Photoinduced thymine dimerization studied by semiclassical dynamics simulation

Journal of Physical Chemistry C

Volumn 114, Issue 12, 2010, Pages 5594-5601

  Zhang, Wenying ^a,b   Yuan, Shuai ^a   Li, Anyang ^a   Dou, Yusheng ^a,c   Zhao, Jianshe ^b   Fang, Weihai ^d  

^a CHONGQING UNIVERSITY OF POSTS AND TELECOMMUNICATIONS   (China)

^b NORTHWEST UNIVERSITY   (China)

^c NICHOLLS STATE UNIVERSITY   (United States)

^d BEIJING NORMAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CYCLOBUTANE PYRIMIDINE DIMERS; DNA DAMAGES; ELECTRONIC GROUND STATE; EXCIMERS; FLUENCES; GAUSSIAN SHAPE; PHOTO-INDUCED; PHOTO-INDUCED DNA DAMAGE; PHOTON ENERGY; PYRIMIDINE RING; REACTION PATHS; SEMICLASSICAL DYNAMICS; ULTRASHORT LASER PULSE;

BOND STRENGTH (CHEMICAL); BUTANE; DNA; GENES; LASER PULSES; MOLECULES;

PULSED LASER APPLICATIONS;

EID: 77950238240     PISSN: 19327447     EISSN: 19327455     Source Type: Journal    
DOI: 10.1021/jp907290f     Document Type: Article

References (47)

1. Beukers, R.; Berends, W. Biochim. Biophys. Acta 1960, 41, 550-551.
2. Beukers, R.; Eker, A. P. M.; Lohman, P. H. M. DNA Repair 2008, 7, 530-543.
3. Sihna, R. P.; Häder, D.-P. Photochem. Photobiol. Sci. 2002, 1, 225-236.
4. Mouret, S.; Baudouin, C.; Charveron, M.; Favier, A.; Cadet, J.; Douki, T. Proc. Natl. Acad. Sci. 2006, 103, 13765-13770.
5. Schreier, W. J.; Kubon, J.; Regner, N.; Haiser, K.; Schrader, T. E.; Zinth, W.; Clivio, P.; Gilch, P. J. Am. Chem. Soc. 2009, 131, 5038-5039.
6. Boggio-Pasqua, M.; Groenhof, G.; Schäfer, L. V.; Grubmüller, H.; Robb, M. A. J. Am. Chem. Soc. 2007, 129, 10996-10997.
7. Blancafort, L.; Celani, P.; Bearpark, M. J.; Robb, M. A. Theor. Chem. Acc. 2003, 110, 92-99.
8. Blancafort, L.; Migani, A. J. Am. Chem. Soc. 2007, 129, 14540-14541.
9. Crespo-Hernández, C. E.; Kohler, B. J. Phys. Chem. B 2004, 108, 11182-11188.
10. Durbeej, B.; Leif, A.; Eriksson, L. A. J. Photochem. Photobiol. A: Chem. 2002, 152, 95-101.
11. Johnson, A. T.; Wiest, O. J. Phys. Chem. B 2007, 111, 14398-14404.
12. O'Neil, L. L.; Wiest, O. J. Phys. Chem. B 2007, 111, 11843-11849.
13. Dedachi, K. I.; Natsume, T.; Nakatsu, T.; Tanaka, S.; Ishikawa, Y.; Kurita, N. Chem. Phys. Lett. 2007, 436, 244-251.
14. Crespo-Hernández, C. E.; Cohen, B.; Kohler, B. Nature 2005, 436, 1141-1144.
15. Law, Y. K.; Azadi, J.; Crespo-Hernández, C. E.; Olmon, E.; Kohler, B. Biophys. J. 2008, 94, 3590-3600.
16. Moriou, C.; Thomas, M.; Adeline, M. T.; Martin, M. T.; Chiaroni, A.; Pochet, S.; Fourrey, J. L.; Favre, A.; Clivio, P. J. Org. Chem. 2007, 72, 43-50.
17. Santini, G. P. H.; Pakleza, C.; Auffinger, P.; Moriou, C.; Favre, A.; Clivio, P.; Cognet, J. A. H. J. Phys. Chem. B 2007, 111, 9400-9409.
18. Eisinger, J.; Lamola, A. Biochem. Biophys. Res. Commun. 1967, 28, 558-565.
19. Eisinger, J.; Shulman, R. G. Proc. Natl. Acad. Sci. 1967, 58, 895-900.
20. Lamola, A. A.; Eisinger, J. Proc. Natl. Acad. Sci. 1968, 59, 46-51.
21. Leonard, N. J.; McCredie, R. S.; Logue, M. W.; Cundall, R. L J. Am. Chem. Soc. 1973, 95, 2320-2324.
22. Kleopfer, R.; Morrison, H. J. Am. Chem. Soc. 1972, 94, 255.
23. Schreier, W. J.; Schrader, T. E.; Koller, F. O.; Gilch, P.; Crespo-Hernández, C. E.; Swaminathan, V. N.; Carell, T.; Zinth, W.; Kohler, B. Science 2007, 315, 625-629.
24. Marguet, S.; Markovitsi, D. J. Am. Chem. Soc. 2005, 127, 5780-5781.
25. Cadet, J.; Vigny, P. In Bioorganic Photochemistry; Morrison, H., Ed.; John Wiley & Sons: New York, 1990; pp 1-272.
26. Zhang, R. B.; Eriksson, L. A. J. Phys. Chem. B 2006, 110, 7556-7562.
27. Kwok, W. M.; Ma, C.; Phillips, D. L. J. Am. Chem. Soc. 2008, 130, 5131-5139.
28. Dou, Y.; Torralva, B. R.; Allen, R. E. J. Mod. Opt. 2003, 50, 2615-2643.
29. Dou, Y.; Torralva, B. R.; Allen, R. E. Chem. Phys. Lett. 2004, 392, 352-357.
30. Graf, M.; Vogl, P. Phys. Rev. B 1995, 51, 4940-4949.
31. See also Boykin, T. B.; Bowen, R. C.; Klimeck, G. Phys. Rev. B 2001, 63, 245314).
32. Porezag, D.; Frauenheim, Th.; Köhler, Th.; Seifert, G.; Kaschner, R. Phys. Rev. B 1995, 51, 12947-12957.
33. Elstner, M.; Porezag, D.; Jungnickel, G.; Elsner, J.; Haugk, M.; Frauenheim, Th.; Suhai, S.; Seifert, G. Phys. Rev. B 1998, 58, 7260-7268.
34. Dou, Y.; Lei, Y.; Li, A.; Wen, Z.; Torralva, B. R.; Lo, G. V.; Allen, R. E. J. Phys. Chem. A 2007, 111, 1133-1137.
35. Torralva, B. R.; Niehaus, T. A.; Elstner, M.; Suhai, S.; Frauenheim, Th.; Allen, R. E. Phys. Rev. B 2001, 64, 153105.
36. Dou, Y.; Allen, R. E. J. Chem. Phys. 2003, 19, 10658-10666.
37. Yuan, S.; Wu, W.; Dou, Y.; Zhao, J. Chin. Chem. Lett. 2008, 19, 1379-1382.
38. Yuan, S.; Dou, Y.; Wu, W.; Hu, Y.; Zhao, J. J. Phys. Chem. A 2008, 112, 13326-13334.
39. Allen, R. E.; Dumitrica, T.; Torralva, B. R. In Ultrafast Physical Processes in Semiconductors; Tsen, K. T., Ed.; Academic Press: New York, 2001; Chapter 7.
40. Ben-Nun, M.; Martínez, T. J. Adv. Chem. Phys. 2002, 124, 439-512.
41. Born, M.; Oppenheimer, J. R. Ann. Phys. (Leipzig) 1927, 84, 457.
42. Born, M.; Huang, K. The Dynamical Theory of Crystal Lattices; Oxford University Press: London, 1954.
43. Teller, E. J. Phys. Chem. 1937, 41, 109-116.
44. Conical Intersections: Electronic Structure, Dynamics, and Spectroscopy; Domcke, W., et al., Eds.; World Scientific: Singapore, 2004.
45. Baer, M. Beyond Born-Oppenheimer: Electronic Nonadiabatic Coupling Terms and Conical Intersections; Wiley Interscience: Hoboken, 2006.
46. Bearpark, M. J.; Bernardi, F.; Clifford, S.; Olivucci, M.; Robb, M. A.; Vreven, T. J. Phys. Chem. A 1997, 101, 3841-3847.
47. Levine, B. G.; Martínez, T. J. Annu. Rev. Phys. Chem. 2007, 58, 613-634.