Loss of genetic integrity correlates with stocking intensity in brook charr (Salvelinus fontinalis)

Molecular Ecology

Volumn 19, Issue 10, 2010, Pages 2025-2037

  Marie, A D ^a   Bernatchez, L ^b   Garant, D ^a  

^a UNIVERSITÉ DE SHERBROOKE   (Canada)

^b UNIVERSITÉ LAVAL   (Canada)

Author keywords

Brook charr; Genetic diversity; Microsatellites; Population structure; Salmonids; Stocking

Indexed keywords

FRESH WATER; MICROSATELLITE DNA;

ALLELE; ANIMAL; ARTICLE; CANADA; DNA SEQUENCE; ENVIRONMENTAL PROTECTION; GENETIC VARIABILITY; GENETICS; POPULATION GENETICS; STATISTICAL MODEL; TROUT;

ALLELES; ANIMALS; CONSERVATION OF NATURAL RESOURCES; FRESH WATER; GENETIC VARIATION; GENETICS, POPULATION; LINEAR MODELS; MICROSATELLITE REPEATS; QUEBEC; SEQUENCE ANALYSIS, DNA; TROUT;

SALMONIDAE; SALVELINUS FONTINALIS;

EID: 77951985843     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2010.04628.x     Document Type: Article

References (51)

1. Aljanabi SM, Martinez I (1997) Universal and rapid salt-extraction of high quality genomic DNA for PCR- based techniques. Nucleic Acids Research, 25, 4692 4693.
2. Angers B, Bernatchez L (1998) Combined use of SMM and non-SMM methods to infer fine structure and evolutionary history of closely related brook charr (Salvelinus fontinalis, Salmonidae) populations from microsatellites. Molecular Biology and Evolution, 15, 143 159.
3. Aprahamian MW, Martin Smith K, McGinnity P, McKelvey S, Taylor J (2003) Restocking of salmonids - opportunities and limitations. Fisheries Research, 62, 211 227.
4. Araguas RM, Sanz N, Pla C, Garcia-Marin JL (2004) Breakdown of the brown trout evolutionary history due to hybridization between native and cultivated fish. Journal of Fish Biology, 65 (Suppl. A 28 37.
5. Araki H, Cooper B, Ardren WR et al. (2007) Genetic effects of captive breeding cause a rapid, cumulative fitness decline in the wild. Science, 318, 100 103.
6. Araki H, Berejikian BA, Ford MJ, Blouin MS (2008) Fitness of hatchery-reared salmonids in the wild. Evolutionary Applications, 1, 342 355.
7. Blanchet S, Páez DJ, Bernatchez L, Dodson JJ (2008) An integrated comparison of captive-bred and wild Atlantic salmon (Salmo salar): implications for supportive breeding programs. Biological Conservation, 141, 1989 1999.
8. Crispo E, Bentzen P, Reznick DN, Kinnison MT, Hendry AP (2006) The relative influence of natural selection and geography on gene flow in guppies. Molecular Ecology, 15, 49 62.
9. Einum S, Fleming I (2001) Implications of stocking: ecological interactions between wild and released salmonids. Nordic Journal of Freshwater Research, 75, 56 70.
10. Eldridge WH, Naish KA (2007) Long-term effects of translocation and release numbers on fine-scale population structure among coho salmon (Oncorhynchus kisutch). Molecular Ecology, 16, 2407 2421.
11. Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47 50.
12. Finnegan AK, Stevens JR (2008) Assessing the long-term genetic impact of historical stocking events on contemporary populations of Atlantic salmon (Salmo salar). Fisheries Management and Ecology, 15, 315 326.
13. Ford MJ (2002) Selection in captivity during supportive breeding may reduce fitness in the wild. Conservation Biology, 16, 815 825.
14. Frankham R (2005) Stress and adaptation in conservation genetics. Journal of Evolutionary Biology, 18, 750 755.
15. Frankham R (2008) Genetic adaptation to captivity in species conservation programs. Molecular Ecology, 17, 325 333.
16. Fraser JM (1981) Comparative survival and growth of planted wild, hybrid, and domestic strains of brook trout (Salvelinus fontinalis) in Ontario lakes. Canadian Journal of Fisheries and Aquatic Sciences, 38, 1672 1684.
17. Glaubitz JC (2004) Convert: a user-friendly program to reformat diploid genotypic data for commonly used population genetic software packages. Molecular Ecology Notes, 4, 309 310.
18. Goudet J (1995) fstat (Version 1.2): A computer program to calculate F-statistics. Journal of Heredity, 86, 485 486.
19. Griffiths AM, Bright D, Stevens JR (2009) Comparison of patterns of genetic variability in wild and supportively bred stocks of brown trout, Salmo trutta. Fisheries Management and Ecology, 16, 514 519.
20. Gross MR (1998) One species with two biologies: Atlantic salmon (Salmo salar) in the wild and in aquaculture. Canadian Journal of Fisheries and Aquatic Sciences, 55 (Suppl.1 131 144.
21. Halbinsen MA, Wilson CC (2009) Variable introgression from supplemental stocking in Southern Ontario populations of lake trout. Transactions of the American Fisheries Society, 137, 699 719.
22. Hansen MM (2002) Estimating the long-term effects of stocking domesticated trout into wild brown trout (Salmo trutta) populations: an approach using microsatellite DNA analysis of historical and contemporary samples. Molecular Ecology, 11, 1003 1015.
23. Hansen MM, Mensberg KLD (2009) Admixture analysis of stocked brown trout populations using mapped microsatellite DNA markers: indigenous trout persist in introgressed populations. Biology Letters, 5, 656 659.
24. Hansen MM, Bekkevold D, Jensen LF, Mensberg K-LD, Nielsen EE (2006) Genetic restoration of a stocked brown trout (Salmo trutta) population using microsatellite DNA analysis of historical and contemporary samples. Journal of Applied Ecology, 43, 669 679.
25. Hansen MM, Fraser DJ, Meier K, Mensberg K-LD (2009) Sixty years of anthropogenic pressure: a spatio-temporal genetic analysis of brown trout populations subject to stocking and population declines. Molecular Ecology, 18, 2549 2562.
26. Heath DD, Heath JW, Bryden CA, Johnson RM, Fox CW (2003) Rapid evolution of egg size in captive salmon. Science, 299, 1738 1740.
27. Hindar K, Ryman N, Utter F (1991) Genetic-effects of cultured fish on natural fish populations. Canadian Journal of Fisheries and Aquatic Sciences, 48, 945 957.
28. Huntingford FA (2004) Implications of domestication and rearing conditions for the behaviour of cultivated fishes. Journal of Fish Biology, 65 (Suppl. A 122 142.
29. Hutchings JA, Fraser DJ (2008) The nature of fisheries- and farming-induced evolution. Molecular Ecology, 17, 294 313.
30. International Union for Conservation of Nature (2009) Resolutions and Recommendations. IUCN
31. Kalinowski ST, Taper ML, Marshall TC (2007) Revising how the computer program cervus accommodates genotyping error increases success in paternity assignment. Molecular Ecology, 16, 1099 1106.
32. Karaiskou N, Triantafyllidis A, Katsares V, Abatzopoulos TJ, Triantaphyllidis C (2009) Microsatellite variability of wild and farmed populations of Sparus aurata. Journal of Fish Biology, 74, 1816 1825.
33. Lachance S, Magnan P (1990) Performance of domestic, hybrid, and wild strains of brook trout, Salvelinus fontinalis, after stocking: the impact of intraspecific and interspecific competition. Canadian Journal of Fisheries and Aquatic Sciences, 47, 2278 2284.
34. Mantel N (1967) The detection of disease clustering and a generalised regression approach. Cancer Research, 27, 209 220.
35. Marshall TC, Slate J, Kruuk LEB, Pemberton JM (1998) Statistical confidence for likelihood-based paternity inference in natural populations. Molecular Ecology, 7, 639 655.
36. Martin S, Savaria JY, Audet C, Bernatchez L (1997) Microsatellites reveal no evidence for inbreeding effects but low inter-stock genetic diversity among brook charr stocks used for reproduction in Québec. Bulletin of the Aquaculture Association of Canada, 97, 21 23.
37. Ministère des Ressources Naturelles et de la Faune du Québec (2008) Lignes directrices sur les ensemencements de poissons. Secteur Faune Québec, Direction de l'expertise sur la faune et ses habitats.
38. Normandeau E, Hutchings JA, Fraser DJ, Bernatchez L (2009) Population-specific gene expression responses to hybridization between farm and wild Atlantic salmon. Evolutionary Applications, 2, 489 503. doi.
39. Olsen JB, Flannery BG, Beacham TD et al. (2008) The influence of hydrographic structure and seasonal run timing on genetic diversity and isolation-by-distance in chum salmon (Oncorhynchus keta). Canadian Journal of Fisheries and Aquatic Sciences, 65, 2026 2042.
40. Poissant J, Knight TW, Ferguson MM (2005) Nonequilibrium conditions following landscape rearrangement: the relative contribution of past and current hydrological landscapes on the genetic structure of a stream-dwelling fish. Molecular Ecology, 14, 1321 1331.
41. Pritchard JK, Stephens M, Donnely P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945 959.
42. Roberge C, Einum S, Guderley H, Bernatchez L (2006) Rapid parallel evolutionary changes of gene transcription profiles in farmed Atlantic salmon. Molecular Ecology, 15, 9 20.
43. Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 1219 1228.
44. Rousset F (2008) GENEPOP ' 007: a complete re-implementation of the GENEPOP software for Windows and Linux. Molecular Ecology Resources, 8, 103 106.
45. Ruzzante DE, Hansen MM, Meldrup D, Ebert KM (2004) Stocking impact and migration pattern in an anadromous brown trout (Salmo trutta) complex: where have all the stocked spawning sea trout gone? Molecular Ecology, 13, 1433 1445.
46. Shikano T, Shimada Y, Suzuki H (2008) Comparison of genetic diversity at microsatellite loci and quantitative traits in hatchery populations of Japanese flounder Paralichthys olivaceus. Journal of Fish Biology, 72, 386 399.
47. Small MP, Currens K, Johnson TH, Frye AE, Von Bargen JF (2009) Impacts of supplementation: genetic diversity in supplemented and unsupplemented populations of summer chum salmon (Oncorhynchus keta) in Puget Sound (Washington, USA). Canadian Journal of Fisheries and Aquatic Sciences, 66, 1216 1229.
48. Stockwell CA, Hendry AP, Kinnison MT (2003) Contemporary evolution meets conservation biology. Trends in Ecology & Evolution, 18, 94 101.
49. Taylor EB, Tamkee P, Sterling G, Hughson W (2007) Microsatellite DNA analysis of rainbow trout (Oncorhynchus mykiss) from western Alberta, Canada: native status and evolutionary distinctiveness of "Athabasca" rainbow trout. Conservation Genetics, 8, 1 15.
50. Waples RS, Hendry AP (2008) Evolutionary perspectives on salmonid conservation and management. Evolutionary Applications, 1, 183 188.
51. Weir BS, Cockerman CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358 1370.