Identification of chromosomal aberrations of metastatic potential in colorectal carcinoma

Genes Chromosomes and Cancer

Volumn 49, Issue 5, 2010, Pages 487-496

  Yamamoto, Shogo ^a   Midorikawa, Yutaka ^a,b   Morikawa, Teppei ^a,c   Nishimura, Yeji ^d   Sakamoto, Hirohiko ^d   Ishikawa, Shumpei ^a,c   Akagi, Kiwamu ^d   Aburatani, Hiroyuki ^a,e  

^a UNIVERSITY OF TOKYO   (Japan)

^b TEIKYO UNIVERSITY MIZONOKUCHI HOSPITAL   (Japan)

^c UNIVERSITY OF TOKYO   (Japan)

^d Department of Surgery   (Japan)

^e JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AGED; ALLELE; ARTICLE; CANCER PATIENT; CELL HETEROGENEITY; CHROMOSOME 15Q; CHROMOSOME 20Q; CHROMOSOME 7P; CHROMOSOME ABERRATION; CLINICAL ARTICLE; COLORECTAL CARCINOMA; CONTROLLED STUDY; FEMALE; GENE IDENTIFICATION; GENETIC ANALYSIS; GENOME; GENOTYPE; HETEROZYGOSITY LOSS; HUMAN; HUMAN TISSUE; LIVER METASTASIS; MALE; MEDICAL DECISION MAKING; METASTASIS; PRIORITY JOURNAL; PROGNOSIS;

AGED; CHROMOSOME ABERRATIONS; CHROMOSOME MAPPING; CLUSTER ANALYSIS; COLORECTAL NEOPLASMS; FEMALE; GENE DOSAGE; HUMANS; LIVER NEOPLASMS; LOSS OF HETEROZYGOSITY; MALE; MIDDLE AGED; NEOPLASM METASTASIS;

EID: 77950688881     PISSN: 10452257     EISSN: 10982264     Source Type: Journal    
DOI: 10.1002/gcc.20759     Document Type: Article

References (40)

1. Aaltonen LA, Pe.lt.om.aki P, Leach FS, Sistemen P, Pylkkanen L, Mecklin JP, Jarvinen H, Powell SM, Jen J, Hamilton SR, Petersen GM, Kinzler KW, Vogeistein B, de la Chapelle A. 1993. Clues to the pathogenesis of familial, colorectal cancer. Science 260:812-816.
2. Aragane H, Sakakura C, Nakanishi M, Yasuoka R, Fujita Y, Taniguchi Ii, Hagiwara A, Yamaguchi T, Abe T, Inazawa J, Yamagishi H. 2001. Chromosomal aberrations in colorectal cancers and liver metastases analyzed by comparative genomic hybridization. Int J Cancer 94:623-629.
3. Bignell GR, Huang J1 Greshock J, Watt S, Butler A, West S, Grigorova M, Jones KW, Wei W, Stratton MR, Futreal PA, Weber B, Shapero MH, Wooster R. 2004. High-resolution analysis of DNA copy number using oligonucleotide microarrays. Genome Res 14:287-295.
4. Boland CR, Thibodeau SN, Hamilton SR, Sidransky D, Eshleman JR, Burt RW, Meltzer SJ, Rodriguez-Bigas MA, Fodde R, Ranzani GN, Srivastava S. 1998. A National Cancer Institute Workshop on. microsatellite instability for cancer detection, and familial predisposition: development of international criteria for the determination of .microsatellite instability in colorectal cancer. Cancer Res 58:5248-5257.
5. Buffart TE, Coffa J, Hermsen MA, Carvalho B, van der Sijp JR, Ylstra B, Pals G, Schouten JP, Meijer GA. 2005. DNA copy number changes at 8ql 1-24 in metastasized colorectal cancer. Cell Oncol 27:57-65. (Pubitemid 40387193)
6. Carvalho B, Postma C, Mongera S, Hopmans E, Diskin S, van de Wiel MA, van Críekinge W, Thas O, Matthai A, Cuesta MA, Terhaar Sivé Droste JS, Craanen M1 Schrock E, Ylstra B, Meijer GA. 2009. Multiple putative oncogenes at the chromosome 20q amplicon contribute to colorectal adenoma to carcinoma progression. Gut 58:79-89.
7. Chin SF, Teschendorff AE, Marioni JC, Wang Y, Barbosa-M.ora.is NL, Thome NP, Costa JL, Pinder SE, van de Wiel MA, Green AR, Ellis IO, Porter PL, Tavare S, Brenton JD, Ylstra B, Caldas C. 2007. High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer. Genome Biol 8:R215.
8. Cortesio CL, Chan KT, Perrin BJ, Burton NO, Zhang S, Zhang ZY, Huttenlocher A. 2008. Calpain 2 and PTPlB function in a novel pathway with Src to regulate ¡nvadopodia dynamics and breast cancer cell invasion. J Cell Biol .180:957-971. (Pubitemid 351398422)
9. Diep CB, Kleivi K, Ribeiro FR, Teixeira MR, Lindgjaerde OC, Lothe RA. 2006. The order of genetic events associated with colorectal, cancer progression inferred from meta-analysis of copy number changes. Genes Chromosomes Cancer 45:31-41. (Pubitemid 46930859)
10. Gaasenbeek M, Howarth K, Rowan AJ, Gorman PA, Jones A, Chaplin T, Liu Y, Bicknell D, Davison EJ, Fiegler H, Carter NP, Roylance RR, Tonilinson IP, 2006. Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex changes and multiple forms of chromosomal instability in colorectal cancers. Cancer Res 66:3471-3479.
11. Gao J, Zhang H, Arbman G, Sun XF. 2008. RAD50/MRE11/ NBSl proteins in relation to tumour development and prognosis in patients with microsatellite stable colorectal cancer. Histol Histopathol 23:1495-1502.
12. Hidaka S, Yasutake T, Takeshita H, Kondo M, Tsuji T, Nanashima A, Sawai T, Yamaguchi H, Nakagoe T, Ayabe H, Tagawa Y. 2000. Differences in 20q 13.2 copy number between colorectal cancers with and without liver metastasis. Clin Cancer Res 6:271.2-2717.
13. Ishikawa S, Komura D, Tsuji S, Nishimura K, Yamamoto S, Panda B, Huang J, Fukayama M, Jones KW, Aburatani H. 2005. Allelic dosage analysis with genotyping microarrays. Biochem Biophys Res Commun 333:1309-1314.
14. Ishikubo T, Nishimura Y, Yamaguchi K, Khansuwan U, Arai Y, Kobayashi T, Ohkura Y, Hashiguchi Y, Tanaka Y, Akagi K. 2004. The clinical, features of rectal cancers with high-frequency microsatellite instability (MSI-H) in Japanese males. Cancer Lett 216:55-62.
15. Jiang JK, Chen YJ, Lin CH, Yu IT, Lin JK. 2005. Genetic changes and clonality relationship between primary colorectal cancers and their pulmonary metastases-An. analysis by comparative genomic hybridization. Genes Chromosomes Cancer 43:25-36.
16. Jones S, Chen WD, Parmigiani G, Diehl F, Beerenwinkel N, Antal T, Traulsen A, Nowak MA, Siegel C, Velculescu VE, Kinzler KW, Vogelstein B, Willis J, Markowitz SD. 2008. Comparative lesion sequencing provides insights into tumor evolution. Proc Natl Acad Sci USA 105:4283-4288.
17. Kallioniemi A, Kallioniemi OP, Sudar D, Rutovitz D, Gray JW, Waldman F, Pinkel D. 1992. Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors. Science 258:818-821.
18. Kim MY, Yim SII, Kwon MS, Kim. TM, Shin SII, Rang HM, Lee C, Chung YJ. 2006. Recurrent genomic alterations with impact on survival in colorectal cancer identified by genome-wide array comparative genomic hybridization. Gastroenterology 131:19131924. (Pubitemid 44958525)
19. Kinzier KW, Vogelstein B. 1996. Lessons from hereditary colorectal cancer. Cell 87:159-170.
20. Kurose K, Mine N, Doi D, Ota Y, Yoneyama K, Konishi H, Araki T, Emi M. 2000. Novel gene fusion of COX6C at 8q22-23 to HMGIC at 1.2ql5 in a uterine leiomyoma. Genes Chromosomes Cancer 27:303-307. (Pubitemid 30067460)
21. Lassmann S, Weis R, Makowiec F, Roth J, Danciu M, Hopt U, Werner M. 2007. Array CGH identifies distinct DNA copy number profiles of oncogenes and tumor suppressor genes in. chromosomal- and microsatellite-unstable sporadic colorectal carcinomas. J MoI Med 85:293-304. (Pubitemid 46295243)
22. Lehnerdt GF, Franz P, Zaqoul A, Schmitz KJ, Grehl S, Lang S, Schmid KW, Siffert W, Jahnke K, Frey UH. 2008. Overall and relapse-free survival in oropharyngeal and hypopharyngeal squamous cell carcinoma are associated with genotypes of T393C polymorphism of the GNASl gene. Clin Cancer Res 14:17531758.
23. Midorikawa Y, Yamamoto S, Ishikawa S, Kamimura N1 Igarashi H, Sugimura Ii, Makuuchi M., Aburatani H. 2006. Molecular karyotyping of human hepatocellular carcinoma using single-nucleotide polymorphism arrays. Oncogene 5:5581-5590. (Pubitemid 44344109)
24. Midorikawa Y, Yamamoto S, Tsuji S, Kamimura N, Ishikawa S, Igarashi H, Makuuchi M, Kokudo N, Sugimura H, Aburatani H, 2009. Allelic imbalances and homozygous deletion on 8p23.2 for stepwise progression of hepatocarcinogenesis. Hepatology 49:513-522.
25. Miyoshi H, Kozu T, Shimizu K, Enomoto K, Maseki N, Kaneko Y, Kamada N, Ohki M. 1993. The t(8;21) translocation in acute myeloid leukemia results in production of an AM.L1-MTG8 fusion transcript. EMBOJ .12:271.5-2721. (Pubitemid 23218321)
26. Nakao K, Shibusawa M, Ishihara A, Yoshizawa H, Tsunoda A, Kusa.no M1 Kurose A, Makita T, Sasaki K. 2001. Genetic changes in colorectal carcinoma tumors with liver metastases analyzed by comparative genomic hybridization and DNA ploidy. Cancer 91:721-726.
27. Nakao K, Menta KR, Fridlyand J, Moore DH, Jain AN, Lafuente A, Wiencke JW, Terdiman JP, Waidman FM. 2004. High-resolution analysis of DNA copy number alterations in colorectal cancer by array-based comparative genomic hybridization. Carcinogenesis 25:1.345-1357.
28. Nannya Y, Sanada M, Nakazaki K, Hosoya N, Wang L, Hangaishi A, Kurokawa M, Chiba S, Bailey DK, Kennedy GC, Ogawa S. 2005. A robust algorithm for copy number detection using highdensity oligonucleotide single nucleotide polymorphism genotyping arrays. Cancer Res 65:6071-6079. (Pubitemid 40994391)
29. Pinkel D, Segraves R, Sudar D, Clark S, Poole I, Kowbel D, Collins C, Kuo WL, Chen C, Zhai Y, Ljung BM, Gray JW, Albertson DG. 1998. High resolution analysis of DNA copy number variation, using comparative genomic hybridization to microarrays. Nat Genet 20:207-211.
30. Pollack JR, Perou CM, Aiizadeh AA, Eisen MB, Pergamenschikov A, Williams CF, Jeffrey SS, Botstein D, Brown PO. 1999. Genome-wide analysis of I)NA copy-number changes using cDNA microarrays. Nat Genet 23:41-46. (Pubitemid 29418785)
31. Roepman P, Wessels LF, Kettelarij N, Kemmeren P, Miles AJ, Lijnzaad P, Tilanus MG, Koole R, Hordijk GJ, van der Vliet PC, Reinders MJ, Slootweg PJ, Holstege FC. 2005. An expression profile for diagnosis of lymph node metastases from primary head and neck, squamous cell carcinomas. Nat Genet 37:182-186.
32. Stralen E, Legu.it RJ, Begthel H, Michaux L, Buijs A, Lemmens H, Scheiff JM, Doyen C, Pierre P, Forget F, Cl'evers HC, Bast B. 2009. MafB oncoprotein detected by immunohistochemistry as a highly sensitive and specific marker for the prognostic unfavorable t.(14;20) (q32;ql.2) in multiple myeloma patients. Leukemia 23:801-803.
33. Tananii H, Tsuda H, Okabe S, Iwai T, Sugihara K, Imoto I, Inazawa J. 2005. Involvement of cyclin D3 in. liver metastasis of colorectal cancer, revealed by genome-wide copy-number analysis. Lab Invest 85:1.118-11.29. (Pubitemid 43073985)
34. Thibodeau SN, Bren G, Schaid D. 1993. Microsatellite instability in cancer of the proximal colon. Science 260:816-819. (Pubitemid 23167612)
35. Tsavaris N, Lazaris A, Kosmas C, Gouveris P, Kavantzas N, Kopterides P, Papathomas T, Agrogiannis G, Zorzos H, Kyriakou V, Patsouris E. 2009. Topoisomerase I and !!alpha protein expression in primary colorectal cancer and recurrences following 5fiuorouracil-based adjuvant chemotherapy. Cancer Chemother Pharmacol. 64:391-398.
36. Velho S, Moutinho C, Cimes L, Albuquerque C, Hamelin R, Schmitt F, Carneiro F, Oliveira C, Seruca R. 2008. BRAF, KRAS and P.1K3CA mutations in colorectal serrated, polyps and cancer: primary or secondary genetic events in colorectal carcinogenesis? BMC Cancer 8:255.
37. Vogeístein B, Fearon ER, Hamilton SR, Kern SE, Preisinger AC, Leppert M, Nakamura Y, White R, Smits AM, Bos JL. 1.988. Genetic alterations during colorectal-tumor development. N Engl J Med 319:525-532.
38. Weigelt B, Glas AM, Wessels LF, Witteveen AT, Peterse JL, van't Veer LJ. 2003. Gene expression profiles of primary breast tumors maintained in distant metastases. Proc Natl Acad. Sei USA 100:1.5901-15905.
39. Yagi K, Akagi K, Hayashi H, Nagae G, Tsuji S, Isagawa T, Midorikawa Y, Nishimura Y, Sakamoto H, Seto Y, Aburatani H, Kaneda A. 2010. Three DNA methylation epigenotypes in human colorectal, cancer. Clin Cancer Res 1.6:21-33.
40. Zhao X, Li C, Paez JG, Chin K, Janne PA, Chen TH, Girard. L Minna J, Christiani D, Leo C, Gray JW, Sellers WR, Meyerson M. 2004. An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays. Cancer Res 64:3060-3071.