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Volumn 4, Issue 12, 2009, Pages

Molecular evolution of Drosophila cuticular protein genes

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; CUTICULAR PROTEIN; DROSOPHILA PROTEIN; INSECT PROTEIN; NUCLEOTIDE; PROTEIN CPF; PROTEIN CPFL; PROTEIN CPLCG; PROTEIN CPR; PROTEIN TWEEDLE; PROTEOME; UNCLASSIFIED DRUG; CUTICLE PROTEINS, INSECTS;

EID: 77949500912     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0008345     Document Type: Article
Times cited : (52)

References (49)
  • 2
    • 70349188499 scopus 로고    scopus 로고
    • Evidence of multiple pyrethroid resistance mechanisms in the malaria vector Anopheles gambiae sensu stricto from Nigeria
    • Awolola TS, Oduola OA, Strode C, Koekemoer LL, Brooke B, et al. (2008) Evidence of multiple pyrethroid resistance mechanisms in the malaria vector Anopheles gambiae sensu stricto from Nigeria. Trans R Soc Trop Med Hyg.
    • (2008) Trans R Soc Trop Med Hyg
    • Awolola, T.S.1    Oduola, O.A.2    Strode, C.3    Koekemoer, L.L.4    Brooke, B.5
  • 3
    • 34248325168 scopus 로고    scopus 로고
    • Transcriptional analysis of insecticide resistance in Anopheles stephensi using cross-species microarray hybridization
    • Vontas J, David JP, Nikou D, Hemingway J, Christophides GK, et al. (2007) Transcriptional analysis of insecticide resistance in Anopheles stephensi using cross-species microarray hybridization. Insect Mol Biol 16: 315-324.
    • (2007) Insect Mol Biol , vol.16 , pp. 315-324
    • Vontas, J.1    David, J.P.2    Nikou, D.3    Hemingway, J.4    Christophides, G.K.5
  • 4
    • 70350147301 scopus 로고    scopus 로고
    • The Population genomics of trans-specific inversion polymorphisms in Anopheles gambiae
    • White BJ, Cheng C, Sangare D, Lobo NF, Collins FH, et al. (2009) The Population genomics of trans-specific inversion polymorphisms in Anopheles gambiae. Genetics. DOI:109.105817.
    • (2009) Genetics. DOI , vol.109 , pp. 105817
    • White, B.J.1    Cheng, C.2    Sangare, D.3    Lobo, N.F.4    Collins, F.H.5
  • 5
    • 0030671264 scopus 로고    scopus 로고
    • A cluster of cuticle protein genes of Drosophila melanogaster at 65A: Sequence, structure and evolution
    • Charles JP, Chihara C, Nejad S, Riddiford LM (1997) A cluster of cuticle protein genes of Drosophila melanogaster at 65A: sequence, structure and evolution. Genetics 147: 1213-1224.
    • (1997) Genetics , vol.147 , pp. 1213-1224
    • Charles, J.P.1    Chihara, C.2    Nejad, S.3    Riddiford, L.M.4
  • 6
    • 40049093876 scopus 로고    scopus 로고
    • Annotation and analysis of a large cuticular protein family with the R&R Consensus in Anopheles gambiae
    • Cornman RS, Togawa T, Dunn WA, He N, Emmons AC, et al. (2008) Annotation and analysis of a large cuticular protein family with the R&R Consensus in Anopheles gambiae. BMC Genomics 9: 22.
    • (2008) BMC Genomics , vol.9 , pp. 22
    • Cornman, R.S.1    Togawa, T.2    Dunn, W.A.3    He, N.4    Emmons, A.C.5
  • 7
    • 70349193687 scopus 로고    scopus 로고
    • Annotation and analysis of low-complexity protein families of Anopheles gambiae that are associated with cuticle
    • Cornman RS, Willis JH (2009) Annotation and analysis of low-complexity protein families of Anopheles gambiae that are associated with cuticle. Insect Mol Biol 18: 607-622.
    • (2009) Insect Mol Biol , vol.18 , pp. 607-622
    • Cornman, R.S.1    Willis, J.H.2
  • 8
    • 0029843090 scopus 로고    scopus 로고
    • Evolution of the larval cuticle proteins coded by the secondary sex chromosome pair: X2 and neo-Y of Drosophila miranda: II. Comparison at the amino acid sequence level
    • Steinemann M, Steinemann S, Pinsker W (1996) Evolution of the larval cuticle proteins coded by the secondary sex chromosome pair: X2 and neo-Y of Drosophila miranda: II. Comparison at the amino acid sequence level. J Mol Evol 43: 413-417.
    • (1996) J Mol Evol , vol.43 , pp. 413-417
    • Steinemann, M.1    Steinemann, S.2    Pinsker, W.3
  • 9
    • 0023688992 scopus 로고
    • Structure and expression of a Manduca sexta larval cuticle gene homologous to Drosophila cuticle genes
    • Rebers JE, Riddiford LM (1988) Structure and expression of a Manduca sexta larval cuticle gene homologous to Drosophila cuticle genes. J Mol Biol 203: 411-423.
    • (1988) J Mol Biol , vol.203 , pp. 411-423
    • Rebers, J.E.1    Riddiford, L.M.2
  • 10
    • 0034804735 scopus 로고    scopus 로고
    • A conserved domain in arthropod cuticular proteins binds chitin
    • Rebers JE, Willis JH (2001) A conserved domain in arthropod cuticular proteins binds chitin. Insect Biochem Mol Biol 31: 1083-1093.
    • (2001) Insect Biochem Mol Biol , vol.31 , pp. 1083-1093
    • Rebers, J.E.1    Willis, J.H.2
  • 11
    • 4744354730 scopus 로고    scopus 로고
    • Analysis of the chitin recognition mechanism of cuticle proteins from the soft cuticle of the silkworm, Bombyx mori
    • Togawa T, Nakato H, Izumi S (2004) Analysis of the chitin recognition mechanism of cuticle proteins from the soft cuticle of the silkworm, Bombyx mori. Insect Biochem Mol Biol 34: 1059-1067.
    • (2004) Insect Biochem Mol Biol , vol.34 , pp. 1059-1067
    • Togawa, T.1    Nakato, H.2    Izumi, S.3
  • 12
  • 13
    • 34447095720 scopus 로고    scopus 로고
    • Drosophila cuticular proteins with the R&R Consensus: Annotation and classification with a new tool for discriminating RR-1 and RR-2 sequences
    • Karouzou MV, Spyropoulos Y, Iconomidou VA, Cornman RS, Hamodrakas SJ, et al. (2007) Drosophila cuticular proteins with the R&R Consensus: annotation and classification with a new tool for discriminating RR-1 and RR-2 sequences. Insect Biochem Mol Biol 37: 754-760.
    • (2007) Insect Biochem Mol Biol , vol.37 , pp. 754-760
    • Karouzou, M.V.1    Spyropoulos, Y.2    Iconomidou, V.A.3    Cornman, R.S.4    Hamodrakas, S.J.5
  • 14
    • 33750948614 scopus 로고    scopus 로고
    • Mutation of TweedleD, a member of an unconventional cuticle protein family, alters body shape in Drosophila
    • Guan X, Middlebrooks BW, Alexander S, Wasserman SA (2006) Mutation of TweedleD, a member of an unconventional cuticle protein family, alters body shape in Drosophila. Proc Natl Acad Sci U S A 103: 16794-16799.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 16794-16799
    • Guan, X.1    Middlebrooks, B.W.2    Alexander, S.3    Wasserman, S.A.4
  • 15
    • 0031081780 scopus 로고    scopus 로고
    • Sequence studies of proteins from larval and pupal cuticle of the yellow meal worm, Tenebrio molitor
    • Andersen SO, Rafn K, Roepstorff P (1997) Sequence studies of proteins from larval and pupal cuticle of the yellow meal worm, Tenebrio molitor. Insect Biochem Mol Biol 27: 121-131.
    • (1997) Insect Biochem Mol Biol , vol.27 , pp. 121-131
    • Andersen, S.O.1    Rafn, K.2    Roepstorff, P.3
  • 16
    • 34249712898 scopus 로고    scopus 로고
    • CPF and CPFL, two related gene families encoding cuticular proteins of Anopheles gambiae and other insects
    • Togawa T, Augustine Dunn W, Emmons AC, Willis JH (2007) CPF and CPFL, two related gene families encoding cuticular proteins of Anopheles gambiae and other insects. Insect Biochem Mol Biol 37: 675-688.
    • (2007) Insect Biochem Mol Biol , vol.37 , pp. 675-688
    • Togawa, T.1    Augustine, D.W.2    Emmons, A.C.3    Willis, J.H.4
  • 17
    • 0025797718 scopus 로고
    • 20-Hydroxyecdysone is required for, and negatively regulates, transcription of Drosophila pupal cuticle protein genes
    • Apple RT, Fristrom JW (1991) 20-Hydroxyecdysone is required for, and negatively regulates, transcription of Drosophila pupal cuticle protein genes. Dev Biol 146: 569-582.
    • (1991) Dev Biol , vol.146 , pp. 569-582
    • Apple, R.T.1    Fristrom, J.W.2
  • 18
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • Burge C, Karlin S (1997) Prediction of complete gene structures in human genomic DNA. J Mol Biol 268: 78-94.
    • (1997) J Mol Biol , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 19
    • 2942544417 scopus 로고    scopus 로고
    • Gene finding in novel genomes
    • Korf I (2004) Gene finding in novel genomes. BMC Bioinformatics 5: 59.
    • (2004) BMC Bioinformatics , vol.5 , pp. 59
    • Korf, I.1
  • 20
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
    • Kumar S, Tamura K, Nei M (2004) MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5: 150-163.
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 21
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones DT, Taylor WR, Thornton JM (1992) The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8: 275-282.
    • (1992) Comput Appl Biosci , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 22
    • 23744452485 scopus 로고    scopus 로고
    • Estimating the tempo and mode of gene family evolution from comparative genomic data
    • Hahn MW, De Bie T, Stajich JE, Nguyen C, Cristianini N (2005) Estimating the tempo and mode of gene family evolution from comparative genomic data. Genome Res 15: 1153-1160.
    • (2005) Genome Res , vol.15 , pp. 1153-1160
    • Hahn, M.W.1    de Bie, T.2    Stajich, J.E.3    Nguyen, C.4    Cristianini, N.5
  • 23
    • 36048950933 scopus 로고    scopus 로고
    • Gene family evolution across 12 Drosophila genomes
    • Hahn MW, Han MV, Han SG (2007) Gene family evolution across 12 Drosophila genomes. PLoS Genet 3: e197.
    • (2007) PLoS Genet , vol.e197 , pp. 3
    • Hahn, M.W.1    Han, M.V.2    Han, S.G.3
  • 24
    • 0035527407 scopus 로고    scopus 로고
    • Toward understanding Anophelinae (Diptera, Culicidae) phylogeny: Insights from nuclear single-copy genes and the weight of evidence
    • Krzywinski J, Wilkerson RC, Besansky NJ (2001) Toward understanding Anophelinae (Diptera, Culicidae) phylogeny: insights from nuclear single-copy genes and the weight of evidence. Syst Biol 50: 540-556.
    • (2001) Syst Biol , vol.50 , pp. 540-556
    • Krzywinski, J.1    Wilkerson, R.C.2    Besansky, N.J.3
  • 25
    • 0036094818 scopus 로고    scopus 로고
    • An insect molecular clock dates the origin of the insects and accords with palaeontological and biogeographic landmarks
    • Gaunt MW, Miles MA (2002) An insect molecular clock dates the origin of the insects and accords with palaeontological and biogeographic landmarks. Mol Biol Evol 19: 748-761.
    • (2002) Mol Biol Evol , vol.19 , pp. 748-761
    • Gaunt, M.W.1    Miles, M.A.2
  • 26
    • 0029654258 scopus 로고
    • A dot-matrix program with dynamic threshold control suited for genomicDNA and protein sequence analysis
    • Sonnhammer EL, Durbin R (1995) A dot-matrix program with dynamic threshold control suited for genomicDNA and protein sequence analysis. Gene 167: GC1-10.
    • (1995) Gene , vol.167
    • Sonnhammer, E.L.1    Durbin, R.2
  • 27
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: Recombination detection and analysis from sequence alignments
    • Martin DP, Williamson C, Posada D (2005) RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21: 260-262.
    • (2005) Bioinformatics , vol.21 , pp. 260-262
    • Martin, D.P.1    Williamson, C.2    Posada, D.3
  • 28
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sanchez-Delbarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 29
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 13: 555-556.
    • (1997) Comput Appl Biosci , vol.13 , pp. 555-556
    • Yang, Z.1
  • 30
    • 40049095998 scopus 로고    scopus 로고
    • Developmental expression patterns of cuticular protein genes with the R&R Consensus from Anopheles gambiae
    • Togawa T, Dunn WA, Emmons AC, Nagao J, Willis JH (2008) Developmental expression patterns of cuticular protein genes with the R&R Consensus from Anopheles gambiae. Insect Biochem Mol Biol 38: 508-519.
    • (2008) Insect Biochem Mol Biol , vol.38 , pp. 508-519
    • Togawa, T.1    Dunn, W.A.2    Emmons, A.C.3    Nagao, J.4    Willis, J.H.5
  • 31
    • 67651158912 scopus 로고    scopus 로고
    • The cis-regulatory sequences required for expression of the Drosophila melanogaster adult cuticle gene ACP65A
    • Lestradet M, Gervasio E, Fraichard S, Dupas S, Alabouvette J, et al. (2009) The cis-regulatory sequences required for expression of the Drosophila melanogaster adult cuticle gene ACP65A. Insect Mol Biol 18: 431-441.
    • (2009) Insect Mol Biol , vol.18 , pp. 431-441
    • Lestradet, M.1    Gervasio, E.2    Fraichard, S.3    Dupas, S.4    Alabouvette, J.5
  • 32
    • 27944477670 scopus 로고    scopus 로고
    • Concerted and birth-and-death evolution of multigene families
    • Nei M, Rooney AP (2005) Concerted and birth-and-death evolution of multigene families. Annu Rev Genet 39: 121-152.
    • (2005) Annu Rev Genet , vol.39 , pp. 121-152
    • Nei, M.1    Rooney, A.P.2
  • 33
    • 0023788886 scopus 로고
    • Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis
    • Sen D, Gilbert W (1988) Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis. Nature 334: 364-366.
    • (1988) Nature , vol.334 , pp. 364-366
    • Sen, D.1    Gilbert, W.2
  • 34
    • 84887212593 scopus 로고    scopus 로고
    • Genome-wide analyses of recombination prone regions predict role of DNA structural motif in recombination
    • Mani P, Yadav VK, Das SK, Chowdhury S (2009) Genome-wide analyses of recombination prone regions predict role of DNA structural motif in recombination. PLoS One 4: e4399.
    • (2009) PLoS One , vol.e4399 , pp. 4
    • Mani, P.1    Yadav, V.K.2    Das, S.K.3    Chowdhury, S.4
  • 35
    • 47149117454 scopus 로고    scopus 로고
    • Evolution of genes and genomes on the Drosophila phylogeny
    • Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, et al. (2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218.
    • (2007) Nature , vol.450 , pp. 203-218
    • Clark, A.G.1    Eisen, M.B.2    Smith, D.R.3    Bergman, C.M.4    Oliver, B.5
  • 36
    • 0031792828 scopus 로고    scopus 로고
    • Models of amino acid substitution and applications to mitochondrial protein evolution
    • Yang Z, Nielsen R, Hasegawa M (1998) Models of amino acid substitution and applications to mitochondrial protein evolution. Mol Biol Evol 15: 1600-1611.
    • (1998) Mol Biol Evol , vol.15 , pp. 1600-1611
    • Yang, Z.1    Nielsen, R.2    Hasegawa, M.3
  • 37
    • 0033105306 scopus 로고    scopus 로고
    • Isolation and characterization of drosocrystallin, a lens crystallin gene of Drosophila melanogaster
    • Janssens H, Gehring WJ (1999) Isolation and characterization of drosocrystallin, a lens crystallin gene of Drosophila melanogaster. Dev Biol 207: 204-214.
    • (1999) Dev Biol , vol.207 , pp. 204-214
    • Janssens, H.1    Gehring, W.J.2
  • 38
    • 0026695844 scopus 로고
    • Drosocrystallin, a major 52 kDa glycoprotein of the Drosophila melanogaster corneal lens. Purification, biochemical characterization, and subcellular localization
    • Komori N, Usukura J, Matsumoto H (1992) Drosocrystallin, a major 52 kDa glycoprotein of the Drosophila melanogaster corneal lens. Purification, biochemical characterization, and subcellular localization. J Cell Sci 102 (Pt 2): 191-201.
    • (1992) J Cell Sci , vol.102 , Issue.Pt 2 , pp. 191-201
    • Komori, N.1    Usukura, J.2    Matsumoto, H.3
  • 39
    • 27144527038 scopus 로고    scopus 로고
    • Synthesis and properties of crosslinked recombinant pro-resilin
    • Elvin CM, Carr AG, Huson MG, Maxwell JM, Pearson RD, et al. (2005) Synthesis and properties of crosslinked recombinant pro-resilin. Nature 437: 999-1002.
    • (2005) Nature , vol.437 , pp. 999-1002
    • Elvin, C.M.1    Carr, A.G.2    Huson, M.G.3    Maxwell, J.M.4    Pearson, R.D.5
  • 40
    • 69249221575 scopus 로고    scopus 로고
    • Molecular evolution of the major chemosensory gene families in insects
    • Sanchez-Gracia A, Vieira FG, Rozas J (2009) Molecular evolution of the major chemosensory gene families in insects. Heredity 103: 208-216.
    • (2009) Heredity , vol.103 , pp. 208-216
    • Sanchez-Gracia, A.1    Vieira, F.G.2    Rozas, J.3
  • 41
    • 25444477603 scopus 로고    scopus 로고
    • The Drosophila ACP65A cuticle gene: Deletion scanning analysis of cis-regulatory sequences and regulation by DHR38
    • Bruey-Sedano N, Alabouvette J, Lestradet M, Hong L, Girard A, et al. (2005) The Drosophila ACP65A cuticle gene: deletion scanning analysis of cis-regulatory sequences and regulation by DHR38. Genesis 43: 17-27.
    • (2005) Genesis , vol.43 , pp. 17-27
    • Bruey-Sedano, N.1    Alabouvette, J.2    Lestradet, M.3    Hong, L.4    Girard, A.5
  • 42
    • 0032029462 scopus 로고    scopus 로고
    • Identification of proteins and developmental expression of RNAs encoded by the 65A cuticle protein gene cluster in Drosophila melanogaster
    • Charles JP, Chihara C, Nejad S, Riddiford LM (1998) Identification of proteins and developmental expression of RNAs encoded by the 65A cuticle protein gene cluster in Drosophila melanogaster. Insect Biochem Mol Biol 28: 131-138.
    • (1998) Insect Biochem Mol Biol , vol.28 , pp. 131-138
    • Charles, J.P.1    Chihara, C.2    Nejad, S.3    Riddiford, L.M.4
  • 43
    • 67651160470 scopus 로고    scopus 로고
    • Elucidation of the regulation of an adult cuticle gene Acp65A by the transcription factor Broad
    • Cui HY, Lestradet M, Bruey-Sedano N, Charles JP, Riddiford LM (2009) Elucidation of the regulation of an adult cuticle gene Acp65A by the transcription factor Broad. Insect Mol Biol 18: 421-429.
    • (2009) Insect Mol Biol , vol.18 , pp. 421-429
    • Cui, H.Y.1    Lestradet, M.2    Bruey-Sedano, N.3    Charles, J.P.4    Riddiford, L.M.5
  • 45
    • 13944274945 scopus 로고    scopus 로고
    • Developmental gene amplification: Insights into DNA replication and gene expression
    • Claycomb JM, Orr-Weaver TL (2005) Developmental gene amplification: insights into DNA replication and gene expression. Trends Genet 21: 149-162.
    • (2005) Trends Genet , vol.21 , pp. 149-162
    • Claycomb, J.M.1    Orr-Weaver, T.L.2
  • 46
    • 0020092378 scopus 로고
    • The cuticle proteins of Drosophila melanogaster: Stage specificity
    • Chihara CJ, Silvert DJ, Fristrom JW (1982) The cuticle proteins of Drosophila melanogaster: stage specificity. Dev Biol 89: 379-388.
    • (1982) Dev Biol , vol.89 , pp. 379-388
    • Chihara, C.J.1    Silvert, D.J.2    Fristrom, J.W.3
  • 47
    • 0027898418 scopus 로고
    • The Hsp70 heat-shock gene family of the mosquito Anopheles albimanus
    • Benedict MQ, Cockburn AF, Seawright JA (1993) The Hsp70 heat-shock gene family of the mosquito Anopheles albimanus. Insect Mol Biol 2: 93-102.
    • (1993) Insect Mol Biol , vol.2 , pp. 93-102
    • Benedict, M.Q.1    Cockburn, A.F.2    Seawright, J.A.3
  • 49
    • 0036218945 scopus 로고    scopus 로고
    • Rapid concerted evolution via gene conversion at the Drosophila hsp70 genes
    • Bettencourt BR, Feder ME (2002) Rapid concerted evolution via gene conversion at the Drosophila hsp70 genes. J Mol Evol 54: 569-586.
    • (2002) J Mol Evol , vol.54 , pp. 569-586
    • Bettencourt, B.R.1    Feder, M.E.2


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