Gluconobacter wancherniae sp. nov., an acetic acid bacterium from Thai isolates in the α-Proteobacteria

Journal of General and Applied Microbiology

Volumn 56, Issue 1, 2010, Pages 67-73

  Yukphan, Pattaraporn ^a   Malimas, Taweesak ^a   Lundaa, Tserennyam ^a,b   Muramatsu, Yuki ^c   Takahashi, Mai ^c   Kaneyasu, Mika ^c   Tanasupawat, Somboon ^d   Nakagawa, Yasuyoshi ^c   Suzuki, Ken Ichiro ^c   Tanticharoen, Morakot ^a   Yamada, Yuzo ^a,e  

^a NATIONAL SCIENCE AND TECHNOLOGY DEVELOPMENT AGENCY   (Thailand)

^b MONGOLIAN UNIVERSITY OF LIFE SCIENCES   (Mongolia)

^c NATIONAL INSTITUTE OF TECHNOLOGY AND EVALUATION   (Japan)

^d CHULALONGKORN UNIVERSITY   (Thailand)

^e JAPAN INTERNATIONAL COOPERATION AGENCY   (Japan)

Author keywords

16s 23S rRNA gene its sequences; Acetic acid bacteria; Gluconobacter wancherniae sp. nov.; Restriction analysis; proteobacteria

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; CYTOSINE; GUANINE; RNA 16S;

ALPHAPROTEOBACTERIA; ARTICLE; BACTERIUM ISOLATE; CONTROLLED STUDY; DNA CONTENT; GLUCONOBACTER; GLUCONOBACTER WANCHERNIAE; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; RNA SEQUENCE; THAILAND;

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); GLUCONOBACTER;

EID: 77950385245     PISSN: 00221260     EISSN: 13498037     Source Type: Journal    
DOI: 10.2323/jgam.56.67     Document Type: Article

References (37)

1. Asai, T., Iizuka, H., and Komagata, K. (1964) The flagellation and taxonomy of genera Gluconobacter and Acetobacter with reference to the existence of intermediate strains. J. Gen. Appl. Microbiol., 10, 95-126.
2. Ezaki, T., Hashimoto, Y., and Yabuuchi, E. (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol., 39, 224-229.
3. Ezaki, T., Yamamoto, N., Ninomiya, K., Suzuki, S., and Yabuuchi, E. (1983) Transfer of Peptococcus indolicus, Peptococcus asaccharolyticus, Peptococcus prevotii, and Peptococcus magnus to the genus Peptostreptococcus and proposal of Peptostreptococcus tetradius sp. nov. Int. J. Syst. Bacteriol., 33, 683-698.
4. Felsenstein, J. (1981) Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol., 17, 368-376.
5. Felsenstein, J. (1983) Parsimony in systematics: Biological and statistical issues. Annu. Rev. Ecol. Syst., 14, 313-333.
6. Felsenstein, J. (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783-791.
7. Gosselé, F., Swings, J., Kersters, K., and De Ley, J. (1983) Numerical analysis of phenotypic features and protein gel electrophoregrams of Gluconobacter Asai 1935 emend. mut. char. Asai, Iizuka, and Komagata 1964. Int. J. Syst. Bacteriol., 33, 65-81.
8. Katsura, K., Yamada, Y., Uchimura, T., and Komagata, K. (2002) Gluconobacter asaii Mason and Claus 1989 is a junior subjective synonym of Gluconobacter cerinus Yamada and Akita 1984. Int. J. Syst. Evol. Microbiol., 52, 1635-1640.
9. Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol., 16, 111-120.
10. Malimas, T., Yukphan, P., Takahashi, M., Kaneyasu, M., Potacharoen, W., Tanasupawat, S., Nakagawa, Y., Tanticharoen, M., and Yamada, Y. (2007) Gluconobacter kondonii sp. nov., an acetic acid bacterium in the α-Proteobacteria. J. Gen. Appl. Microbiol., 53, 301-307.
11. Malimas, T., Yukphan, P., Takahashi, M., Muramatsu, Y., Kaneyasu, M., Potacharoen, W., Tanasupawat, S., Nakagawa, Y., Tanticharoen, M., and Yamada, Y. (2008a) Gluconobacter roseus (ex Asai 1935) sp. nov., nom. rev., a pink-colored acetic acid bacterium in the Alphaproteobacteria. J. Gen. Appl. Microbiol., 54, 119-125.
12. Malimas, T., Yukphan, P., Takahashi, M., Muramatsu, Y., Kaneyasu, M., Potacharoen, W., Tanasupawat, S., Nakagawa, Y., Tanticharoen, M., and Yamada, Y. (2008b) Gluconobacter sphaericus (Ameyama 1975) comb. nov., a brown pigment- producing acetic acid bacterium in the Alphaproteobacteria. J. Gen. Appl. Microbiol., 54, 211-220.
13. Malimas, T., Yukphan, P., Takahashi, M., Muramatsu, Y., Kaneyasu, M., Potacharoen, W., Tanasupawat, S., Nakagawa, Y., Tanticharoen, M., and Yamada, Y. (2009a) Gluconobacter japonicus sp. nov., an acetic acid bacterium in the Alphaproteobacteria. Int. J. Syst. Evol. Microbiol., 59, 466-471.
14. Malimas, T., Yukphan, P., Takahashi, T., Lundaa, M., Muramatsu, Y., Takahashi, M., Kaneyasu, M., Potacharoen, W., Tanasupawat, S., Nakagawa, Y., Suzuki, K., Tanticharoen, M., and Yamada, Y. (2009b) Gluconobacter kanchanaburiensis sp. nov., a brown pigment-producing acetic acid bacterium for Thai isolates in the Alphaproteobacteria. J. Gen. Appl. Microbiol., 55, 247-254.
15. Marmur, J. (1961) A procedure for isolation of deoxyribonucleic acid from microorganisms. J. Mol. Biol., 3, 208-218.
16. Mason, L. M. and Claus, G. W. (1989) Phenotypic characteristics correlated with deoxyribonucleic acid sequence similarities for three species of Gluconobacter: G. oxydans (Henneberg 1897) De Ley 1961, G. frateurii sp. nov., and G. asaii sp. nov. Int. J. Syst. Bacteriol., 39, 174-184.
17. Muramatsu, Y., Yukphan, P., Takahashi, M., Kaneyasu, M., Malimas, T., Potacharoen, W., Yamada, Y., Nakagawa, Y., Tanticharoen, M., and Suzuki, K. (2009) 16S rRNA gene sequences analysis of acetic acid bacteria isolated from Thailand. Microbiol. Cult. Coll., 25, 13-20.
18. Saito, H. and Miura, K. (1963) Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim. Biophys. Acta, 72, 619-629.
19. Saitou, N. and Nei, M. (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
20. Skerman, V. B. D., McGowan, V., and Sneath, P. H. A. (1980) Approved lists of bacterial names. Int. J. Syst. Bacteriol., 30, 225-420.
21. Tamaoka, J. and Komagata, K. (1984) Determination of DNA base composition by reversed-phase high performance liquid chromatography. FEMS Microbiol. Lett., 25, 125-128.
22. Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007) MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol., 24, 1596-1599.
23. Tanaka, M., Murakami, S., Shinke, R., and Aoki, K. (1999) Reclassification of the strains with low G+C contents of DNA belonging to the genus Gluconobacter Asai 1935 (Acetobacteraceae). Biosci. Biotechnol. Biochem., 63, 989-992.
24. Tanasupawat, S., Thawai, C., Yukphan, P., Moonmangmee, D., Itoh, T., Adachi, O., and Yamada, Y. (2004) Gluconobacter thailandicus sp. nov., an acetic acid bacterium in the α-Proteobacteria. J. Gen. Appl. Microbiol., 50, 159-167.
25. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997) The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 25, 4876-4882.
26. Trçek, J. and Teuber, M. (2002) Genetic and restriction analysis of the 16S-23S rDNA internal transcribed spacer regions of the acetic acid bacteria. FEMS Microbiol. Lett., 208, 69-75.
27. Verlander, C. P. (1992) Detection of horseradish peroxidase by colorimetry. In Nonisotopic DNA Probe Techniques, ed. by Kricka, L. J., Academic Press, New York, pp.185-201.
28. Yamada, Y., Aida, K., and Uemura, T. (1969) Enzymatic studies on the oxidation of sugar and sugar alcohol. V. Ubiquinone of acetic acid bacteria and its relation to classification of Gluconobacter and Acetobacter, especially of the so-called intermediate strains. J. Gen. Appl. Microbiol., 15, 186-196.
29. Yamada, Y. and Akita, M. (1984) An electrophoretic comparison of enzymes in strains of Gluconobacter species. J. Gen. Appl. Microbiol., 30, 115-126.
30. Yamada, Y., Hosono, R., Lisdiyanti, P., Widyastuti, Y., Saono, S., Uchimura, T., and Komagata, K. (1999) Identification of acetic acid bacteria isolated from Indonesian sources, especially of isolates classified in the genus Gluconobacter. J. Gen. Appl. Microbiol., 45, 23-28.
31. Yamada, Y., Itakura, N., Yamashita, M., and Tahara, Y. (1984) Deoxyribonucleic acid homologies in strains of Gluconobacter species. J. Ferment. Technol., 62, 595-600.
32. Yamada, Y., Katsura, K., Kawasaki, H., Widyastuti, Y., Saono, S., Seki, T., Uchimura, T., and Komagata, K. (2000) Asaia bogorensis gen. nov., sp. nov., an unusual acetic acid bacterium in the α-Proteobacteria. Int. J. Syst. Evol. Microbiol., 50, 823-829.
33. Yamada, Y., Okada, Y., and Kondo, K. (1976) Isolation and characterization of lpolarly flagellated intermediate strainsz in acetic acid bacteria. J. Gen. Appl. Microbiol., 22, 237-245.
34. Yukphan, P., Malimas, T., Takahashi, M., Potacharoen, W., Busabun, T., Tanasupawat, S., Nakagawa, Y., Tanticharoen, M., and Yamada, Y. (2004a) Re-identification of Gluconobacter strains based on the restriction analysis of the 16S-23S rDNA internal transcribed spacer regions. J. Gen. Appl. Microbiol., 50, 189-195.
35. Yukphan, P., Potacharoen, W., Nakagawa, Y., Tanticharoen, M., and Yamada, Y. (2004b) Identification of strains assigned to the genus Gluconobacter Asai 1935 based on the sequence and the restriction analyses of the 16S-23S rDNA internal transcribed spacer regions. J. Gen. Appl. Microbiol., 50, 9-15.
36. Yukphan, P., Potacharoen, W., Tanasupawat, S., Tanticharoen, M., and Yamada, Y. (2004c) Asaia krungthepensis sp. nov., an acetic acid bacterium in the α-Proteobacteria. Int. J. Syst. Evol. Microbiol., 54, 313-316.
37. Yukphan, P., Takahashi, M., Potacharoen, W., Tanasupawat, S., Nakagawa, Y., Tanticharoen, M., and Yamada, Y. (2004d) Gluconobacter albidus (ex Kondo and Ameyama 1958) sp. nov., nom. rev., an acetic acid bacterium in the α-Proteobacteria. J. Gen. Appl. Microbiol., 50, 235-242.