Variable introgression from supplemental stocking in southern Ontario populations of Lake trout

Transactions of the American Fisheries Society

Volumn 138, Issue 4, 2009, Pages 699-719

  Halbisen, Michael A ^a   Wilson, Chris C ^a  

^a TRENT UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BAYESIAN ANALYSIS; FOOD SUPPLEMENTATION; GENETIC MARKER; HATCHERY; HOMOGENEITY; INTROGRESSION; NATIVE SPECIES; SALMONID; SAMPLING; STOCKING DENSITY;

CANADA; ONTARIO [CANADA];

SALMONIDAE; SALVELINUS NAMAYCUSH;

EID: 77951995992     PISSN: 00028487     EISSN: 15488659     Source Type: Journal    
DOI: 10.1577/T07-135.1     Document Type: Article

References (74)

1. Allendorf, F. W., R. F. Leary, P. Spruell, and J. K. Wenburg. 2001. The problems with hybrids: setting conservation guidelines. Trends in Ecology and Evolution 16:613-622.
2. Angers, B., L. Bernatchez, A. Angers, and L. Desgroseillers. 1995. Specific microsatellite loci for brook charr (Salvelinus fontinalis) reveal strong population subdivision on a microgeographic scale. Journal of Fish Biology 47(Supplement A):177-185.
3. Araguas, R. M., N. Sanz, C. Pla, and J. L. Garcia-Marin. 2004. Breakdown of the brown trout evolutionary history due to hybridization between native and cultivated fish. Journal of Fish Biology 65(Supplement A):28-37.
4. Araki, H., B. Cooper, and M. S. Blouin. 2007. Genetic effects of captive breeding cause a rapid, cumulative fitness decline in the wild. Science 318:100-103.
5. Banks, M. A., M. S. Blouin, B. A. Baldwin, V. K. Rashbrook, H. A. Fitzgerald, S. M. Blankenship, and D. Hedgecock. 1999. Isolation and inheritance of microsatellites in chinook salmon (Oncorhynchus tshawytscha). Journal of Heredity 90:281-288.
6. Berejikian, B. A., E. P. Tezak, S. L. Schroder, C. M. Knudsen, and J. J. Hard. 1997. Reproductive behavioral interactions between wild and captively reared coho salmon (Oncorhynchus kisutch). ICES (International Council for the Exploration of the Sea) Journal of Marine Science 54:1040-1050.
7. Brannon, E. L., D. F. Amend, M. A. Cronin, J. E. Lannan, S. LaPatra, W. J. McNeil, R. E. Noble, C. E. Smith, A. J. Talbot, G. A. Wedemeyer, and H. Westers. 2004. The controversy about salmon hatcheries. Fisheries 29(9):13-31.
8. Corander, J., and P. Marttinen. 2006. Bayesian identification of admixture events using multilocus molecular markers. Molecular Ecology 15:2833-2843.
9. Cornuet, J.-M., S. Piry, G. Luikart, A. Estoup, and M. Solignac. 1999. New methods employing multilocus genotypes to select or exclude populations of origins of individuals. Genetics 153:1989-2000.
10. Elrod, J., R. O'Gorman, C. Schneider, T. Eckert, T. Schaner, J. Bowlby, and L. Schleen. 1995. Lake trout rehabilitation in Lake Ontario. Journal of Great Lakes Research 21(Supplement 1):83-107.
11. Epifanio, J. 2000. Status of coldwater fishery management in the United States: an overview of state programs. Fisheries 25(7):13-27.
12. Estoup, A., and J.-M. Cornuet. 2004. Microsatellite evolution: inferences from population data. Pages 49-65 in D. B. Goldstein and C. Schlotterer, editors. Microsatellites: evolution and applications. Oxford University Press, Oxford, UK.
13. Evanno, G., S. Regnaut, and J. Goudet. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology 14:2611-2620.
14. Evans, D., and C. Olver. 1995. Introduction of lake trout (Salvelinus namaycush) to inland lakes of Ontario, Canada: factors contributing to successful colonization. Journal of Great Lakes Research 21(Supplement 1):30-53.
15. Evans, D., and C. Willox. 1991. Loss of exploited, indigenous populations of lake trout, Salvelinus namaycush by stocking of non-native stocks. Canadian Journal of Fisheries and Aquatic Sciences 48(Supplement 1):134-147.
16. Evans, D. O., J. Brisbane, J. M. Casselman, K. E. Coleman, C. A. Lewis, P. G. Sly, D. L. Wales, and C. C. Willox. 1991. Anthropogenic stressors and diagnosis of their effects on lake trout populations in Ontario lakes. Lake trout synthesis. Ontario Ministry of Natural Resources, Toronto.
17. Fleming, I. A., B. Jonsson, and R. Gross. 1994. Phenotypic divergence of sea-ranched, farmed, and wild salmon. Canadian Journal of Fisheries and Aquatic Sciences 52:2808-2824.
18. Frankham, R., J. D. Ballou, and D. A. Briscoe. 2002. Introduction to conservation genetics. Cambridge University Press, Cambridge, UK.
19. Gotelli, N. J., and A. M. Ellison. 2004. A primer of ecological statistics. Sinauer, Sunderland, Massachusetts.
20. Goudet, J. 2001. FSTAT, a program to estimate and test gene diversities and fixation indices, version 2.9.3.2. Available: www2.unil.ch. (December 2007).
21. Grewe, P., and P. Hebert. 1988. Mitochondrial DNA variation among broodstocks of the lake trout, Salvelinus namaycush. Canadian Journal of Fisheries and Aquatic Sciences 45:2114-2122.
22. Grewe, P. M., C. C. Krueger, C. F. Aquadro, E. Bermingham, H. L. Kincaid, and B. May. 1993. Mitochondrial DNA variation among lake trout (Salvelinus namaycush) strains stocked into Lake Ontario. Canadian Journal of Fisheries and Aquatic Sciences 50:2397-2403.
23. Gunn, J. M., M. J. McMurtry, J. N. Bowlby, J. M. Casselman, and V. A. Liimatainen. 1987. Survival and growth of stocked lake trout in relation to body size, stocking season, lake acidity, and biomass of competitors. Transactions of the American Fisheries Society 116:618-627.
24. Gunn, J. M., R. J. Steedman, and R. Ryder, editors. 2004. Boreal Shield Watersheds: lake trout ecosystems in a changing environment. CRC Press, Boca Raton, Florida.
25. Hilborn, R. 1992. Hatcheries and the future of salmon in the northwest. Fisheries 17(1):5-8.
26. Hindar, K., N. Ryman, and F. Utter. 1991. Genetic effects of cultured fish on natural fish populations. Canadian Journal of Fisheries and Aquatic Sciences 48:945-957.
27. Ihssen, P. E., J. M. Casselman, G. W. Martin, and R. B. Phillips. 1988. Biochemical genetic differentiation of lake trout (Salvelinus namaycush) stocks of the Great Lakes region. Canadian Journal of Fisheries and Aquatic Sciences 45:1018-1029.
28. IUBMB (International Union of Biochemistry and Molecular Biology). 1992. Enzyme nomenclature 1992. Academic Press, San Diego, California.
29. Jonsson, B. 1997. A review of ecological and behavioral interactions between cultured and wild Atlantic salmon. ICES (International Council for the Exploration of the Sea) Journal of Marine Science 54:1031-1039.
30. Kerr, S. J. 2001. Lake trout stocking in inland lakes: an annotated bibliography and literature review. Ontario Ministry of Natural Resources, Peterborough, Canada.
31. Langella, O. 1999. Populations 1.2.28: a population genetic software. CNRS UPR9034. Available: www.bioinformatics.org. (December 2007).
32. Leider, S. A., M. W. Chilcote, and J. J. Loch. 1986. Comparative life history characteristics of hatchery and wild steelhead trout of summer and winter races in the Kalama River, Washington. Canadian Journal of Fisheries and Aquatic Sciences 43:1398-1409.
33. MacLean, J. A., D. O. Evans, N. V. Martin, and R. L. DesJardine. 1981. Survival, growth, spawning distribution, and movements of introduced and native lake trout (Salvelinus namaycush) in two inland Ontario lakes. Canadian Journal of Fisheries and Aquatic Sciences 38:1685-1700.
34. Manel, S., P. Berthier, and G. Luikart. 2002. Detecting wildlife poaching: identifying the origin of individuals with Bayesian assignment tests and multilocus genotypes. Conservation Biology 16:650-659.
35. Mobrand, L. E., J. Barr, L. Blankenship, D. E. Campton, T. T. P. Evelyn, T. A. Flagg, C. V. W. Mahnken, L. W. Seeb, P. R. Seidel, and W. W. Smoker. 2005. Hatchery reform in Washington State: principles and emerging issues. Fisheries 30(6):16-23.
36. Moran, P. 2002. Current conservation genetics: building an ecological approach to the synthesis of molecular and quantitative genetic methods. Ecology of Freshwater Fish 11:30-55.
37. Moran, P., J. Perez, J. Dumas, E. Beall, and E. Garcia-Vasquez. 2005. Stocking-related patterns of genetic variation at enzymatic loci in south European Atlantic salmon populations. Journal of Fish Biology 67(Supplement A):185-199.
38. Nehlsen, W., J. E. Williams, and J. A. Lichatowich. 1991. Pacific salmon at the crossroads: stocks at risk from California, Oregon, Idaho, and Washington. Fisheries 16(2):4-21.
39. Nei, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York.
40. Nei, M., F. Tajima, and Y. Tateno. 1983. Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data. Journal of Molecular Evolution 19:355-369.
41. Nickelson, T. 2003. The influence of hatchery coho salmon (Oncorhynchus kisutch) on the productivity of wild coho salmon populations in Oregon coastal basins. Canadian Journal of Fisheries and Aquatic Sciences 60:1050-1056.
42. Olsen, J. B., P. Bentzen, and J. E. Seeb. 1998. Characterization of seven microsatellite loci derived from pink salmon. Molecular Ecology 7:1087-1089.
43. OMNR (Ontario Ministry of Natural Resources). 1989. Lake trout lakes in Ontario. OMNR, Lake Trout Community Synthesis, Toronto.
44. OMNR. 2003. Handbook of stocks available in the provincial fish culture section. OMNR, Fish Culture Section, Fish and Wildlife Branch, Peterborough, Canada.
45. O'Reilly, P. T., L. C. Hamilton, S. K. McConnell, and J. W. Wright. 1996. Rapid analysis of genetic variation in Atlantic salmon (Salmo salar) by PCR multiplexing of dinucleotide and tetranucleotide microsatellites. Canadian Journal of Fisheries and Aquatic Sciences 53:2292-2298
46. Page, K. S., K. T. Scribner, K. R. Bennett, L. M. Garzel, and M. K. Burnham-Curtis. 2003. Genetic assessment of strain-specific sources of lake trout recruitment in the Great Lakes. Transactions of the American Fisheries Society 132:877-894.
47. Page, R. D. M. 1996. TREEVIEW: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12:357-358.
48. Park, S. D. E. 2001. Trypanotolerance in West African cattle and the population genetic effects of selection. Doctoral dissertation. University of Dublin.
49. Peakall, R., and P. E. Smouse. 2006. GenAlEx 6: Genetic Analysis in Excel, population genetic software for teaching and research. Molecular Ecology Notes 6:288-295.
50. Piller, K. R., C. C. Wilson, C. E. Lee, and J. Lyons. 2005. Conservation genetics of inland lake trout in the upper Mississippi River basin: stocked or native ancestry? Transactions of the American Fisheries Society 134:789-802.
51. Piry, S., A. Alapetite, J.-M. Cornuet, D. Paetkau, L. Baudouin, and A. Estoup. 2004. GeneClass2: a software for genetic assignment and first-generation migrant detection. Journal of Heredity 95:536-539.
52. Post, J. R., M. Sullivan, S. Cox, N. P. Lester, C. J. Walters, E. A. Parkinson, A. J. Paul, L. Lackson, and B. J. Shuter. 2002. Canada's recreational fisheries: the invisible collapse? Fisheries 27(1):6-19.
53. Powell, M. J., M. F. Bernier, S. J. Kerr, G. Leering, M. Miller, W. G. A. Samis, and M. Pellegrini. 1986. Returns of hatchery-reared lake trout from eight lakes in northeastern Ontario. Ontario Ministry of Natural Resources, Toronto.
54. Powell, M. J., and L. Carl. 2004. Lake trout stocking in small lakes: factors affecting success. Pages 219-238 in J. M. Gunn, R. J. Steedman, and R. Ryder, editors. Boreal Shield Watersheds: lake trout ecosystems in a changing environment. CRC Press, Boca Raton, Florida.
55. Pritchard, J. K., M. Stephens, and P. Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959.
56. Pritchard, J. K., X. Wen, and D. Falush. 2007. Documentation for STRUCTURE software: version 2.2. Chicago.
57. Rannala, B., and J. L. Mountain. 1997. Detecting immigration by using multilocus genotypes. Proceedings of the National Academy of Sciences of the United States of America 94:9197-9201.
58. Raymond, M., and F. Rousset. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity 86:248-249.
59. Reisenbichler, R. R., and J. D. McIntyre. 1977. Genetic differences in growth and survival of juvenile hatchery and wild steelhead trout, Salmo gairdneri. Journal of the Fisheries Research Board of Canada 34:123-128.
60. Rice, W. R. 1989. Analyzing tables of statistical tests. Evolution 43:223-225.
61. Rosenburg, N. A. 2004. DISTRUCT: a program for the graphical display of population structure. Molecular Ecology Notes 4:137-138.
62. Ryder, R. A. 1965. A method for estimating potential fish production from northern temperate lakes. Transactions of the American Fisheries Society 94:214-218.
63. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Woodbury, New York.
64. Scribner, K. T., J. R. Gust, and R. L. Fields. 1996. Isolation and characterization of novel salmon microsatellite loci: cross-species amplification and population genetics applications. Canadian Journal of Fisheries and Aquatic Sciences 53:833-841.
65. Shuter, B. J., M. L. Jones, R. M. Korver, and N. P. Lester. 1998. A general, life history based model for regional management of fish stocks: the inland lake trout (Salvelinus namaycush) fisheries of Ontario. Canadian Journal of Fisheries and Aquatic Sciences 55:2161-2177.
66. Stott, W. 1998. Genetic variation within and among Ontario hatchery stocks of lake trout (Salvelinus namaycush) as measured by three molecular marker systems: applications to rehabilitation and hatchery management. Doctoral dissertation. McMaster University, Hamilton, Ontario, Canada.
67. Taylor, E. B. 1986. Differences in morphology between wild and hatchery populations of juvenile coho salmon. Progressive Fish-Culturist 48:171-176.
68. Taylor, E. B., Z. A. Redenbach, A. B. Costello, S. J. Pollard, and C. J. Pacas. 2001. Nested analysis of genetic diversity in northwestern North American char, Dolly Varden (Salvelinus malma) and bull trout (Salvelinus confluentus). Canadian Journal of Fisheries and Aquatic Sciences 58:406-420.
69. Unwin, M. J., and G. J. Glova. 1997. Changes in life history parameters in a naturally spawning population of chinook salmon (Oncorhynchus tshawytscha) associated with releases of hatchery-reared fish. Canadian Journal of Fisheries and Aquatic Sciences 54:1235-1245.
70. Wilson, C. C., and P. D. N. Hebert. 1996. Phylogeographic origins of lake trout (Salvelinus namaycush) in eastern North America. Canadian Journal of Fisheries and Aquatic Sciences 53:2764-2775.
71. Wilson, C. C., and P. D. N. Hebert. 1998. Phylogeography and postglacial dispersal of lake trout (Salvelinus namaycush) in North America. Canadian Journal of Fisheries and Aquatic Sciences 55:1010-1024.
72. Wilson, C. C., P. D. N. Hebert, J. D. Reist, and J. B. Dempson. 1996. Phylogeography and postglacial dispersal of arctic charr Salvelinus alpinus in North America. Molecular Ecology 5:187-197.
73. Wilson, C. C., T. M. Lavender, and J. Black. 2007. Genetic assessment of walleye (Sander vitreus) restoration efforts and options in Nipigon Bay and Black Bay, Lake Superior. Journal of Great Lakes Research 33(Supplement 1):133-144.
74. Wilson, C. C., and N. E. Mandrak. 2004. History and evolution of lake trout in shield lakes: past and future challenges. Pages 21-36 in J. M. Gunn, R. J. Steedman, and R. Ryder, editors. Boreal Shield Watersheds: lake trout ecosystems in a changing environment. CRC Press, Boca Raton, Florida.