-
1
-
-
0037685280
-
Expression profiling reveals off-target gene regulation by RNAi
-
Jackson,A.L., Bartz,S.R., Schelter,J., Kobayashi,S.V., Burchard,J., Mao,M., Li,B., Cavet,G. and Linsley,P.S. (2003) Expression profiling reveals off-target gene regulation by RNAi. Nat. Biotech., 21, 635-637.
-
(2003)
Nat. Biotech.
, vol.21
, pp. 635-637
-
-
Jackson, A.L.1
Bartz, S.R.2
Schelter, J.3
Kobayashi, S.V.4
Burchard, J.5
Mao, M.6
Li, B.7
Cavet, G.8
Linsley, P.S.9
-
2
-
-
10744219688
-
Short interfering RNAs can induce unexpected and divergent changes in the levels of untargeted proteins in mammalian cells
-
Scacheri, P.C., Rozenblatt-Rosen,O., Caplen,N.J., Wolfsberg,T.G., Umayam,L., Lee,J.C., Hughes,C.V., Shanmugam,K.S., Bhattacharjee,A., Meyerson,M. and Collins,F.S. (2004) Short interfering RNAs can induce unexpected and divergent changes in the levels of untargeted proteins in mammalian cells. Proc. Natl. Acad. Sci., USA., 101, 1892-1897.
-
(2004)
Proc. Natl. Acad. Sci., USA
, vol.101
, pp. 1892-1897
-
-
Scacheri, P.C.1
Rozenblatt-Rosen, O.2
Caplen, N.J.3
Wolfsberg, T.G.4
Umayam, L.5
Lee, J.C.6
Hughes, C.V.7
Shanmugam, K.S.8
Bhattacharjee, A.9
Meyerson, M.10
Collins, F.S.11
-
3
-
-
23344438420
-
siRNA-mediated off-target gene silencing triggered by a 7 nt complementation
-
Lin,X., Ruan,X., Anderson,M.G, McDowell,J.A., Kroeger,P.E., Resik,S.W. and Shen,Y. (2005) siRNA-mediated off-target gene silencing triggered by a 7 nt complementation. Nucleic Acids Res., 33, 4527-14525
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 4527-14525
-
-
Lin, X.1
Ruan, X.2
Anderson, M.G.3
McDowell, J.A.4
Kroeger, P.E.5
Resik, S.W.6
Shen, Y.7
-
4
-
-
33745612464
-
Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity
-
Jackson,A.L., Burchard,J., Schelter,J., Chau,B.N., Cleary,M., Lim,L. and Linsley,P.S. (2006) Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity. RNA, 12, 1179-1187.
-
(2006)
RNA
, vol.12
, pp. 1179-1187
-
-
Jackson, A.L.1
Burchard, J.2
Schelter, J.3
Chau, B.N.4
Cleary, M.5
Lim, L.6
Linsley, P.S.7
-
5
-
-
33646188259
-
3′ UTR seed matches, but not overall identity, are associated with RNAi off-targets
-
Birmingham,A., Anderson,E.M., Reynolds,A., Ilsley-Tyree,D., Leake,D., Fedorov,Y., Baskerville,S., Maksimova,E., Robinson,K., Karpilow,J., Marshall,W.S. and Khvorova,A. (2006) 3′ UTR seed matches, but not overall identity, are associated with RNAi off-targets. Nat. Methods, 3, 199-204.
-
(2006)
Nat. Methods
, vol.3
, pp. 199-204
-
-
Birmingham, A.1
Anderson, E.M.2
Reynolds, A.3
Ilsley-Tyree, D.4
Leake, D.5
Fedorov, Y.6
Baskerville, S.7
Maksimova, E.8
Robinson, K.9
Karpilow, J.10
Marshall, W.S.11
Khvorova, A.12
-
6
-
-
34250805982
-
MicroRNA targeting specificity in mammals: Determinants beyond seed pairing
-
Grimson, A., Farh,K.K., Johnston,W.K., Garrett-Engele,P., Lim,L.P. and Bartel,D.P. (2007) MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol. Cell, 27, 91-105.
-
(2007)
Mol. Cell
, vol.27
, pp. 91-105
-
-
Grimson, A.1
Farh, K.K.2
Johnston, W.K.3
Garrett-Engele, P.4
Lim, L.P.5
Bartel, D.P.6
-
7
-
-
58749086586
-
Thermodynamic stability and Watson-Crick base pairing in the seed duplex are major determinants of the efficiency of the siRNA-based off-target effect
-
Ui-Tei,K., Naito,Y., Nishi,K., Juni,A. and Saigo,K. (2008) Thermodynamic stability and Watson-Crick base pairing in the seed duplex are major determinants of the efficiency of the siRNA-based off-target effect. Nucleic Acids Res., 36, 7100-7109.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 7100-7109
-
-
Ui-Tei, K.1
Naito, Y.2
Nishi, K.3
Juni, A.4
Saigo, K.5
-
8
-
-
1642346273
-
Guidelines for the selection of highly effective siRNA sequences for mammalian and chick RNA interference
-
DOI 10.1093/nar/gkh247
-
Ui-Tei,K., Naito,Y., Takahashi,F., Haraguchi,T., Ohki-Hamazaki,H., Juni, A., Ueda,R. and Saigo,K. (2004) Guidelines for the selection of highly effective siRNA sequences for mammalian and chick RNA interference. Nucleic Acids Res., 32, 936-948. (Pubitemid 38854696)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.3
, pp. 936-948
-
-
Ui-Tei, K.1
Naito, Y.2
Takahashi, F.3
Haraguchi, T.4
Ohki-Hamazaki, H.5
Juni, A.6
Ueda, R.7
Saigo, K.8
-
9
-
-
42449091989
-
Functional dissection of siRNA sequence by systematic DNA substitution: Modified siRNA with a DNA seed arm is a powerful tool for mammalian gene silencing with significantly reduced off-target effect
-
DOI 10.1093/nar/gkn042
-
Ui-Tei,K., Naito,Y., Zenno,S., Nishi,K., Yamato,K., Takahashi,F., Juni, A. and Saigo,K. (2008) Functional dissection of siRNA sequence by systematic DNA sustitution: modified siRNA with a DNA seed arm is a powerful tool for mammalian gene silencing with significantly reduced off-target effect. Nucleic Acids Res., 36, 2136-2151. (Pubitemid 351566989)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.7
, pp. 2136-2151
-
-
Ui-Tei, K.1
Naito, Y.2
Zenno, S.3
Nishi, K.4
Yamato, K.5
Takahashi, F.6
Juni, A.7
Saigo, K.8
-
10
-
-
15944415071
-
Comparison of different melting temperature calculation methods for short DNA sequences
-
DOI 10.1093/bioinformatics/bti066
-
Panjkovich, A. and Melo, F. (2005) Comparison of different melting temperature calculation methods for short DNA sequences. Bioinformatics, 21, 711-722. (Pubitemid 40439407)
-
(2005)
Bioinformatics
, vol.21
, Issue.6
, pp. 711-722
-
-
Panjkovich, A.1
Melo, F.2
-
11
-
-
0000075467
-
Improved free-energy parameters for predictions of RNA duplex stability
-
Freier, A. M., Keirzek, R., Jaeger, J. A., Sugimoto, N., Caruthers, M. H., Neilson, T. and Turner, D. H. (1986) Improved free-energy parameters for predictions of RNA duplex stability. Proc. Natl. Acad. Sci. USA, 83, 9373-9377.
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 9373-9377
-
-
Freier, A.M.1
Keirzek, R.2
Jaeger, J.A.3
Sugimoto, N.4
Caruthers, M.H.5
Neilson, T.6
Turner, D.H.7
-
12
-
-
0029134549
-
Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes
-
Sugimoto, N., Nakano, S., Katoh, M., Matsumura, A., Nakamuta, H., Ohmichi, T., Yoneyama, M. and Sasaki, M. (1995) Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes. Biochemistry, 34, 11211-11216.
-
(1995)
Biochemistry
, vol.34
, pp. 11211-11216
-
-
Sugimoto, N.1
Nakano, S.2
Katoh, M.3
Matsumura, A.4
Nakamuta, H.5
Ohmichi, T.6
Yoneyama, M.7
Sasaki, M.8
-
13
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
Lim, L.P., Lau,N.C., Garrett-Engele,P., Grimson,A., Schelter,J.M., Castle,J., Bartel,D.P., Linsley,P.S. and Johnson,J.M. (2005) Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature, 433, 769-773.
-
(2005)
Nature
, vol.433
, pp. 769-773
-
-
Lim, L.P.1
Lau, N.C.2
Garrett-Engele, P.3
Grimson, A.4
Schelter, J.M.5
Castle, J.6
Bartel, D.P.7
Linsley, P.S.8
Johnson, J.M.9
-
14
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis,B.P., Burge,C.B. and Bartel,D.P. (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell, 120, 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
15
-
-
0016189342
-
Stability of ribonucleic acid double-stranded helices
-
Borer, P.M., Dengler, B., Tinoco, I.Jr. & Uhlenbeck, O.C. Stability of ribonucleic acid double-stranded helices. J. Mol. Biol. 86, 843-853 (1974).
-
(1974)
J. Mol. Biol.
, vol.86
, pp. 843-853
-
-
Borer, P.M.1
Dengler, B.2
Tinoco Jr., I.3
Uhlenbeck, O.C.4
-
16
-
-
0001550068
-
Predicting DNA duplex stability from the base sequence
-
Breslauer, K.J., Frank, R., Blocker, H. & Marky, L.A. Predicting DNA duplex stability from the base sequence. Proc. Natl. Acad. Sci. USA 83, 3746-3750 (1986). (Pubitemid 16062362)
-
(1986)
Proceedings of the National Academy of Sciences of the United States of America
, vol.83
, Issue.11
, pp. 3746-3750
-
-
Breslauer, K.J.1
Frank, R.2
Blocker, H.3
Marky, L.A.4
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