1161/CIRCULATIONAHA.107.756544, 18591436
-
Heidecker B, Kasper EK, Wittstein IS, Champion HC, Breton E, Russell SD, Kittleson MM, Baughman KL, Hare JM. Transcriptomic biomarkers for individual risk assessment in new-onset heart failure. Circulation 2008, 118:238-46. 10.1161/CIRCULATIONAHA.107.756544, 18591436.
-
(2008)
Circulation
, vol.118
, pp. 238-246
-
-
Heidecker, B.1
Kasper, E.K.2
Wittstein, I.S.3
Champion, H.C.4
Breton, E.5
Russell, S.D.6
Kittleson, M.M.7
Baughman, K.L.8
Hare, J.M.9
-
51
-
-
15944386344
-
GO molecular function terms are predictive of subcellular localization
-
full_text, 2652875, 15759622
-
Lu Z, Hunter L. GO molecular function terms are predictive of subcellular localization. Pac Symp Biocomput 2005, 151-61. full_text, 2652875, 15759622.
-
(2005)
Pac Symp Biocomput
, pp. 151-161
-
-
Lu, Z.1
Hunter, L.2
-
52
-
-
33947252154
-
Network-based prediction of protein function
-
10.1038/msb4100129, 1847944, 17353930
-
Sharan R, Ulitsky I, Shamir R. Network-based prediction of protein function. Mol Syst Biol 2007, 3:88. 10.1038/msb4100129, 1847944, 17353930.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 88
-
-
Sharan, R.1
Ulitsky, I.2
Shamir, R.3
-
53
-
-
44449119819
-
A protein interaction network associated with asthma
-
Hwang S, Son SW, Kim SC, Kim YJ, Jeong H, Lee DJ. A protein interaction network associated with asthma. Theor Biol 2008, 252:722-31.
-
(2008)
Theor Biol
, vol.252
, pp. 722-731
-
-
Hwang, S.1
Son, S.W.2
Kim, S.C.3
Kim, Y.J.4
Jeong, H.5
Lee, D.J.6
-
54
-
-
59849125136
-
Dynamic modularity in protein interaction networks predicts breast cancer outcome
-
10.1038/nbt.1522, 19182785
-
Taylor IW, Linding R, Warde-Farley D, Liu Y, Pesquita C, Faria D, Bull S, Pawson T, Morris Q, Wrana JL. Dynamic modularity in protein interaction networks predicts breast cancer outcome. Nat Biotechnol 2009, 27:199-204. 10.1038/nbt.1522, 19182785.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 199-204
-
-
Taylor, I.W.1
Linding, R.2
Warde-Farley, D.3
Liu, Y.4
Pesquita, C.5
Faria, D.6
Bull, S.7
Pawson, T.8
Morris, Q.9
Wrana, J.L.10
-
55
-
-
35348891430
-
Network-based classification of breast cancer metastasis
-
10.1038/msb4100180, 2063581, 17940530
-
Chuang HY, Lee E, Liu YT, Lee D, Ideker T. Network-based classification of breast cancer metastasis. Mol Syst Biol 2007, 3:140. 10.1038/msb4100180, 2063581, 17940530.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 140
-
-
Chuang, H.Y.1
Lee, E.2
Liu, Y.T.3
Lee, D.4
Ideker, T.5
-
56
-
-
77950540760
-
Integrative pathway-centric modeling of ventricular dysfunction after myocardial infarction
-
10.1371/journal.pone.0009661, 2836383, 20300185
-
Azuaje F, Devaux Y, Wagner D. Integrative pathway-centric modeling of ventricular dysfunction after myocardial infarction. PLoS ONE 2010, 5:e9661. 10.1371/journal.pone.0009661, 2836383, 20300185.
-
(2010)
PLoS ONE
, vol.5
-
-
Azuaje, F.1
Devaux, Y.2
Wagner, D.3
|