Gluconobacter albidus (ex Kondo and Ameyama 1958) sp. nov., nom. rev., an acetic acid bacterium in the α-Proteobacteria

Journal of General and Applied Microbiology

Volumn 50, Issue 4, 2004, Pages 235-242

  Yukphan, Pattaraporn ^a   Takahashi, Mai ^b   Potacharoen, Wanchern ^a   Tanasupawat, Somboon ^c   Nakagawa, Yasuyoshi ^b   Tanticharoen, Morakot ^a   Yamada, Yuzo ^a,d  

^a NATIONAL SCIENCE AND TECHNOLOGY DEVELOPMENT AGENCY   (Thailand)

^b NATIONAL INSTITUTE OF TECHNOLOGY AND EVALUATION   (Japan)

^c CHULALONGKORN UNIVERSITY   (Thailand)

^d TOKYO UNIVERSITY OF AGRICULTURE   (Japan)

Author keywords

Proteobacteria; 16S rRNA gene sequences; 16S 23S rDNA ITS region sequences; Acetic acid bacteria; BsoBl; Gluconobacter albidus sp. nov., nom. rev.; Gluconobacter oxydans; Mboll; New species; Taxonomy; Tsp509I

Indexed keywords

ACETIC ACID; BACTERIAL DNA;

ALPHAPROTEOBACTERIA; ARTICLE; BACTERIAL GROWTH; CHEMOTAXONOMY; CULTURE MEDIUM; DNA EXTRACTION; DNA ISOLATION; GLUCONOBACTER; GLUCONOBACTER ALBIDUS; GLUCONOBACTER CERINUS; GLUCONOBACTER OXYDANS; GRAM NEGATIVE BACTERIUM; MICROBIAL MORPHOLOGY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; TYPE STRAIN;

ACETIC ACID; ALPHAPROTEOBACTERIA; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; GLUCONOBACTER; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RESTRICTION MAPPING; RNA, RIBOSOMAL, 16S; RNA, RIBOSOMAL, 23S;

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); GLUCONOBACTER; GLUCONOBACTER CERINUS; GLUCONOBACTER OXYDANS; NEGIBACTERIA;

EID: 11044232240     PISSN: 00221260     EISSN: None     Source Type: Journal    
DOI: 10.2323/jgam.50.235     Document Type: Article

References (31)

1. Asai, T., Iizuka, H., and Komagata, K. (1964) The flagellation and taxonomy of genera Gluconobacter and Acetobacter with reference to the existence of intermediate strains. J. Gen. Appl. Microbiol., 10, 95-126.
2. Cleenwerck, I., Vandemeulebroecke, K., Janssens, D., and Swings, J. (2002) Re-examination of the genus Acetobacter, with descriptions of Acetobacter cerevisiae sp. nov. and Acetobacter malorum, sp. nov. Int. J. Syst. Evol. Microbiol., 52, 1551-1558.
3. Ezaki, T., Hashimoto, Y., and Yabuuchi, E. (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol., 39, 224-229.
4. Ezaki, T., Yamamoto, N., Ninomiya, K., Suzuki, S., and Yabuuchi, E. (1983) Transfer of Peptococcus indolicus, Peptococcus asaccharolyticus, Peptococcus prevotii, and Peptococcus magnus to the genus Peptostreptococcus and proposal of Peptostreptococcus tetradius sp. nov. Int. J. Syst. Bacteriol., 33, 683-698.
5. Felsenstein, J. (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783-791.
6. Gosselé, F., Swings, J., Kersters, K., and De Ley, J. (1983) Numerical analysis of phenotypic features and protein gel electrophoregrams of Gluconobacter Asai 1935 emend. mut. char. Asai, Iizuka, and Komagata 1964. Int. J. Syst. Bacteriol., 33 65-81.
7. Katsura, K., Yamada, Y., Uchimura, T., and Komagata, K. (2002) Gluconobacter asaii Mason and Claus 1989 is a junior subjective synonym of Gluconobacter cerinus Yamada and Akita 1994. Int. J. Syst. Evol. Microbiol., 52, 1635-1640.
8. Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol., 16, 111-120.
9. Kondo, K. and Ameyama, M. (1958) Carbohydrate metabolism by Acetobacter species. Part I. Oxidative activity for various carbohydrates. Bull. Agric. Chem. Soc. Jpn., 22, 369-372.
10. Lisdiyanti, P., Kawasaki, H., Seki, T., Yamada, Y., Uchimura, T., and Komagata, K. (2000) Systematic study of the genus Acetobacter with descriptions of Acetobacter indonesiensis sp. nov., Acetobacter tropicalis sp. nov., Acetobacter orleanensis (Henneberg 1906) comb. nov., Acetobacter lovaniensis (Frateur 1950) comb. nov., and Acetobacter estunensis (Carr 1958) comb. nov. J. Gen. Appl. Microbiol., 46, 147-165.
11. Lisdiyanti, P., Kawasaki, H., Seki, T., Yamada, Y., Uchimura, T., and Komagata, K. (2001) Identification of Acetobacter strains isolated from Indonesian sources, and proposals of Acetobacter syzygii sp. nov., Acetobacter cibinongensis sp. nov., and Acetobacter orientalis sp. nov. J. Gen. Appl. Microbiol., 47, 119-131.
12. Marmur, J. (1961) A procedure for isolation of deoxyribonucleic acid from micro-organisms. J. Mol. Biol., 3, 208-218.
13. Mason, L. M. and Claus, G. W. (1989) Phenotypic characteristics correlated with deoxyribonucleic acid sequence similarities for three species of Gluconobacter: G. oxydans (Henneberg 1897) De Ley 1961, G. frateurii sp. nov., and G. asaii sp. nov. Int. J. Syst. Bacteriol., 39, 174-184.
14. Micales, B. K., Johnson, J. L., and Claus, G. W. (1985) Deoxyribonucleic acid homologies among organisms in the genus Gluconobacter. Int. J. Syst. Bacteriol., 35, 79-85.
15. Saito, H. and Miura, K. (1963) Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim. Biophys. Acta, 72, 619-629.
16. Saitou, N. and Nei, M. (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
17. Skerman, V. B. D., McGowan, V., and Sneath, P. H. A. (1980) Approved lists of bacterial names. Int. J. Syst. Bacteriol., 30 225-420.
18. Tamaoka, J. and Komagata, K. (1984) Determination of DNA base composition by reversed-phase high performance liquid chromatography. FEMS Microbiol. Lett., 25, 125-128.
19. Tanaka, M., Murakami, S., Shinke, R., and Aoki, K. (1999) Reclassification of the strains with low G+C contents of DNA belonging to the genus Gluconobacter Asai 1935 (Acetobacteraceae). Biosci. Biotechnol. Biochem., 63, 989-992.
20. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997) The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 25, 4876-4882.
21. Trček, J. and Teuber, M. (2002) Genetic and restriction analysis of the 16S-23S rDNA internal transcribed spacer regions of the acetic acid bacteria. FEMS Microbiol. Lett., 208, 69-75.
22. Verlander, C. P. (1992) Detection of horseradish peroxidase by colorimetry. In Nonisotopic DNA Probe Techniques, ed. by Kricka, L. J., Academic Press, New York, pp. 185-201.
23. Yamada, Y., Aida, K., and Uemura, T. (1969) Enzymatic studies on the oxidation of sugar and sugar alcohol. V. Ubiquinone of acetic acid bacteria and its relation to classification of Gluconobacter and Acetobacter, especially of the so-called intermediate strains. J. Gen. Appl. Microbiol., 15, 186-196.
24. Yamada, Y. and Akita, M. (1984) An electrophoretic comparison of enzymes in strains of Gluconobacter species. J. Gen. Appl. Microbiol., 30, 115-126.
25. Yamada, Y., Hosono, R., Lisdyanti, P., Widyastuti, Y., Saono, S., Uchimura, T., and Komagata, K. (1999) Identification of acetic acid bacteria isolated from Indonesian sources, especially of isolates classified in the genus Gluconobacter. J. Gen. Appl. Microbiol., 45, 23-28.
26. Yamada, Y., Itakura, N., Yamashita, M., and Tahara, Y. (1984) Deoxyribonucleic acid homologies in strains of Gluconobacter species. J. Ferment. Technol., 62, 595-600.
27. Yamada, Y., Katsura, K., Kawasaki, H., Widyastuti, Y., Saono, S., Seki, T., Uchimura, T., and Komagata, K. (2000) Asaia bogorensis gen. nov., sp. nov., an unusual acetic acid bacterium in the α- Proteobacteria. Int. J. Syst. Evol. Microbiol., 50, 823-829.
28. Yamada, Y., Okada, Y., and Kondo, K. (1976) Isolation and characterization of "polarly flagellated intermediate strains" in acetic acid bacteria. J. Gen. Appl. Microbiol., 22, 237-245.
29. Yukphan, P., Malimas, T., Takahashi, M., Potacharoen, W., Busabun, T., Tanasupawat, S., Nakagawa, Y., Tanticharoen, M., and Yamada, Y. (2004a) Re-identification of Gluconobacter strains based on restriction analysis of 16S-23S rDNA internal transcribed spacer regions. J. Gen. Appl. Microbiol., 50, 189-195.
30. Yukphan, P., Potacharoen, W., Nakagawa, Y., Tanticharoen, M., and Yamada, Y. (2004b) Identification of strains assigned to the genus Gluconobacter Asai 1935 based on the sequence and the restriction analyses of the 16S-23S rDNA internal transcribed spacer regions. J. Gen. Appl. Microbiol., 50, 9-15.
31. Yukphan, P., Potacharoen, W., Tanasupawat, S., Tanticharoen, M., and Yamada, Y. (2004c) Asaia krungthepensis sp. nov., an acetic acid bacterium in the α-Proteobacteria. Int. J. Syst. Evol. Microbiol., 54, 313-316.