메뉴 건너뛰기




Volumn 61, Issue 1, 2010, Pages 102-112

Indexing agrobacterium vitis in asymptomatic grapevine propagation material by two nested PCR assays

Author keywords

16s rRNA; Bacterial endophytes; Opine; Vitis vinifera

Indexed keywords

AGROBACTERIUM VITIS; BACTERIA (MICROORGANISMS); RHIZOBIUM; VIRUSES; VITACEAE; VITIS; VITIS VINIFERA;

EID: 77949305463     PISSN: 00029254     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (9)

References (36)
  • 2
    • 0036164115 scopus 로고    scopus 로고
    • Characterization of Agrobacterium vitis strains isolated from Turkish grape cultivars in the Central Anatolia region
    • Argun, N., M.T. Momol, S. Maden, E.A. Momol, C.L. Reid, H. Çelik, and T.J. Burr. 2002. Characterization of Agrobacterium vitis strains isolated from Turkish grape cultivars in the Central Anatolia region. Plant Dis. 86:162-166.
    • (2002) Plant Dis , vol.86 , pp. 162-166
    • Argun, N.1    Momol, M.T.2    Maden, S.3    Momol, E.A.4    Reid, C.L.5    Çelik, H.6    Burr, T.J.7
  • 3
    • 53249156458 scopus 로고    scopus 로고
    • Detection of Agrobacterium vitis by PCR using novel virD2 gene-specific primers that discriminate two subgroups
    • Bini, F., K. Geider, and C. Bazzi. 2008. Detection of Agrobacterium vitis by PCR using novel virD2 gene-specific primers that discriminate two subgroups. Eur. J. Plant Pathol. 122:403-411.
    • (2008) Eur. J. Plant Pathol , vol.122 , pp. 403-411
    • Bini, F.1    Geider, K.2    Bazzi, C.3
  • 4
    • 0000117345 scopus 로고
    • Isolation of A. tumefaciens biovar 3 from grapevine galls and sap and vineyards soil
    • Burr, T.J., and B.H. Katz. 1983. Isolation of A. tumefaciens biovar 3 from grapevine galls and sap and vineyards soil. Phytopathology 73:163-165.
    • (1983) Phytopathology , vol.73 , pp. 163-165
    • Burr, T.J.1    Katz, B.H.2
  • 5
    • 0001128036 scopus 로고
    • Grapevine cuttings as potential sites of survival and means of dissemination of Agrobacterium tumefaciens
    • Burr, T.J., and B.H. Katz. 1984. Grapevine cuttings as potential sites of survival and means of dissemination of Agrobacterium tumefaciens. Plant Dis. 68:976-978.
    • (1984) Plant Dis , vol.68 , pp. 976-978
    • Burr, T.J.1    Katz, B.H.2
  • 6
    • 0032719440 scopus 로고    scopus 로고
    • Crown gall of grape: Biology and disease management
    • Burr, T.J., and L. Otten. 1999. Crown gall of grape: Biology and disease management. Ann. Rev. Phytopathol. 37:53-80.
    • (1999) Ann. Rev. Phytopathol , vol.37 , pp. 53-80
    • Burr, T.J.1    Otten, L.2
  • 7
    • 0031792275 scopus 로고    scopus 로고
    • Crown gall of grape: Biology of Agrobacterium vitis and development of disease control strategies
    • Burr, T.J., C. Bazzi, S. Sule, and L. Otten. 1998. Crown gall of grape: Biology of Agrobacterium vitis and development of disease control strategies. Plant Dis. 82:1288-1297.
    • (1998) Plant Dis , vol.82 , pp. 1288-1297
    • Burr, T.J.1    Bazzi, C.2    Sule, S.3    Otten, L.4
  • 8
    • 0343353451 scopus 로고
    • Populations of Agrobacterium in vineyard and non-vineyards soils and grape roots in vineyards and nurseries
    • Burr, T.J., B.H. Katz, and A.L. Bishop. 1987. Populations of Agrobacterium in vineyard and non-vineyards soils and grape roots in vineyards and nurseries. Plant Dis. 71:617-620.
    • (1987) Plant Dis , vol.71 , pp. 617-620
    • Burr, T.J.1    Katz, B.H.2    Bishop, A.L.3
  • 9
    • 0032928451 scopus 로고    scopus 로고
    • A simple and efficient PCR method for the detection of Agrobacterium tumefaciens in plant tumors
    • Cubero, J., M.C. Martinez, P. Llop, and M.M. Lopez. 1999. A simple and efficient PCR method for the detection of Agrobacterium tumefaciens in plant tumors. J. Appl. Microbiol. 86:591-602.
    • (1999) J. Appl. Microbiol , vol.86 , pp. 591-602
    • Cubero, J.1    Martinez, M.C.2    Llop, P.3    Lopez, M.M.4
  • 10
    • 0000336414 scopus 로고
    • Use of the polymerase chain reaction to detect pathogenic strains of Agrobacterium
    • Dong, L.C., C.W. Sun, K.L. Thies, D.S. Luthe, and C.H. Graves. 1992. Use of the polymerase chain reaction to detect pathogenic strains of Agrobacterium. Phytopathology 82:434-439.
    • (1992) Phytopathology , vol.82 , pp. 434-439
    • Dong, L.C.1    Sun, C.W.2    Thies, K.L.3    Luthe, D.S.4    Graves, C.H.5
  • 11
    • 0028868230 scopus 로고
    • A rapid and sensitive method to detect Agrobacterium vitis in grapevine cuttings using the polymerase chain reaction
    • Eastwell, K.C., L.G. Willis, and T.D. Cavileer. 1995. A rapid and sensitive method to detect Agrobacterium vitis in grapevine cuttings using the polymerase chain reaction. Plant Dis. 79:822-827.
    • (1995) Plant Dis , vol.79 , pp. 822-827
    • Eastwell, K.C.1    Willis, L.G.2    Cavileer, T.D.3
  • 12
    • 33745917383 scopus 로고    scopus 로고
    • Genetic diversity of Agrobacterium vitis strains isolated from grapevines and wild grapes in Bulgaria, assessed by cleaved amplified polymorphic sequences analysis of 16S-23S rDNA
    • Genov, I., I. Atanassov, Y. Yordanov, I. Tsvetkov, and A. Atanassov. 2006. Genetic diversity of Agrobacterium vitis strains isolated from grapevines and wild grapes in Bulgaria, assessed by cleaved amplified polymorphic sequences analysis of 16S-23S rDNA. Vitis 45:125-130.
    • (2006) Vitis , vol.45 , pp. 125-130
    • Genov, I.1    Atanassov, I.2    Yordanov, Y.3    Tsvetkov, I.4    Atanassov, A.5
  • 13
    • 0029143069 scopus 로고
    • Universal PCR primers for detection of phytopathogenic Agrobacterium strains
    • Haas, J.H., L.W. Moore, W. Ream, and S. Manulis. 1995. Universal PCR primers for detection of phytopathogenic Agrobacterium strains. Appl. Environ. Microbiol. 61:2869-2884.
    • (1995) Appl. Environ. Microbiol , vol.61 , pp. 2869-2884
    • Haas, J.H.1    Moore, L.W.2    Ream, W.3    Manulis, S.4
  • 14
    • 0029803065 scopus 로고    scopus 로고
    • Isolation of Agrobacterium vitis from grapevine propagating material by means of PCR after immunocapture cultivation
    • Kauffmann, M., H.H. Kassemeyer, and L. Otten. 1996. Isolation of Agrobacterium vitis from grapevine propagating material by means of PCR after immunocapture cultivation. Vitis 35:151-153.
    • (1996) Vitis , vol.35 , pp. 151-153
    • Kauffmann, M.1    Kassemeyer, H.H.2    Otten, L.3
  • 15
    • 18444396915 scopus 로고    scopus 로고
    • Multiplex PCR for the identification of Agrobacterium biovar 3 strains
    • Kawaguchi, A., H. Sawada, K. Inoue, and H. Nasu. 2005. Multiplex PCR for the identification of Agrobacterium biovar 3 strains. J. Gen. Plant Pathol. 71:54-59.
    • (2005) J. Gen. Plant Pathol , vol.71 , pp. 54-59
    • Kawaguchi, A.1    Sawada, H.2    Inoue, K.3    Nasu, H.4
  • 16
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 17
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stackebrandt and M. Goodfellow (eds, Wiley & Sons, New York
    • Lane, D.J. 1991. 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics. E. Stackebrandt and M. Goodfellow (eds.), pp. 115-175. Wiley & Sons, New York.
    • (1991) Nucleic Acid Techniques In Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 18
    • 67650102594 scopus 로고    scopus 로고
    • Novel SCAR primers for specific and sensitive detection of Agrobacterium vitis strains
    • Lim, S.H., J.G. Kim, and H.W. Kang. 2009. Novel SCAR primers for specific and sensitive detection of Agrobacterium vitis strains. Microbiol. Res. 164:451-460.
    • (2009) Microbiol. Res , vol.164 , pp. 451-460
    • Lim, S.H.1    Kim, J.G.2    Kang, H.W.3
  • 20
    • 21144435285 scopus 로고    scopus 로고
    • Spread of levan-positive populations of Pseudomonas savastanoi pv. savastanoi, the causal agent of olive knot, in central Italy
    • Marchi, G., C. Viti, L. Giovannetti, and G. Surico. 2005. Spread of levan-positive populations of Pseudomonas savastanoi pv. savastanoi, the causal agent of olive knot, in central Italy. Eur. J. Plant Pathol. 112:101-112.
    • (2005) Eur. J. Plant Pathol , vol.112 , pp. 101-112
    • Marchi, G.1    Viti, C.2    Giovannetti, L.3    Surico, G.4
  • 21
    • 0031758001 scopus 로고    scopus 로고
    • Genetic diversity of Agrobacterium vitis as determined by DNA fingerprints of the 5'-end of the 23S rRNA gene and random amplified polymorphic DNA
    • Momol, E.A., T.J. Burr, C.L. Reid, M.T. Momol, S.H. Hseu, and L. Otten. 1998. Genetic diversity of Agrobacterium vitis as determined by DNA fingerprints of the 5'-end of the 23S rRNA gene and random amplified polymorphic DNA. J. Appl. Microbiol. 85:685-692.
    • (1998) J. Appl. Microbiol , vol.85 , pp. 685-692
    • Momol, E.A.1    Burr, T.J.2    Reid, C.L.3    Momol, M.T.4    Hseu, S.H.5    Otten, L.6
  • 22
    • 0025369844 scopus 로고
    • Agrobacterium vitis, new species for strains of Agrobacterium tumefaciens biovar 3 from grapevines
    • Ophel, K., and A. Kerr. 1990. Agrobacterium vitis, new species for strains of Agrobacterium tumefaciens biovar 3 from grapevines. Int. J. Syst. Bacteriol. 40:236-241.
    • (1990) Int. J. Syst. Bacteriol , vol.40 , pp. 236-241
    • Ophel, K.1    Kerr, A.2
  • 23
    • 84900892761 scopus 로고    scopus 로고
    • Agrobacterium: A disease-causing bacterium
    • T. Tzfira and V. Citovsky (eds.), Springer, New York
    • Otten, L., T.J. Burr, and E. Szegedi. 2008. Agrobacterium: A disease-causing bacterium. In Agrobacterium: From Biology to Biotechnology. T. Tzfira and V. Citovsky (eds.), pp. 1-46. Springer, New York.
    • (2008) Agrobacterium: From Biology to Biotechnology , pp. 1-46
    • Otten, L.1    Burr, T.J.2    Szegedi, E.3
  • 24
    • 0028186046 scopus 로고
    • Using the FASTA program to search protein and DNA sequence databases
    • Pearson, W.R. 1994. Using the FASTA program to search protein and DNA sequence databases. Meth. Mol. Biol. 24:307-331.
    • (1994) Meth. Mol. Biol , vol.24 , pp. 307-331
    • Pearson, W.R.1
  • 25
    • 14844290303 scopus 로고    scopus 로고
    • Development of a semi-nested PCR based method for sensitive detection of tumorigenic Agrobacterium in soil
    • Pulawska, J., and P. Sobiczewski. 2005. Development of a semi-nested PCR based method for sensitive detection of tumorigenic Agrobacterium in soil. J. Appl. Microbiol. 98:710-721.
    • (2005) J. Appl. Microbiol , vol.98 , pp. 710-721
    • Pulawska, J.1    Sobiczewski, P.2
  • 26
    • 33747082326 scopus 로고    scopus 로고
    • Rapid and specific identification of four Agrobacterium species and biovars using multiplex PCR
    • Pulawska, J., A. Willems, and P. Sobiczewski. 2006. Rapid and specific identification of four Agrobacterium species and biovars using multiplex PCR. Syst. Appl. Microbiol. 29:470-479.
    • (2006) Syst. Appl. Microbiol , vol.29 , pp. 470-479
    • Pulawska, J.1    Willems, A.2    Sobiczewski, P.3
  • 27
    • 0000142090 scopus 로고
    • A medium selective for Agrobacterium tumefaciens biotype 3
    • Roy, M.A., and M. Sasser. 1983. A medium selective for Agrobacterium tumefaciens biotype 3. Phytopathology 73:810.
    • (1983) Phytopathology , vol.73 , pp. 810
    • Roy, M.A.1    Sasser, M.2
  • 28
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
    • (1987) Mol. Biol. Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 29
    • 0028872153 scopus 로고
    • PCR detection of Ti and Ri plasmids from phytopathogenic Agrobacterium strains
    • Sawada, H., H. Ieki, and I. Matsuda. 1995. PCR detection of Ti and Ri plasmids from phytopathogenic Agrobacterium strains. Appl. Environ. Microbiol. 61:828-831.
    • (1995) Appl. Environ. Microbiol , vol.61 , pp. 828-831
    • Sawada, H.1    Ieki, H.2    Matsuda, I.3
  • 30
    • 53249141983 scopus 로고
    • Amplification of different marker sequences for identification of Agrobacterium vitis strains
    • Schultz, T.F., D. Lorenz, K.W. Eichhorn, and L. Otten. 1993. Amplification of different marker sequences for identification of Agrobacterium vitis strains. Vitis 32:179-182.
    • (1993) Vitis , vol.32 , pp. 179-182
    • Schultz, T.F.1    Lorenz, D.2    Eichhorn, K.W.3    Otten, L.4
  • 31
    • 0000298165 scopus 로고
    • A plant tumor of bacterial origin
    • Smith, F., and C.O. Townsend. 1907. A plant tumor of bacterial origin. Science 25:671-673.
    • (1907) Science , vol.25 , pp. 671-673
    • Smith, F.1    Townsend, C.O.2
  • 32
    • 0037251108 scopus 로고    scopus 로고
    • Octopine in naturally infected grapevine crown gall tumors
    • Szegedi, E. 2003. Octopine in naturally infected grapevine crown gall tumors. Vitis 42:39-41.
    • (2003) Vitis , vol.42 , pp. 39-41
    • Szegedi, E.1
  • 33
    • 0036219204 scopus 로고    scopus 로고
    • Detection of Agrobacterium vitis by polymerase chain reaction in grapevine bleeding sap after isolation on a semiselective medium
    • Szegedi, E., and S. Bottka. 2002. Detection of Agrobacterium vitis by polymerase chain reaction in grapevine bleeding sap after isolation on a semiselective medium. Vitis 41:37-42.
    • (2002) Vitis , vol.41 , pp. 37-42
    • Szegedi, E.1    Bottka, S.2
  • 34
    • 0344107884 scopus 로고    scopus 로고
    • Investigation of grape shoots for Agrobacterium vitis
    • Szegedi, E., and J. Nemeth. 1996. Investigation of grape shoots for Agrobacterium vitis. Novenyvedelem 32:605-609.
    • (1996) Novenyvedelem , vol.32 , pp. 605-609
    • Szegedi, E.1    Nemeth, J.2
  • 35
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
    • (2007) Mol. Biol. Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 36
    • 0035151030 scopus 로고    scopus 로고
    • A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn 1942 and Allorhizobium undicola de Lajudie et al. 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis
    • Young, J.M., L.D. Kuykendall, E. Martinez-Romero, A. Kerr, and H. Sawada. 2001. A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn 1942 and Allorhizobium undicola de Lajudie et al. 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis. Int. J. Sys. Evol. Microbiol. 51:89-103.
    • (2001) Int. J. Sys. Evol. Microbiol , vol.51 , pp. 89-103
    • Young, J.M.1    Kuykendall, L.D.2    Martinez-Romero, E.3    Kerr, A.4    Sawada, H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.