Cellular barcoding tool for clonal analysis in the hematopoietic system

Blood

Volumn 115, Issue 13, 2010, Pages 2610-2618

  Gerrits, Alice ^a   Dykstra, Brad ^a   Kalmykowa, Olga J ^a   Klauke, Karin ^a   Verovskaya, Evgenia ^a   Broekhuis, Mathilde J C ^a   De Haan, Gerald ^a   Bystrykh, Leonid V ^a  

^a UNIVERSITY MEDICAL CENTER GRONINGEN   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

RETROVIRUS VECTOR;

ANIMAL CELL; ANIMAL EXPERIMENT; ARTICLE; CELL EXPANSION; CLONAL VARIATION; CONTROLLED STUDY; GENE EXPRESSION; GENE SEQUENCE; GENETIC TRANSFECTION; GENOME; HEMATOPOIETIC STEM CELL; HEMATOPOIETIC SYSTEM; HOST CELL; IN VITRO STUDY; IN VIVO STUDY; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROGENY; TRANSPLANTATION; VALIDATION STUDY;

EID: 77950981309     PISSN: 00064971     EISSN: 15280020     Source Type: Journal    
DOI: 10.1182/blood-2009-06-229757     Document Type: Article

References (33)

1. Smith LG, Weissman IL, Heimfeld S. Clonal analysis of hematopoietic stem-cell differentiation in vivo. Proc Natl Acad Sci U S A. 1991;88(7):2788-2792. (Pubitemid 21916504)
2. Zhong RK, Astle CM, Harrison DE. Distinct developmental patterns of short-term and long-term functioning lymphoid and myeloid precursors defined by competitive limiting dilution analysis in vivo. J Immunol. 1996;157(1):138-145.
3. Cho RH, Muller-Sieburg CE. High frequency of long-term culture-initiating cells retain in vivo repopulation and self-renewal capacity. Exp Hematol. 2000;28(9):1080-1086.
4. Takano H, Ema H, Sudo K, Nakauchi H. Asymmetric division and lineage commitment at the level of hematopoietic stem cells: inference from differentiation in daughter cell and granddaughter cell pairs. J Exp Med. 2004;199(3):295-302. (Pubitemid 38252042)
5. Ema H, Sudo K, Seita J, et al. Quantification of self-renewal capacity in single hematopoietic stem cells from normal and Lnk-deficient mice. Dev Cell. 2005;8(6):907-914.
6. Dykstra B, Kent D, Bowie M, et al. Long-term propagation of distinct hematopoietic differentiation programs in vivo. Cell Stem Cell. 2007;1(2): 218-229.
7. Gilliland DG, Blanchard KL, Bunn HF. Clonality in acquired hematologic disorders. Annu Rev Med. 1991;42491-42506
8. Joyner A, Keller G, Phillips RA, Bernstein A. Retrovirus transfer of a bacterial gene into mouse haematopoietic progenitor cells. Nature. 1983; 305(5934):556-558. (Pubitemid 13013371)
9. Williams DA, Lemischka IR, Nathan DG, Mulligan RC. Introduction of new genetic material into pluripotent haematopoietic stem cells of the mouse. Nature. 1984;310(5977):476-480.
10. Miller AD, Eckner RJ, Jolly DJ, Friedmann T, Verma IM. Expression of a retrovirus encoding human HPRT in mice. Science. 1984;225(4662): 630-632.
11. Capel B, Hawley RG, Mintz B. Long- and short-lived murine hematopoietic stem cell clones individually identified with retroviral integration markers. Blood. 1990;75(12):2267-2270. (Pubitemid 20202300)
12. Jordan CT, Lemischka IR. Clonal and systemic analysis of long-term hematopoiesis in the mouse. Genes Dev. 1990;4(2):220-232. (Pubitemid 20062749)
13. Dick JE, Magli MC, Huszar D, Phillips RA, Bernstein A. Introduction of a selectable gene into primitive stem cells capable of long-term reconstitution of the hemopoietic system of W/Wv mice. Cell. 1985;42(1):71-79. (Pubitemid 16237557)
14. Keller G, Paige C, Gilboa E, Wagner EF. Expression of a foreign gene in myeloid and lymphoid cells derived from multipotent haematopoietic precursors. Nature. 1985;318(6042):149-154. (Pubitemid 16192584)
15. Lemischka IR, Raulet DH, Mulligan RC. Developmental potential and dynamic behavior of hematopoietic stem cells. Cell. 1986;45(6):917-927.
16. Nolta JA, Dao MA, Wells S, Smogorzewska EM, Kohn DB. Transduction of pluripotent human hematopoietic stem cells demonstrated by clonal analysis after engraftment in immune-deficient mice. Proc Natl Acad Sci U S A. 1996;93(6): 2414-2419. (Pubitemid 26104364)
17. Schmidt M, Hoffmann G, Wissler M, et al. Detection and direct genomic sequencing of multiple rare unknown flanking DNA in highly complex samples. Hum Gene Ther. 2001;12(7):743-749.
18. Kustikova O, Fehse B, Modlich U, et al. Clonal dominance of hematopoietic stem cells triggered by retroviral gene marking. Science. 2005; 308(5725):1171-1174.
19. Kamminga LM, Bystrykh LV, De Boer A, et al. The Polycomb group gene Ezh2 prevents hematopoietic stem cell exhaustion. Blood. 2006;107(5): 2170-2179. (Pubitemid 43289403)
20. Dykstra B, Schreuder J, Bystrykh L, De Haan G. Flow cytometric purification of primitive hematopoietic progenitors from bone marrow transduction cultures permits clonal analysis of retroviral integrations. Paper presented at Annual Meeting of the Society for Hematology and Stem Cells (ISEH), July 9-12, 2008. Boston, MA.
21. Kent, J. Mouse BLAT Search. http://genome.ucsc.edu/cgi-bin/hgBlat. Accessed June 9, 2009.
22. Muller-Sieburg CE, Cho RH, Thoman M, Adkins B, Sieburg HB. Deterministic regulation of hematopoietic stem cell self-renewal and differentiation. Blood. 2002;100(4):1302-1309. (Pubitemid 34864285)
23. Yamazaki S, Iwama A, Takayanagi S, et al. Cytokine signals modulated via lipid rafts mimic niche signals and induce hibernation in hematopoietic stem cells. EMBO J. 2006;25(15):3515-3523. (Pubitemid 44264862)
24. Wilson A, Laurenti E, Oser G, et al. Hematopoietic stem cells reversibly switch from dormancy to self-renewal during homeostasis and repair. Cell. 2008;135(6):1118-1129.
25. Foudi A, Hochedlinger K, Van Buren D, et al. Analysis of histone 2B-GFP retention reveals slowly cycling hematopoietic stem cells. Nat Biotechnol. 2009;27(1):84-90.
26. Roeder I, Horn K, Sieburg HB, et al. Characterization and quantification of clonal heterogeneity among hematopoietic stem cells: a model-based approach. Blood. 2008;112(13):4874-4883.
27. Roeder I, Loeffler M. A novel dynamic model of hematopoietic stem cell organization based on the concept of within-tissue plasticity. Exp Hematol. 2002;30(8):853-861. (Pubitemid 34851245)
28. Schepers K, Swart E, Van Heijst JW, et al. Dissecting T cell lineage relationships by cellular barcoding. J Exp Med. 2008;205(10):2309-2318.
29. Van Heijst JW, Gerlach C, Swart E, et al. Recruitment of antigen-specific CD8+ T cells in response to infection is markedly efficient. Science. 2009;325(5945):1265-1269.
30. Hacein-Bey-Abina S, Von Kalle C, Schmidt M, et al. LMO2-associated clonal T cell proliferation in two patients after gene therapy for SCID-X1. Science. 2003;302(5644):415-419.
31. Cartier N, Hacein-Bey-Abina S, Bartholomae CC, et al. Hematopoietic stem cell gene therapy with a lentiviral vector in X-linked adrenoleukodystrophy. Science. 2009;326(5954):818-823.
32. Naldini L. Medicine. A comeback for gene therapy. Science. 2009;326(5954):805-806.
33. Gene therapy deserves a fresh chance [editorial]. Nature. 2009;461(7268):1173.