The KaiA protein of the cyanobacterial circadian oscillator is modulated by a redox-active cofactor

Proceedings of the National Academy of Sciences of the United States of America

Volumn 107, Issue 13, 2010, Pages 5804-5809

  Wood, Thammajun L ^a   Bridwell Rabb, Jennifer ^a   Kim, Yong Ick ^b   Gao, Tiyu ^a   Chang, Yong Gang ^c   LiWang, Andy ^c   Barondeau, David P ^a   Golden, Susan S ^a,b  

^a TEXAS A AND M UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Biological rhythms; DBMIB; Environmental signals; Pseudoreceiver; Quinone

Indexed keywords

2,5 DIBROMO 6 ISOPROPYL 3 METHYLBENZOQUINONE; BACTERIAL PROTEIN; KAIA PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; CIRCADIAN RHYTHM; CONTROLLED STUDY; CYANOBACTERIUM; ENVIRONMENTAL FACTOR; IN VITRO STUDY; IN VIVO STUDY; MODULATION; NONHUMAN; OSCILLATION; OXIDATION; OXIDATION REDUCTION REACTION; PRIORITY JOURNAL; PROTEIN PHOSPHORYLATION; PROTEIN STABILITY;

BACTERIAL PROTEINS; BINDING SITES; CIRCADIAN RHYTHM; CIRCADIAN RHYTHM SIGNALING PEPTIDES AND PROTEINS; DIBROMOTHYMOQUINONE; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; OXIDATION-REDUCTION; PHOSPHORYLATION; PROTEIN KINASES; PROTEIN MULTIMERIZATION; PROTEIN STABILITY; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT PROTEINS; SIGNAL TRANSDUCTION; SYNECHOCOCCUS;

CYANOBACTERIA; KAIA; SYNECHOCOCCUS ELONGATUS; SYNECHOCOCCUS ELONGATUS PCC 6301;

EID: 77950528207     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0910141107     Document Type: Article

References (37)

1. Dunlap JC, Loros JJ, DeCoursey PJ (2004) Chronobiology: Biological Timekeeping (Sinauer Associates, Inc., Sunderland, MA).
2. McClung CR (2007) The cyanobacterial circadian clock is based on the intrinsic ATPase activity of KaiC. Proc Natl Acad Sci USA 104:16727-16728. (Pubitemid 350210933)
3. Nakajima M, et al. (2005) Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro. Science 308:414-415. (Pubitemid 40530079)
4. Xu Y, Mori T, Johnson CH (2003) Cyanobacterial circadian clockwork: roles of KaiA, KaiB and the kaiBC promoter in regulating KaiC. EMBO J 22:2117-2126.
5. Nishiwaki T, Iwasaki H, Ishiura M, Kondo T (2000) Nucleotide binding and autophosphorylation of the clock protein KaiC as a circadian timing process of cyanobacteria. Proc Natl Acad Sci USA 97:495-499. (Pubitemid 30055859)
6. Terauchi K, et al. (2007) ATPase activity of KaiC determines the basic timing for circadian clock of cyanobacteria. Proc Natl Acad Sci USA 104:16377-16381. (Pubitemid 350099412)
7. Iwasaki H, Nishiwaki T, Kitayama Y, NakajimaM, Kondo T (2002) KaiA-stimulated KaiC phosphorylation in circadian timing loops in cyanobacteria. Proc Natl Acad Sci USA 99:15788-15793. (Pubitemid 35404008)
8. Williams SB, Vakonakis I, Golden SS, LiWang AC (2002) Structure and function from the circadian clock protein KaiA of Synechococcus elongatus: A potential clock input mechanism. Proc Natl Acad Sci USA 99:15357-15362. (Pubitemid 35403939)
9. Kitayama Y, Iwasaki H, Nishiwaki T, Kondo T (2003) KaiB functions as an attenuator of KaiC phosphorylation in the cyanobacterial circadian clock system. EMBO J 22:2127-2134. (Pubitemid 36565537)
10. Nishiwaki T, et al. (2007) A sequential program of dual phosphorylation of KaiC as a basis for circadian rhythm in cyanobacteria. EMBO J 26:4029-4037. (Pubitemid 47367500)
11. Rust MJ, Markson JS, Lane WS, Fisher DS, O'Shea EK (2007) Ordered phosphorylation governs oscillation of a three-protein circadian clock. Science 318:809-812.
12. Vakonakis I, Klewer DA, Williams SB, Golden SS, LiWang AC (2004) Structure of the N-terminal domain of the circadian clock-associated histidine kinase SasA. J Mol Biol 342:9-17. (Pubitemid 39094501)
13. Iwasaki H, et al. (2000) A KaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria. Cell 101:223-233. (Pubitemid 32004749)
14. Mackey SR, Golden SS (2007) Winding up the cyanobacterial circadian clock. Trends Microbiol 15:381-388.
15. Smith RM, Williams SB (2006) Circadian rhythms in gene transcription imparted by chromosome compaction in the cyanobacterium Synechococcus elongatus. Proc Natl Acad Sci USA 103:8564-8569.
16. Katayama M, Kondo T, Xiong J, Golden SS (2003) LdpA encodes an iron-sulfur protein involved in light-dependent modulation of the circadian period in the cyanobacterium Synechococcus elongatusPCC 7942. J Bacteriol 185:1415-1422. (Pubitemid 36176875)
17. Ivleva NB, Bramlett MR, Lindahl PA, Golden SS (2005) LdpA: A component of the circadian clock senses redox state of the cell. EMBO J 24:1202-1210.
18. Schmitz O, Katayama M, Williams SB, Kondo T, Golden SS (2000) CikA, a bacteriophytochrome that resets the cyanobacterial circadian clock. Science 289:765-768. (Pubitemid 30650194)
19. Zhang X, Dong G, Golden SS (2006) The pseudo-receiver domain of CikA regulates the cyanobacterial circadian input pathway. Mol Microbiol 60:658-668.
20. Ivleva NB, Gao T, LiWang AC, Golden SS (2006) Quinone sensing by the circadian input kinase of the cyanobacterial circadian clock. Proc Natl Acad Sci USA 103:17468-17473.
21. Trebst A (1980) Inhibitors in electron flow: Tools for the functional and structural localization of carriers and energy conservation sites. Methods Enzymol 69:675-715.
22. Gao T, Zhang X, Ivleva NB, Golden SS, LiWang A (2007) NMR structure of the pseudo-receiver domain of CikA. Protein Sci 16:465-475. (Pubitemid 46327557)
23. Prince RC, Linkletter SJG, Dutton PL (1981) The thermodynamic properties of some commonly used oxidation reduction mediators inhibitors and dyes as determined by polarography. Biochimica et Biophysica Acta 635:132-148.
24. Stidham MA, Siedow JN (1983) Photochemical reactions of dibromothymoquinone structure and inhibitory properties of the photoproduct. Photochem Photobiol 38:537-540.
25. Baker MD, Wolanin PM, Stock JB (2006) Signal transduction in bacterial chemotaxis. Bioessays 28:9-22.
26. Kim Y-I, Dong G, Carruthers CW, Jr, Golden SS, LiWang A (2008) The day/night switch in KaiC, a central oscillator component of the circadian clock of cyanobacteria. Proc Natl Acad Sci USA 105:12825-12830.
27. Georgellis D, Kwon O, Lin EC (2001) Quinones as the redox signal for the Arc two-component system of bacteria. Science 292:2314-2316. (Pubitemid 32568050)
28. Swem LR, Gong X, Yu CA, Bauer CE (2006) Identification of a ubiquinone-binding site that affects autophosphorylation of the sensor kinase RegB. J Biol Chem 281:6768-6775. (Pubitemid 43847613)
29. Bock A, Gross R (2002) The unorthodox histidine kinases BvgS and EvgS are responsive to the oxidation status of a quinone electron carrier. Eur J Biochem 269:3479-3484.
30. Yan J, Kurisu G, Cramer WA (2006) Intraprotein transfer of the quinone analogue inhibitor 2,5-dibromo-3-methyl-6-isopropyl-p-benzoquinone in the cytochrome b6f complex. Proc Natl Acad Sci USA 103:69-74. (Pubitemid 43076106)
31. Law A, Thomas G, Threlfall DR (1973) 5′-Monohydroxyphylloquinone from Anacystis and Euglena. Phytochemistry 12:1999-2004.
32. Bustos SA, Golden SS (1991) Expression of the psbDII gene in Synechococcus sp. strain PCC 7942 requires sequences downstream of the transcription start site. J Bacteriol 173:7525-7533.
33. Mutsuda M, Michel KP, Zhang X, Montgomery BL, Golden SS (2003) Biochemical properties of CikA, an unusual phytochrome-like histidine protein kinase that resets the circadian clock in Synechococcus elongatusPCC 7942. J Biol Chem 278:19102-19110. (Pubitemid 36799298)
34. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY).
35. Simkovic M, Frerman FE (2004) Alternative quinone substrates and inhibitors of human electron-transfer flavoprotein-ubiquinone oxidoreductase. Biochem J 378(Pt 2):633-640. (Pubitemid 38367253)
36. Ivleva NB, Golden SS (2007) Methods in Molecular Biology (Humana Press, Totowa, NJ).
37. Walker JM (1994) Methods in Molecular Biology (Humana Press, Totowa, NJ).