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Volumn 11, Issue 1, 2010, Pages

Comparative genomics of metabolic networks of free-living and parasitic eukaryotes

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; NICOTINAMIDE ADENINE DINUCLEOTIDE;

EID: 77950407837     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-11-217     Document Type: Article
Times cited : (10)

References (44)
  • 1
    • 0024342966 scopus 로고
    • Novel biochemical pathways in parasitic protozoa
    • Fairlamb AH. Novel biochemical pathways in parasitic protozoa. Parasitology 1989, 99:93-112.
    • (1989) Parasitology , vol.99 , pp. 93-112
    • Fairlamb, A.H.1
  • 2
    • 0023736379 scopus 로고
    • Purine and pyrimidine metabolism in parasitic protozoa
    • Hassan HF, Coombs GH. Purine and pyrimidine metabolism in parasitic protozoa. FEMS Microbiol Rev 1988, 4:47-83.
    • (1988) FEMS Microbiol Rev , vol.4 , pp. 47-83
    • Hassan, H.F.1    Coombs, G.H.2
  • 3
    • 23944513862 scopus 로고    scopus 로고
    • Purine and pyrimidine transport in pathogenic protozoa: from biology to therapy
    • 10.1016/j.femsre.2005.03.004, 16040150
    • de Koning HP, Bridges D, Burchmore RJ. Purine and pyrimidine transport in pathogenic protozoa: from biology to therapy. FEMS Microbiol Rev 2005, 29:987-1020. 10.1016/j.femsre.2005.03.004, 16040150.
    • (2005) FEMS Microbiol Rev , vol.29 , pp. 987-1020
    • de Koning, H.P.1    Bridges, D.2    Burchmore, R.J.3
  • 4
    • 0037347791 scopus 로고    scopus 로고
    • Molecular biology of the amitochondriate parasites, Giardia intestinalis, Entamoeba histolytica and Trichomonas vaginalis
    • 10.1016/S0020-7519(02)00267-9, 12670510
    • Vanacova S, Liston DR, Tachezy J, Johnson PJ. Molecular biology of the amitochondriate parasites, Giardia intestinalis, Entamoeba histolytica and Trichomonas vaginalis. Int J Parasitol 2003, 33:235-255. 10.1016/S0020-7519(02)00267-9, 12670510.
    • (2003) Int J Parasitol , vol.33 , pp. 235-255
    • Vanacova, S.1    Liston, D.R.2    Tachezy, J.3    Johnson, P.J.4
  • 5
    • 27844449025 scopus 로고    scopus 로고
    • The extraordinary mitochondrion and unusual citric acid cycle in Trypanosoma brucei
    • 10.1042/BST20050967, 16246022
    • van Hellemond JJ, Opperdoes FR, Tielens AG. The extraordinary mitochondrion and unusual citric acid cycle in Trypanosoma brucei. Biochem Soc Trans 2005, 33:967-971. 10.1042/BST20050967, 16246022.
    • (2005) Biochem Soc Trans , vol.33 , pp. 967-971
    • van Hellemond, J.J.1    Opperdoes, F.R.2    Tielens, A.G.3
  • 6
    • 33847398001 scopus 로고    scopus 로고
    • Specific role of mitochondrial electron transport in blood-stage Plasmodium falciparum
    • 10.1038/nature05572, 17330044
    • Painter HJ, Morrisey JM, Mather MW, Vaidya AB. Specific role of mitochondrial electron transport in blood-stage Plasmodium falciparum. Nature 2007, 446:88-91. 10.1038/nature05572, 17330044.
    • (2007) Nature , vol.446 , pp. 88-91
    • Painter, H.J.1    Morrisey, J.M.2    Mather, M.W.3    Vaidya, A.B.4
  • 10
    • 33847132229 scopus 로고    scopus 로고
    • Chemotherapeutic strategies against Trypanosoma brucei: Drug targets vs. drug targeting
    • Lüscher A, de Koning HP, Mäser P. Chemotherapeutic strategies against Trypanosoma brucei: Drug targets vs. drug targeting. Current Drug Targets 2006, 13:555-567.
    • (2006) Current Drug Targets , vol.13 , pp. 555-567
    • Lüscher, A.1    de Koning, H.P.2    Mäser, P.3
  • 11
    • 0032822923 scopus 로고    scopus 로고
    • Metabolism and selective toxicity of 6-nitrobenzylthioinosine in Toxoplasma gondii
    • 89497, 10508021
    • el Kouni MH, Guarcello V, Al Safarjalani ON, Naguib FN. Metabolism and selective toxicity of 6-nitrobenzylthioinosine in Toxoplasma gondii. Antimicrob Agents Chemother 1999, 43:2437-2443. 89497, 10508021.
    • (1999) Antimicrob Agents Chemother , vol.43 , pp. 2437-2443
    • el Kouni, M.H.1    Guarcello, V.2    Al Safarjalani, O.N.3    Naguib, F.N.4
  • 12
    • 77952288096 scopus 로고    scopus 로고
    • http://www.expasy.ch/tools/pathways/
  • 13
  • 14
    • 0034609791 scopus 로고    scopus 로고
    • The large-scale organization of metabolic networks
    • 10.1038/35036627, 11034217
    • Jeong H, Tombor B, Albert R, Oltvai ZN, Barabasi AL. The large-scale organization of metabolic networks. Nature 2000, 407:651-654. 10.1038/35036627, 11034217.
    • (2000) Nature , vol.407 , pp. 651-654
    • Jeong, H.1    Tombor, B.2    Albert, R.3    Oltvai, Z.N.4    Barabasi, A.L.5
  • 15
    • 0037920232 scopus 로고    scopus 로고
    • Linked - The New Science of Networks
    • Cambridge, MA: Perseus Publishing
    • Barabasi AL. Linked - The New Science of Networks. 2002, Cambridge, MA: Perseus Publishing.
    • (2002)
    • Barabasi, A.L.1
  • 16
    • 33745075009 scopus 로고    scopus 로고
    • Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation
    • 10.1186/1471-2105-7-67, 1475643, 16478540
    • Forst CV, Flamm C, Hofacker IL, Stadler PF. Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation. BMC Bioinformatics 2006, 7:67. 10.1186/1471-2105-7-67, 1475643, 16478540.
    • (2006) BMC Bioinformatics , vol.7 , pp. 67
    • Forst, C.V.1    Flamm, C.2    Hofacker, I.L.3    Stadler, P.F.4
  • 17
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • 10.1126/science.286.5439.509, 10521342
    • Barabasi AL, Albert R. Emergence of scaling in random networks. Science 1999, 286:509-512. 10.1126/science.286.5439.509, 10521342.
    • (1999) Science , vol.286 , pp. 509-512
    • Barabasi, A.L.1    Albert, R.2
  • 19
    • 17844405878 scopus 로고    scopus 로고
    • Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation
    • 10.1186/1471-2180-5-8, 1079855, 15752426
    • Becker SA, Palsson BO. Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation. BMC Microbiol 2005, 5:8. 10.1186/1471-2180-5-8, 1079855, 15752426.
    • (2005) BMC Microbiol , vol.5 , pp. 8
    • Becker, S.A.1    Palsson, B.O.2
  • 20
    • 34347332311 scopus 로고    scopus 로고
    • A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
    • 10.1038/msb4100155, 1911197, 17593909
    • Feist AM, Henry CS, Reed JL, Krummenacker M, Joyce AR, Karp PD, Broadbelt LJ, Hatzimanikatis V, Palsson BO. A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Mol Syst Biol 2007, 3:121. 10.1038/msb4100155, 1911197, 17593909.
    • (2007) Mol Syst Biol , vol.3 , pp. 121
    • Feist, A.M.1    Henry, C.S.2    Reed, J.L.3    Krummenacker, M.4    Joyce, A.R.5    Karp, P.D.6    Broadbelt, L.J.7    Hatzimanikatis, V.8    Palsson, B.O.9
  • 21
    • 44349157798 scopus 로고    scopus 로고
    • The evolution of modularity in bacterial metabolic networks
    • 10.1073/pnas.0712149105, 2383979, 18460604
    • Kreimer A, Borenstein E, Gophna U, Ruppin E. The evolution of modularity in bacterial metabolic networks. Proc Natl Acad Sci USA 2008, 105:6976-6981. 10.1073/pnas.0712149105, 2383979, 18460604.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 6976-6981
    • Kreimer, A.1    Borenstein, E.2    Gophna, U.3    Ruppin, E.4
  • 22
    • 55749087868 scopus 로고    scopus 로고
    • Large-scale reconstruction and phylogenetic analysis of metabolic environments
    • 10.1073/pnas.0806162105, 2567166, 18787117
    • Borenstein E, Kupiec M, Feldman MW, Ruppin E. Large-scale reconstruction and phylogenetic analysis of metabolic environments. Proc Natl Acad Sci USA 2008, 105:14482-14487. 10.1073/pnas.0806162105, 2567166, 18787117.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 14482-14487
    • Borenstein, E.1    Kupiec, M.2    Feldman, M.W.3    Ruppin, E.4
  • 23
    • 33645343816 scopus 로고    scopus 로고
    • Host-pathogen systems biology
    • 10.1016/S1359-6446(05)03735-9, 16580599
    • Forst CV. Host-pathogen systems biology. Drug Discov Today 2006, 11:220-227. 10.1016/S1359-6446(05)03735-9, 16580599.
    • (2006) Drug Discov Today , vol.11 , pp. 220-227
    • Forst, C.V.1
  • 24
    • 59649085782 scopus 로고    scopus 로고
    • Topological signatures of species interactions in metabolic networks
    • 10.1089/cmb.2008.06TT, 19178139
    • Borenstein E, Feldman MW. Topological signatures of species interactions in metabolic networks. J Comput Biol 2009, 16:191-200. 10.1089/cmb.2008.06TT, 19178139.
    • (2009) J Comput Biol , vol.16 , pp. 191-200
    • Borenstein, E.1    Feldman, M.W.2
  • 25
    • 0344328817 scopus 로고    scopus 로고
    • An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
    • 10.1186/gb-2003-4-9-r54, 193654, 12952533
    • Reed JL, Vo TD, Schilling CH, Palsson BO. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Genome Biol 2003, 4:R54. 10.1186/gb-2003-4-9-r54, 193654, 12952533.
    • (2003) Genome Biol , vol.4
    • Reed, J.L.1    Vo, T.D.2    Schilling, C.H.3    Palsson, B.O.4
  • 26
    • 33645460106 scopus 로고    scopus 로고
    • Chance and necessity in the evolution of minimal metabolic networks
    • 10.1038/nature04568, 16572170
    • Pal C, Papp B, Lercher MJ, Csermely P, Oliver SG, Hurst LD. Chance and necessity in the evolution of minimal metabolic networks. Nature 2006, 440:667-670. 10.1038/nature04568, 16572170.
    • (2006) Nature , vol.440 , pp. 667-670
    • Pal, C.1    Papp, B.2    Lercher, M.J.3    Csermely, P.4    Oliver, S.G.5    Hurst, L.D.6
  • 27
    • 0037316239 scopus 로고    scopus 로고
    • Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
    • 10.1093/bioinformatics/19.2.270, 12538249
    • Ma H, Zeng AP. Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms. Bioinformatics 2003, 19:270-277. 10.1093/bioinformatics/19.2.270, 12538249.
    • (2003) Bioinformatics , vol.19 , pp. 270-277
    • Ma, H.1    Zeng, A.P.2
  • 28
    • 14844349363 scopus 로고    scopus 로고
    • MetaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella
    • 10.1093/nar/gki285, 552966, 15745999
    • Pinney JW, Shirley MW, McConkey GA, Westhead DR. metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella. Nucleic Acids Res 2005, 33:1399-1409. 10.1093/nar/gki285, 552966, 15745999.
    • (2005) Nucleic Acids Res , vol.33 , pp. 1399-1409
    • Pinney, J.W.1    Shirley, M.W.2    McConkey, G.A.3    Westhead, D.R.4
  • 29
    • 35649002488 scopus 로고    scopus 로고
    • Metabolic reconstruction and analysis for parasite genomes
    • 10.1016/j.pt.2007.08.013, 17950669
    • Pinney JW, Papp B, Hyland C, Wambua L, Westhead DR, McConkey GA. Metabolic reconstruction and analysis for parasite genomes. Trends Parasitol 2007, 23:548-554. 10.1016/j.pt.2007.08.013, 17950669.
    • (2007) Trends Parasitol , vol.23 , pp. 548-554
    • Pinney, J.W.1    Papp, B.2    Hyland, C.3    Wambua, L.4    Westhead, D.R.5    McConkey, G.A.6
  • 30
    • 36549002108 scopus 로고    scopus 로고
    • Gene annotation and pathway mapping in KEGG
    • full_text, 18025687
    • Aoki-Kinoshita KF, Kanehisa M. Gene annotation and pathway mapping in KEGG. Methods Mol Biol 2007, 396:71-91. full_text, 18025687.
    • (2007) Methods Mol Biol , vol.396 , pp. 71-91
    • Aoki-Kinoshita, K.F.1    Kanehisa, M.2
  • 31
    • 0345863935 scopus 로고    scopus 로고
    • The KEGG resource for deciphering the genome
    • 10.1093/nar/gkh063, 308797, 14681412
    • Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M. The KEGG resource for deciphering the genome. Nucleic Acids Res 2004, 32:D277-280. 10.1093/nar/gkh063, 308797, 14681412.
    • (2004) Nucleic Acids Res , vol.32
    • Kanehisa, M.1    Goto, S.2    Kawashima, S.3    Okuno, Y.4    Hattori, M.5
  • 32
    • 1242319556 scopus 로고    scopus 로고
    • The metabolic world of Escherichia coli is not small
    • 10.1073/pnas.0306458101, 341771, 14757824
    • Arita M. The metabolic world of Escherichia coli is not small. Proc Natl Acad Sci USA 2004, 101:1543-1547. 10.1073/pnas.0306458101, 341771, 14757824.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 1543-1547
    • Arita, M.1
  • 33
    • 41149126422 scopus 로고    scopus 로고
    • Metabolome based reaction graphs of M. tuberculosis and M. leprae: a comparative network analysis
    • 10.1371/journal.pone.0000881, 1964534, 17849010
    • Verkhedkar KD, Raman K, Chandra NR, Vishveshwara S. Metabolome based reaction graphs of M. tuberculosis and M. leprae: a comparative network analysis. PLoS ONE 2007, 2:e881. 10.1371/journal.pone.0000881, 1964534, 17849010.
    • (2007) PLoS ONE , vol.2
    • Verkhedkar, K.D.1    Raman, K.2    Chandra, N.R.3    Vishveshwara, S.4
  • 36
    • 62849121535 scopus 로고    scopus 로고
    • A unique dual activity amino acid hydroxylase in Toxoplasma gondii
    • 10.1371/journal.pone.0004801, 2653193, 19277211
    • Gaskell EA, Smith JE, Pinney JW, Westhead DR, McConkey GA. A unique dual activity amino acid hydroxylase in Toxoplasma gondii. PLoS One 2009, 4:e4801. 10.1371/journal.pone.0004801, 2653193, 19277211.
    • (2009) PLoS One , vol.4
    • Gaskell, E.A.1    Smith, J.E.2    Pinney, J.W.3    Westhead, D.R.4    McConkey, G.A.5
  • 37
    • 0016708529 scopus 로고
    • Utilization of amino acids by Trypanosoma brucei in culture: L-threonine as a precursor for acetate
    • 10.1017/S0031182000046758, 1187188
    • Cross GA, Klein RA, Linstead DJ. Utilization of amino acids by Trypanosoma brucei in culture: L-threonine as a precursor for acetate. Parasitology 1975, 71:311-326. 10.1017/S0031182000046758, 1187188.
    • (1975) Parasitology , vol.71 , pp. 311-326
    • Cross, G.A.1    Klein, R.A.2    Linstead, D.J.3
  • 38
    • 0017110813 scopus 로고
    • Threonine as a perferred source of 2-carbon units for lipid synthesis in Trypanosoma brucei
    • Klein RA, Linstead DJ. Threonine as a perferred source of 2-carbon units for lipid synthesis in Trypanosoma brucei. Biochem Soc Trans 1976, 4:48-50.
    • (1976) Biochem Soc Trans , vol.4 , pp. 48-50
    • Klein, R.A.1    Linstead, D.J.2
  • 41
    • 77952288304 scopus 로고    scopus 로고
    • Literature Curation
    • Literature Curation. , ftp://genome-ftp.stanford.edu/pub/yeast/data_download/literature_curation/
  • 42
    • 84870422128 scopus 로고    scopus 로고
    • Kyoto Encyclopedia of Genes and Genomes
    • Kyoto Encyclopedia of Genes and Genomes. , http://www.genome.jp/kegg
  • 43
    • 77952288137 scopus 로고    scopus 로고
    • BioLayout Express 3D
    • BioLayout Express 3D. , http://www.biolayout.org/
  • 44
    • 41349101546 scopus 로고    scopus 로고
    • GraphCrunch: a tool for large network analyses
    • 10.1186/1471-2105-9-70, 2275247, 18230190
    • Milenkovic T, Lai J, Przulj N. GraphCrunch: a tool for large network analyses. BMC Bioinformatics 2008, 9:70. 10.1186/1471-2105-9-70, 2275247, 18230190.
    • (2008) BMC Bioinformatics , vol.9 , pp. 70
    • Milenkovic, T.1    Lai, J.2    Przulj, N.3


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