메뉴 건너뛰기




Volumn 38, Issue 3, 2009, Pages 859-867

Critical amino acids in human DNA polymerases η and κ involved in erroneous incorporation of oxidized nucleotides

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; ALANINE; ARGININE; ASPARAGINE; CYTOSINE; DEOXYGUANOSINE TRIPHOSPHATE; DNA DIRECTED DNA POLYMERASE; DNA DIRECTED DNA POLYMERASE ETA; DNA DIRECTED DNA POLYMERASE KAPPA; GLUTAMINE; GUANINE; HISTIDINE; LYSINE; METHIONINE; PHENYLALANINE; SERINE; TYROSINE; UNCLASSIFIED DRUG; 8 OXODEOXYGUANOSINE TRIPHOSPHATE; 8-OXODEOXYGUANOSINE TRIPHOSPHATE; DEOXYADENOSINE DERIVATIVE; DEOXYGUANOSINE PHOSPHATE; DNA; POLK PROTEIN, HUMAN;

EID: 77950357011     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp1095     Document Type: Article
Times cited : (27)

References (44)
  • 1
    • 85015066476 scopus 로고    scopus 로고
    • DNA damage and repair
    • Friedberg,E.C. (2003) DNA damage and repair. Nature, 421, 436-440.
    • (2003) Nature , vol.421 , pp. 436-440
    • Friedberg, E.C.1
  • 3
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • Lindahl,T. (1993) Instability and decay of the primary structure of DNA. Nature, 362, 709-715.
    • (1993) Nature , vol.362 , pp. 709-715
    • Lindahl, T.1
  • 4
    • 0020508747 scopus 로고
    • Dietary carcinogens and anticarcinogens. Oxygen radicals and degenerative diseases
    • Ames,B.N. (1983) Dietary carcinogens and anticarcinogens. Oxygen radicals and degenerative diseases. Science, 221, 1256-1264.
    • (1983) Science , vol.221 , pp. 1256-1264
    • Ames, B.N.1
  • 5
    • 0028345763 scopus 로고
    • Reactive oxygen species in tumorigenesis
    • Feig,D.I., Reid,T.M. and Loeb,L.A. (1994) Reactive oxygen species in tumorigenesis. Cancer Res., 54, 1890s-1894s.
    • (1994) Cancer Res. , vol.54
    • Feig, D.I.1    Reid, T.M.2    Loeb, L.A.3
  • 6
    • 34147174320 scopus 로고    scopus 로고
    • Significance of error-avoiding mechanisms for oxidative DNA damage in carcinogenesis
    • Tsuzuki,T., Nakatsu,Y. and Nakabeppu,Y. (2007) Significance of error-avoiding mechanisms for oxidative DNA damage in carcinogenesis. Cancer Sci., 98, 465-470.
    • (2007) Cancer Sci , vol.98 , pp. 465-470
    • Tsuzuki, T.1    Nakatsu, Y.2    Nakabeppu, Y.3
  • 8
    • 0028933674 scopus 로고
    • Functional cooperation of MutT MutM and MutY proteins in preventing mutations caused by spontaneous oxidation of guanine nucleotide in
    • Tajiri,T., Maki,H. and Sekiguchi,M. (1995) Functional cooperation of MutT, MutM and MutY proteins in preventing mutations caused by spontaneous oxidation of guanine nucleotide in Escherichia coli. Mutat. Res., 336, 257-267.
    • (1995) Escherichia coli. Mutat. Res. , vol.336 , pp. 257-267
    • Tajiri, T.1    Maki, H.2    Sekiguchi, M.3
  • 9
    • 0026513966 scopus 로고
    • MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis
    • Maki,H. and Sekiguchi,M. (1992) MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis. Nature, 355, 273-275.
    • (1992) Nature , vol.355 , pp. 273-275
    • Maki, H.1    Sekiguchi, M.2
  • 10
    • 0013882288 scopus 로고
    • The unusual mutagenic specificity of an E. coli mutator gene
    • Yanofsky,C., Cox,E.C. and Horn,V. (1966) The unusual mutagenic specificity of an E. coli mutator gene. Proc. Natl Acad. Sci. USA, 55, 274-281.
    • (1966) Proc. Natl Acad. Sci. USA , vol.55 , pp. 274-281
    • Yanofsky, C.1    Cox, E.C.2    Horn, V.3
  • 11
    • 0347286963 scopus 로고    scopus 로고
    • Suppression of spontaneous and hydrogen peroxide-induced mutations by a MutT-type nucleotide pool sanitization enzyme, the Escherichia coli Orf135 protein
    • Kamiya,H., Iida,E., Murata-Kamiya,N., Yamamoto,Y., Miki,T. and Harashima,H. (2003) Suppression of spontaneous and hydrogen peroxide-induced mutations by a MutT-type nucleotide pool sanitization enzyme, the Escherichia coli Orf135 protein. Genes Cells, 8, 941-950.
    • (2003) Genes Cells , vol.8 , pp. 941-950
    • Kamiya, H.1    Iida, E.2    Murata-Kamiya, N.3    Yamamoto, Y.4    Miki, T.5    Harashima, H.6
  • 13
  • 14
    • 0033603344 scopus 로고    scopus 로고
    • The oxidized forms of dATP are substrates for the human MutT homologue, the hMTH1 protein
    • Fujikawa,K., Kamiya,H., Yakushiji,H., Fujii,Y., Nakabeppu,Y. and Kasai,H. (1999) The oxidized forms of dATP are substrates for the human MutT homologue, the hMTH1 protein. J. Biol. Chem., 274, 18201-18205.
    • (1999) J. Biol. Chem. , vol.274 , pp. 18201-18205
    • Fujikawa, K.1    Kamiya, H.2    Yakushiji, H.3    Fujii, Y.4    Nakabeppu, Y.5    Kasai, H.6
  • 19
    • 34547441808 scopus 로고    scopus 로고
    • Measurement of 7 8-dihydro-8-oxo-2'- deoxyguanosine metabolism in MCF-7 cells at low concentrations using accelerator mass spectrometry
    • Hah,S.S., Mundt,J.M., Kim,H.M., Sumbad,R.A., Turteltaub,K.W. and Henderson,P.T. (2007) Measurement of 7,8-dihydro-8-oxo-2'- deoxyguanosine metabolism in MCF-7 cells at low concentrations using accelerator mass spectrometry. Proc. Natl Acad. Sci. USA, 104, 11203-11208.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 11203-11208
    • Hah, S.S.1    Mundt, J.M.2    Kim, H.M.3    Sumbad, R.A.4    Turteltaub, K.W.5    Henderson, P.T.6
  • 20
    • 33750344433 scopus 로고    scopus 로고
    • Environmental stress and lesion-bypass DNA polymerases
    • Nohmi,T. (2006) Environmental stress and lesion-bypass DNA polymerases. Annu. Rev. Microbiol., 60, 231-253.
    • (2006) Annu. Rev. Microbiol. , vol.60 , pp. 231-253
    • Nohmi, T.1
  • 22
    • 33745444058 scopus 로고    scopus 로고
    • Involvement of Y-family DNA polymerases in mutagenesis caused by oxidized nucleotides in Escherichia coli
    • Yamada,M., Nunoshiba,T., Shimizu,M., Gruz,P., Kamiya,H., Harashima,H. and Nohmi,T. (2006) Involvement of Y-family DNA polymerases in mutagenesis caused by oxidized nucleotides in Escherichia coli. J. Bacteriol., 188, 4992-4995.
    • (2006) J. Bacteriol. , vol.188 , pp. 4992-4995
    • Yamada, M.1    Nunoshiba, T.2    Shimizu, M.3    Gruz, P.4    Kamiya, H.5    Harashima, H.6    Nohmi, T.7
  • 24
    • 39149101428 scopus 로고    scopus 로고
    • Specificity of mutations induced by incorporation of oxidized dNTPs into DNA by human DNA polymerase eta
    • Hidaka,K., Yamada,M., Kamiya,H., Masutani,C., Harashima,H., Hanaoka,F. and Nohmi,T. (2008) Specificity of mutations induced by incorporation of oxidized dNTPs into DNA by human DNA polymerase eta. DNA Repair (Amst.), 7, 497-506.
    • (2008) DNA Repair (Amst.) , vol.7 , pp. 497-506
    • Hidaka, K.1    Yamada, M.2    Kamiya, H.3    Masutani, C.4    Harashima, H.5    Hanaoka, F.6    Nohmi, T.7
  • 25
    • 63549145472 scopus 로고    scopus 로고
    • Involvement of specialized DNA polymerases in mutagenesis by 8-hydroxy-dGTP in human cells
    • Satou,K., Hori,M., Kawai,K., Kasai,H., Harashima,H. and Kamiya,H. (2009) Involvement of specialized DNA polymerases in mutagenesis by 8-hydroxy-dGTP in human cells. DNA Repair (Amst.), 8, 637-642.
    • (2009) DNA Repair (Amst. ) , vol.8 , pp. 637-642
    • Satou, K.1    Hori, M.2    Kawai, K.3    Kasai, H.4    Harashima, H.5    Kamiya, H.6
  • 26
    • 0025891866 scopus 로고
    • NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo-7H-dG) opposite deoxyadenosine in a DNA duplex 8-Oxo-7H-dG(syn). dA(anti) alignment at lesion site
    • Kouchakdjian,M., Bodepudi,V., Shibutani,S., Eisenberg,M., Johnson,F., Grollman,A.P. and Patel,D.J. (1991) NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo-7H-dG) opposite deoxyadenosine in a DNA duplex. 8-Oxo-7H-dG(syn).dA(anti) alignment at lesion site. Biochemistry, 30, 1403-1412.
    • (1991) Biochemistry , vol.30 , pp. 1403-1412
    • Kouchakdjian, M.1    Bodepudi, V.2    Shibutani, S.3    Eisenberg, M.4    Johnson, F.5    Grollman, A.P.6    Patel, D.J.7
  • 28
    • 21244506437 scopus 로고    scopus 로고
    • Eukaryotic translesion synthesis DNA polymerases: specificity of structure and function
    • Prakash,S., Johnson,R.E. and Prakash,L. (2005) Eukaryotic translesion synthesis DNA polymerases: specificity of structure and function. Annu. Rev. Biochem., 74, 317-353.
    • (2005) Annu. Rev. Biochem. , vol.74 , pp. 317-353
    • Prakash, S.1    Johnson, R.E.2    Prakash, L.3
  • 29
    • 0035812849 scopus 로고    scopus 로고
    • Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication
    • Ling,H., Boudsocq,F., Woodgate,R. and Yang,W. (2001) Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication. Cell, 107, 91-102.
    • (2001) Cell , vol.107 , pp. 91-102
    • Ling, H.1    Boudsocq, F.2    Woodgate, R.3    Yang, W.4
  • 30
    • 36048931023 scopus 로고    scopus 로고
    • Bypass of DNA lesions generated during anticancer treatment with cisplatin by DNA polymerase eta
    • Alt,A., Lammens,K., Chiocchini,C., Lammens,A., Pieck,J.C., Kuch,D., Hopfner,K.P. and Carell,T. (2007) Bypass of DNA lesions generated during anticancer treatment with cisplatin by DNA polymerase eta. Science, 318, 967-970.
    • (2007) Science , vol.318 , pp. 967-970
    • Alt, A.1    Lammens, K.2    Chiocchini, C.3    Lammens, A.4    Pieck, J.C.5    Kuch, D.6    Hopfner, K.P.7    Carell, T.8
  • 31
    • 66149161889 scopus 로고    scopus 로고
    • The steric gate amino acid tyrosine 112 is required for efficient mismatched-primer extension by human DNA polymerase kappa
    • Niimi,N., Sassa,A., Katafuchi,A., Gruz,P., Fujimoto,H., Bonala,R.R., Johnson,F., Ohta,T. and Nohmi,T. (2009) The steric gate amino acid tyrosine 112 is required for efficient mismatched-primer extension by human DNA polymerase kappa. Biochemistry, 48, 4239-4246.
    • (2009) Biochemistry , vol.48 , pp. 4239-4246
    • Niimi, N.1    Sassa, A.2    Katafuchi, A.3    Gruz, P.4    Fujimoto, H.5    Bonala, R.R.6    Johnson, F.7    Ohta, T.8    Nohmi, T.9
  • 33
    • 0034847259 scopus 로고    scopus 로고
    • Structure of the catalytic core of S. cerevisiae DNA polymerase eta: implications for translesion DNA synthesis
    • Trincao,J., Johnson,R.E., Escalante,C.R., Prakash,S., Prakash,L. and Aggarwal,A.K. (2001) Structure of the catalytic core of S. cerevisiae DNA polymerase eta: implications for translesion DNA synthesis. Mol. Cell, 8, 417-426.
    • (2001) Mol. Cell , vol.8 , pp. 417-426
    • Trincao, J.1    Johnson, R.E.2    Escalante, C.R.3    Prakash, S.4    Prakash, L.5    Aggarwal, A.K.6
  • 35
    • 0037115963 scopus 로고    scopus 로고
    • Oxidative nucleotide damage: consequences and prevention
    • Sekiguchi,M. and Tsuzuki,T. (2002) Oxidative nucleotide damage: consequences and prevention. Oncogene, 21, 8895-8904.
    • (2002) Oncogene , vol.21 , pp. 8895-8904
    • Sekiguchi, M.1    Tsuzuki, T.2
  • 36
    • 0035830851 scopus 로고    scopus 로고
    • Fidelity of nucleotide insertion at 8-oxo-7 8-dihydroguanine by mammalian DNA polymerase d. Steady-state and pre-steady-state kinetic analysis
    • Einolf,H.J. and Guengerich,F.P. (2001) Fidelity of nucleotide insertion at 8-oxo-7,8-dihydroguanine by mammalian DNA polymerase d. Steady-state and pre-steady-state kinetic analysis. J. Biol. Chem., 276, 3764-3771.
    • (2001) J. Biol. Chem. , vol.276 , pp. 3764-3771
    • Einolf, H.J.1    Guengerich, F.P.2
  • 37
    • 0032558424 scopus 로고    scopus 로고
    • Steady-state and pre-steady-state kinetic analysis of 8-oxo-7 8-dihydroguanosine triphosphate incorporation and extension by replicative and repair DNA polymerases
    • Einolf,H.J., Schnetz-Boutaud,N. and Guengerich,F.P. (1998) Steady-state and pre-steady-state kinetic analysis of 8-oxo-7,8-dihydroguanosine triphosphate incorporation and extension by replicative and repair DNA polymerases. Biochemistry, 37, 13300-13312.
    • (1998) Biochemistry , vol.37 , pp. 13300-13312
    • Einolf, H.J.1    Schnetz-Boutaud, N.2    Guengerich, F.P.3
  • 38
    • 34548570175 scopus 로고    scopus 로고
    • A highly conserved tyrosine residue of family B DNA polymerases contributes to dictate translesion synthesis past 8-oxo-7 8-dihydro-2'-deoxyguanosine
    • de Vega,M. and Salas,M. (2007) A highly conserved tyrosine residue of family B DNA polymerases contributes to dictate translesion synthesis past 8-oxo-7,8-dihydro-2'-deoxyguanosine. Nucleic Acids Res., 35, 5096-5107.
    • (2007) Nucleic Acids Res , vol.35 , pp. 5096-5107
    • de Vega, M.1    Salas, M.2
  • 39
    • 0034620584 scopus 로고    scopus 로고
    • 8-oxodGTP incorporation by DNA polymerase b is modified by active-site residue Asn279
    • Miller,H., Prasad,R., Wilson,S.H., Johnson,F. and Grollman,A.P. (2000) 8-oxodGTP incorporation by DNA polymerase b is modified by active-site residue Asn279. Biochemistry, 39, 1029-1033.
    • (2000) Biochemistry , vol.39 , pp. 1029-1033
    • Miller, H.1    Prasad, R.2    Wilson, S.H.3    Johnson, F.4    Grollman, A.P.5
  • 40
    • 0029133347 scopus 로고
    • Formation of 2-hydroxydeoxyadenosine triphosphate, an oxidatively damaged nucleotide, and its incorporation by DNA polymerases Steady-state kinetics of the incorporation
    • Kamiya,H. and Kasai,H. (1995) Formation of 2-hydroxydeoxyadenosine triphosphate, an oxidatively damaged nucleotide, and its incorporation by DNA polymerases. Steady-state kinetics of the incorporation. J. Biol. Chem., 270, 19446-19450.
    • (1995) J. Biol. Chem. , vol.270 , pp. 19446-19450
    • Kamiya, H.1    Kasai, H.2
  • 41
    • 27844492836 scopus 로고    scopus 로고
    • Modulation of oxidative mutagenesis and carcinogenesis by polymorphic forms of human DNA repair enzymes
    • Nohmi,T., Kim,S.R. and Yamada,M. (2005) Modulation of oxidative mutagenesis and carcinogenesis by polymorphic forms of human DNA repair enzymes. Mutat. Res., 591, 60-73.
    • (2005) Mutat. Res. , vol.591 , pp. 60-73
    • Nohmi, T.1    Kim, S.R.2    Yamada, M.3
  • 42
    • 0037205001 scopus 로고    scopus 로고
    • Specialized DNA polymerases, cellular survival, and the genesis of mutations
    • Friedberg,E.C., Wagner,R. and Radman,M. (2002) Specialized DNA polymerases, cellular survival, and the genesis of mutations. Science, 296, 1627-1630.
    • (2002) Science , vol.296 , pp. 1627-1630
    • Friedberg, E.C.1    Wagner, R.2    Radman, M.3
  • 43
    • 24944557945 scopus 로고    scopus 로고
    • 8-oxoguanine incorporation into DNA repeats in vitro and mismatch recognition by MutSalpha
    • Macpherson,P., Barone,F., Maga,G., Mazzei,F., Karran,P. and Bignami,M. (2005) 8-oxoguanine incorporation into DNA repeats in vitro and mismatch recognition by MutSalpha. Nucleic Acids Res., 33, 5094-5105.
    • (2005) Nucleic Acids Res , vol.33 , pp. 5094-5105
    • Macpherson, P.1    Barone, F.2    Maga, G.3    Mazzei, F.4    Karran, P.5    Bignami, M.6
  • 44
    • 0035866372 scopus 로고    scopus 로고
    • Involvement of mammalian MLH1 in the apoptotic response to peroxide-induced oxidative stress
    • Hardman,R.A., Afshari,C.A. and Barrett,J.C. (2001) Involvement of mammalian MLH1 in the apoptotic response to peroxide-induced oxidative stress. Cancer Res., 61, 1392-1397.
    • (2001) Cancer Res , vol.61 , pp. 1392-1397
    • Hardman, R.A.1    Afshari, C.A.2    Barrett, J.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.