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Volumn , Issue , 2009, Pages 298-304

Reduced base-base interactions between the DNA seed and RNA target are the major determinants of a significant reduction in the off-target effect due to DNA-seed-containing siRNA

Author keywords

[No Author keywords available]

Indexed keywords

CLASS I; GENE SILENCING; MELTING TEMPERATURES; TARGET GENES;

EID: 77950959322     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/MHS.2009.5351913     Document Type: Conference Paper
Times cited : (2)

References (16)
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    • Jackson,A.L., Burchard,J., Schelter,J., Chau,B.N., Cleary,M., Lim,L. and Linsley,P.S. (2006) Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity. RNA, 12, 1179-1187.
    • (2006) RNA , vol.12 , pp. 1179-1187
    • Jackson, A.L.1    Burchard, J.2    Schelter, J.3    Chau, B.N.4    Cleary, M.5    Lim, L.6    Linsley, P.S.7
  • 7
    • 58749086586 scopus 로고    scopus 로고
    • Thermodynamic stability and Watson-Crick base pairing in the seed duplex are major determinants of the efficiency of the siRNA-based off-target effect
    • Ui-Tei,K., Naito,Y., Nishi,K., Juni,A. and Saigo,K. (2008) Thermodynamic stability and Watson-Crick base pairing in the seed duplex are major determinants of the efficiency of the siRNA-based off-target effect. Nucleic Acids Res., 36, 7100-7109.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 7100-7109
    • Ui-Tei, K.1    Naito, Y.2    Nishi, K.3    Juni, A.4    Saigo, K.5
  • 8
    • 1642346273 scopus 로고    scopus 로고
    • Guidelines for the selection of highly effective siRNA sequences for mammalian and chick RNA interference
    • DOI 10.1093/nar/gkh247
    • Ui-Tei,K., Naito,Y., Takahashi,F., Haraguchi,T., Ohki-Hamazaki,H., Juni, A., Ueda,R. and Saigo,K. (2004) Guidelines for the selection of highly effective siRNA sequences for mammalian and chick RNA interference. Nucleic Acids Res., 32, 936-948. (Pubitemid 38854696)
    • (2004) Nucleic Acids Research , vol.32 , Issue.3 , pp. 936-948
    • Ui-Tei, K.1    Naito, Y.2    Takahashi, F.3    Haraguchi, T.4    Ohki-Hamazaki, H.5    Juni, A.6    Ueda, R.7    Saigo, K.8
  • 9
    • 42449091989 scopus 로고    scopus 로고
    • Functional dissection of siRNA sequence by systematic DNA substitution: Modified siRNA with a DNA seed arm is a powerful tool for mammalian gene silencing with significantly reduced off-target effect
    • DOI 10.1093/nar/gkn042
    • Ui-Tei,K., Naito,Y., Zenno,S., Nishi,K., Yamato,K., Takahashi,F., Juni, A. and Saigo,K. (2008) Functional dissection of siRNA sequence by systematic DNA sustitution: modified siRNA with a DNA seed arm is a powerful tool for mammalian gene silencing with significantly reduced off-target effect. Nucleic Acids Res., 36, 2136-2151. (Pubitemid 351566989)
    • (2008) Nucleic Acids Research , vol.36 , Issue.7 , pp. 2136-2151
    • Ui-Tei, K.1    Naito, Y.2    Zenno, S.3    Nishi, K.4    Yamato, K.5    Takahashi, F.6    Juni, A.7    Saigo, K.8
  • 10
    • 15944415071 scopus 로고    scopus 로고
    • Comparison of different melting temperature calculation methods for short DNA sequences
    • DOI 10.1093/bioinformatics/bti066
    • Panjkovich, A. and Melo, F. (2005) Comparison of different melting temperature calculation methods for short DNA sequences. Bioinformatics, 21, 711-722. (Pubitemid 40439407)
    • (2005) Bioinformatics , vol.21 , Issue.6 , pp. 711-722
    • Panjkovich, A.1    Melo, F.2
  • 14
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    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis,B.P., Burge,C.B. and Bartel,D.P. (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell, 120, 15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.