메뉴 건너뛰기




Volumn 125, Issue 3-6, 2010, Pages 345-352

The mechanisms of excited states in enzymes

Author keywords

Barrier heights; Enzyme kinetics; Excited states

Indexed keywords


EID: 77949275264     PISSN: 1432881X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00214-009-0589-x     Document Type: Article
Times cited : (1)

References (61)
  • 2
    • 0002634919 scopus 로고
    • The transition state method
    • Wigner E (1938) The transition state method. Trans Faraday Soc 34: 29-41.
    • (1938) Trans Faraday Soc , vol.34 , pp. 29-41
    • Wigner, E.1
  • 3
    • 0000923690 scopus 로고    scopus 로고
    • Performance of density functional theory on the potential-energy surface of the h + ocs system
    • Rice BM, Pai SV, Chabalowski CF (1998) Performance of density functioal theory on the potential-energy surface of the h + ocs system. J Phys Chem A 102: 6950-6956.
    • (1998) J Phys Chem A , vol.102 , pp. 6950-6956
    • Rice, B.M.1    Pai, S.V.2    Chabalowski, C.F.3
  • 6
    • 0000205312 scopus 로고    scopus 로고
    • Enzyme catalysis: Beyond classical paradigms
    • Kohen A, KPJ (1998) Enzyme catalysis: beyond classical paradigms. Acc Chem Res 31: 397-404.
    • (1998) Acc Chem Res , vol.31 , pp. 397-404
    • Kohen, A.1    Kpj2
  • 7
    • 33846391519 scopus 로고    scopus 로고
    • Evidence of auger-like transitions in repair stage of ultraviolet-mutated DNA
    • Bohr HG, Malik FB (2007) Evidence of auger-like transitions in repair stage of ultraviolet-mutated DNA. Phys Lett A 362: 460-462.
    • (2007) Phys Lett A , vol.362 , pp. 460-462
    • Bohr, H.G.1    Malik, F.B.2
  • 8
    • 77949262899 scopus 로고    scopus 로고
    • Excited electronic state processes in large bio-molecules, modus operandi
    • In: Belkacem M, Dinh PM (eds)., chap 8. Nova, New York
    • Bohr H, Nielsen HB (2005) Excited electronic state processes in large bio-molecules, modus operandi. In: Belkacem M, Dinh PM (eds) Condensed matter theories, vol 19, chap 8. Nova, New York, pp 93-104.
    • (2005) Condensed matter theories , vol.19 , pp. 93-104
    • Bohr, H.1    Nielsen, H.B.2
  • 9
    • 0000262602 scopus 로고
    • Two forms of chlorophyll a in vivo with distinct photochemical functions
    • Govindjee, Rabinowitch E (1960) Two forms of chlorophyll a in vivo with distinct photochemical functions. Science 132: 355-356.
    • (1960) Science , vol.132 , pp. 355-356
    • Govindjee, R.1    Rabinowitch, E.2
  • 10
    • 0034214080 scopus 로고    scopus 로고
    • Intraprotein radical transfer during photoactivation of DNA photolyase
    • Aubert C, Vos MH, Mathis P, Eker AP, Brettel K (2000) Intraprotein radical transfer during photoactivation of DNA photolyase. Nature 405: 586-590.
    • (2000) Nature , vol.405 , pp. 586-590
    • Aubert, C.1    Vos, M.H.2    Mathis, P.3    Eker, A.P.4    Brettel, K.5
  • 11
    • 23744464776 scopus 로고    scopus 로고
    • Light and oxygenic photosynthesis: Energy dissipation as a protection mechanism against photo-oxidation
    • Szabo I, Bergantino E, Giacometti GM (2005) Light and oxygenic photosynthesis: energy dissipation as a protection mechanism against photo-oxidation. EMBO Rep 6: 629-634.
    • (2005) EMBO Rep , vol.6 , pp. 629-634
    • Szabo, I.1    Bergantino, E.2    Giacometti, G.M.3
  • 14
    • 0028931265 scopus 로고
    • Principles of CDK regulation
    • Morgan DO (1995) Principles of CDK regulation. Nature 374: 131-134.
    • (1995) Nature , vol.374 , pp. 131-134
    • Morgan, D.O.1
  • 15
    • 36749105199 scopus 로고
    • Group theoretical approach to the configuration interaction and perturbation theory calculations for atomic and molecular systems
    • Paldus J (1974) Group theoretical approach to the configuration interaction and perturbation theory calculations for atomic and molecular systems. J Chem Phys 61: 5321-5330.
    • (1974) J Chem Phys , vol.61 , pp. 5321-5330
    • Paldus, J.1
  • 16
    • 36849099976 scopus 로고
    • On the correlation problem in atomic and molecular systems. calculation of wavefunction components in ursell-type expansion using quantum-field theoretical methods
    • Cizek J (1966) On the correlation problem in atomic and molecular systems. calculation of wavefunction components in ursell-type expansion using quantum-field theoretical methods. J Chem Phys 45: 4256-4266.
    • (1966) J Chem Phys , vol.45 , pp. 4256-4266
    • Cizek, J.1
  • 17
    • 0012597289 scopus 로고
    • Density-functional theory for time-dependent systems
    • Runge E, Gross EKU (1984) Density-functional theory for time-dependent systems. Phys Rev Lett 52: 997-1000.
    • (1984) Phys Rev Lett , vol.52 , pp. 997-1000
    • Runge, E.1    Gross, E.K.U.2
  • 18
    • 0000533004 scopus 로고
    • Coupled-cluster approach to molecular structure and spectra: A step toward predictive quantum chemistry
    • Bartlett RJ (1989) Coupled-cluster approach to molecular structure and spectra: a step toward predictive quantum chemistry. J Phys Chem 93: 1697-1708.
    • (1989) J Phys Chem , vol.93 , pp. 1697-1708
    • Bartlett, R.J.1
  • 19
    • 18744378855 scopus 로고    scopus 로고
    • Ab initio quantum chemistry: Methodology and applications
    • Friesner RA (2005) Ab initio quantum chemistry: methodology and applications. Proc Natl Acad Sci USA 102: 6648-6653.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 6648-6653
    • Friesner, R.A.1
  • 20
    • 1242332312 scopus 로고    scopus 로고
    • Size extensive modification of local multireference configuration interaction
    • Venkatnathan A, Szilva AB, Walter D, Gdanitz RJ, Carter EA (2004) Size extensive modification of local multireference configuration interaction. J Chem Phys 120: 1693-1704.
    • (2004) J Chem Phys , vol.120 , pp. 1693-1704
    • Venkatnathan, A.1    Szilva, A.B.2    Walter, D.3    Gdanitz, R.J.4    Carter, E.A.5
  • 22
    • 0032533083 scopus 로고    scopus 로고
    • An efficient implementation of time-dependent density-functional theory for the calculation of excited energies of large molecules
    • Stratmann RE, Scuseria GE, Frisch MJ (1998) An efficient implementation of time-dependent density-functional theory for the calculation of excited energies of large molecules. J Chem Phys 109: 8218-8224.
    • (1998) J Chem Phys , vol.109 , pp. 8218-8224
    • Stratmann, R.E.1    Scuseria, G.E.2    Frisch, M.J.3
  • 24
    • 4243539377 scopus 로고
    • Electronic structure calculations on workstation computers: The program system turbomole
    • Ahlrichs R, Bar M, Haser M, Horn H, Kolmel C (1989) Electronic structure calculations on workstation computers: the program system turbomole. Chem Phys Lett 162: 165-169.
    • (1989) Chem Phys Lett , vol.162 , pp. 165-169
    • Ahlrichs, R.1    Bar, M.2    Haser, M.3    Horn, H.4    Kolmel, C.5
  • 25
    • 0035111450 scopus 로고    scopus 로고
    • High-level multireference methods in the quantum-chemistry program system columbus: Analytis mr-cisd and mr-aqcc gradient and mr-aqcc-lrt for excited states, guga spin-orbit ci and parallel ci density
    • Lischkam H, Shepard R, Pitzer RM, Shavitt I, Dallos M, Muller T, Szalay PG, Seth M, Kedziora GS (2001) High-level multireference methods in the quantum-chemistry program system columbus: analysis mr-cisd and mr-aqcc gradient and mr-aqcc-lrt for excited states, guga spin-orbit ci and parallel ci density. Phys Chem Chem Phys 3: 664-673.
    • (2001) Phys Chem Chem Phys , vol.3 , pp. 664-673
    • Lischkam, H.1    Shepard, R.2    Pitzer, R.M.3    Shavitt, I.4    Dallos, M.5    Muller, T.6    Szalay, P.G.7    Seth, M.8    Kedziora, G.S.9
  • 27
    • 13844256579 scopus 로고    scopus 로고
    • Light-driven enzymatic catalysis of DNA repair: A review of recent biophysical studies on photolyase
    • Weber S (2005) Light-driven enzymatic catalysis of DNA repair: a review of recent biophysical studies on photolyase. Biochimica et Biophysica Acta (Bioenergetics) 1707: 1-23.
    • (2005) Biochimica Et Biophysica Acta (Bioenergetics) , vol.1707 , pp. 1-23
    • Weber, S.1
  • 28
    • 12944273297 scopus 로고    scopus 로고
    • Dark structures in molecular radiationless transitions determined by ultrafast diffraction
    • Srinivasen R, Feenstra JS, Park ST, Xu S, Zewail AH (2005) Dark structures in molecular radiationless transitions determined by ultrafast diffraction. Science 307: 558-563.
    • (2005) Science , vol.307 , pp. 558-563
    • Srinivasen, R.1    Feenstra, J.S.2    Park, S.T.3    Xu, S.4    Zewail, A.H.5
  • 29
    • 0036363666 scopus 로고    scopus 로고
    • Imaging of light emission from the expression of luciferases in living cells and organisms: A review
    • Greer LFr, Szalay AA (2002) Imaging of light emission from the expression of luciferases in living cells and organisms: a review. Luminescence 17: 43-74.
    • (2002) Luminescence , vol.17 , pp. 43-74
    • Greer, L.1    Szalay, A.A.2
  • 30
    • 0021077237 scopus 로고
    • Biological diversity, chemical mechanisms, and the evolutionary origins of bioluminescent systems
    • Hastings JW (1983) Biological diversity, chemical mechanisms, and the evolutionary origins of bioluminescent systems. J Mol Evol 19(5): 309-321.
    • (1983) J Mol Evol , vol.19 , Issue.5 , pp. 309-321
    • Hastings, J.W.1
  • 32
    • 0002313888 scopus 로고
    • Bioluminescence of the firefly: Key steps in the formation of the electronically excited state for model systems
    • Koo JA, Schmidt SP, Schuster GB (1978) Bioluminescence of the firefly: key steps in the formation of the electronically excited state for model systems. Proc Natl Acad Sci USA 75: 30-33.
    • (1978) Proc Natl Acad Sci USA , vol.75 , pp. 30-33
    • Koo, J.A.1    Schmidt, S.P.2    Schuster, G.B.3
  • 36
    • 18244397526 scopus 로고
    • A theory of sentized luminescence in solids
    • Dexter DL (1953) A theory of sentized luminescence in solids. J Chem Phys 21: 836-850.
    • (1953) J Chem Phys , vol.21 , pp. 836-850
    • Dexter, D.L.1
  • 37
    • 84981779372 scopus 로고
    • Zwischenmolekulare energiewanderung und fluoreszenz
    • Förster T (1948) Zwischenmolekulare energiewanderung und fluoreszenz. Ann Phys (Leipzig) 2: 55-75.
    • (1948) Ann Phys (Leipzig) , vol.2 , pp. 55-75
    • Förster, T.1
  • 38
    • 0000873587 scopus 로고    scopus 로고
    • Multidimensional femtosecond correlation spectroscopies of electronic and vibrational excitations
    • Mukamel S (2000) Multidimensional femtosecond correlation spectroscopies of electronic and vibrational excitations. Annu Rev Phys Chem 51: 691-729.
    • (2000) Annu Rev Phys Chem , vol.51 , pp. 691-729
    • Mukamel, S.1
  • 39
    • 0034912671 scopus 로고    scopus 로고
    • Radical mechanisms of enzymatic catalysis
    • Frey PA (2001) Radical mechanisms of enzymatic catalysis. Annu Rev Biochem 70: 121-148.
    • (2001) Annu Rev Biochem , vol.70 , pp. 121-148
    • Frey, P.A.1
  • 41
    • 0035808702 scopus 로고    scopus 로고
    • Amino acid residues involved in the coordination and assembly of the manganese cluster of photosystem II. Proton-coupled electron transport of the redox-active tyrosines and its relationship to water oxidation
    • Diner BA (2001) Amino acid residues involved in the coordination and assembly of the manganese cluster of photosystem II. Proton-coupled electron transport of the redox-active tyrosines and its relationship to water oxidation. Biochim Biophys Acta 1503: 147-163.
    • (2001) Biochim Biophys Acta , vol.1503 , pp. 147-163
    • Diner, B.A.1
  • 42
  • 43
    • 36449005418 scopus 로고
    • Proton transfer in solution: Molecular dynamics with quantum transitions
    • Hammes-Schiffer S, Tully J (1994) Proton transfer in solution: Molecular dynamics with quantum transitions. J Chem Phys 101: 4657-4667.
    • (1994) J Chem Phys , vol.101 , pp. 4657-4667
    • Hammes-Schiffer, S.1    Tully, J.2
  • 44
    • 11744276220 scopus 로고    scopus 로고
    • Mixed quantum/classical dynamics of hydrogen transfer reactions
    • Hammes-Schiffer S (1998) Mixed quantum/classical dynamics of hydrogen transfer reactions. J Phys Chem A 102: 10443-10454.
    • (1998) J Phys Chem A , vol.102 , pp. 10443-10454
    • Hammes-Schiffer, S.1
  • 45
    • 0034300544 scopus 로고    scopus 로고
    • Fourier grid hamiltonian multiconfigurational self-consistent field: A method to calculate multidimensional hydrogen vibrational wavefunctions
    • Webb SP, Hammes-Schiffer S (2000) Fourier grid hamiltonian multiconfigurational self-consistent field: a method to calculate multidimensional hydrogen vibrational wavefunctions. J Chem Phys 113: 5514-5227.
    • (2000) J Chem Phys , vol.113 , pp. 5514-5227
    • Webb, S.P.1    Hammes-Schiffer, S.2
  • 46
    • 0016273342 scopus 로고
    • Electron transfer between biological molecules by thermally activated tunneling
    • Hopfield JJ (1974) Electron transfer between biological molecules by thermally activated tunneling. PNAS 71: 3640-3644.
    • (1974) Pnas , vol.71 , pp. 3640-3644
    • Hopfield, J.J.1
  • 47
    • 36749105258 scopus 로고
    • Temperature-dependent activation energy for electron transfer between biological molecules
    • Jortner J (1976) Temperature dependent activation energy for electron transfer between biological molecules. J Chem Phys 64: 4860-4867.
    • (1976) J Chem Phys , vol.64 , pp. 4860-4867
    • Jortner, J.1
  • 48
    • 0017757966 scopus 로고
    • Conformational dynamics in biological electron and atom transfer reactions
    • Dogonadze RR, Kuznetsov AM, Ulstrup J (1977) Conformational dynamics in biological electron and atom transfer reactions. J Theor Biol 69: 239-263.
    • (1977) J Theor Biol , vol.69 , pp. 239-263
    • Dogonadze, R.R.1    Kuznetsov, A.M.2    Ulstrup, J.3
  • 49
    • 13044304431 scopus 로고
    • Molecular dynamics with electronic transitions
    • Tully J (1990) Molecular dynamics with electronic transitions. J Chem Phys 93: 1061-1071.
    • (1990) J Chem Phys , vol.93 , pp. 1061-1071
    • Tully, J.1
  • 50
    • 0014035057 scopus 로고
    • Function and structure of liver alcohol dehydrogenase
    • Theorell H (1967) Function and structure of liver alcohol dehydrogenase. Harvey Lect 61: 17-41.
    • (1967) Harvey Lect , vol.61 , pp. 17-41
    • Theorell, H.1
  • 51
    • 0035870566 scopus 로고    scopus 로고
    • Hybrid approach for including electronic and nuclear quantum effects in molecular dynamics simulations of hydrogen transfer reactions in enzymes
    • Billeter SR, Webb SP, Iordanov I, Agarwal PK, Hammes-Schiffer S (2001) Hybrid approach for including electronic and nuclear quantum effects in molecular dynamics simulations of hydrogen transfer reactions in enzymes. J Chem Phys 114: 6925-6936.
    • (2001) J Chem Phys , vol.114 , pp. 6925-6936
    • Billeter, S.R.1    Webb, S.P.2    Iordanov, I.3    Agarwal, P.K.4    Hammes-Schiffer, S.5
  • 52
    • 0037188007 scopus 로고    scopus 로고
    • Nuclear quantum effects and enzyme dynamics in dihydrofolate reductase catalysis
    • Agarwal PK, Billeter SR, Hammes-Schiffer S (2002) Nuclear quantum effects and enzyme dynamics in dihydrofolate reductase catalysis. J Phys Chem 106: 3283-3293.
    • (2002) J Phys Chem , vol.106 , pp. 3283-3293
    • Agarwal, P.K.1    Billeter, S.R.2    Hammes-Schiffer, S.3
  • 53
    • 55949133164 scopus 로고    scopus 로고
    • Excited state processes in photosynthetic molecules
    • Bohr H, Greisen PJ, Malic B (2008) Excited state processes in photosynthetic molecules. Intern J Mod Phys B 22: 4617-4626.
    • (2008) Intern J Mod Phys B , vol.22 , pp. 4617-4626
    • Bohr, H.1    Greisen, P.J.2    Malic, B.3
  • 55
    • 20844457139 scopus 로고    scopus 로고
    • Electronic pathways in photoactivated repair of UV-mutated DNA
    • Bohr HG, Jalkanen KJ, Malik FB (2005) Electronic pathways in photoactivated repair of UV-mutated DNA. Mod Phys Lett B 19: 473-487.
    • (2005) Mod Phys Lett B , vol.19 , pp. 473-487
    • Bohr, H.G.1    Jalkanen, K.J.2    Malik, F.B.3
  • 57
    • 10044280323 scopus 로고    scopus 로고
    • Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair
    • Mees A, Klar T, Gnau P, Hennecke U, Eker APM, Carell T, Essen L-O (2004) Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair. Science 306: 1789-1793.
    • (2004) Science , vol.306 , pp. 1789-1793
    • Mees, A.1    Klar, T.2    Gnau, P.3    Hennecke, U.4    Eker, A.P.M.5    Carell, T.6    Essen, L.-O.7
  • 58
    • 0030937641 scopus 로고    scopus 로고
    • Electronic energy in DNA photolyase: A molecular orbital study
    • Heelis PF (1997) Electronic energy in DNA photolyase: a molecular orbital study. J Photochem Photobiol B 38: 31-34.
    • (1997) J Photochem Photobiol B , vol.38 , pp. 31-34
    • Heelis, P.F.1
  • 59
    • 28444469286 scopus 로고    scopus 로고
    • Interfacial tryptophan residues: A role for the cation-pi effect?
    • Petersen FN, Jensen MO, Nielsen CH (2005) Interfacial tryptophan residues: a role for the cation-pi effect?. Biophys J 89: 3985-3996.
    • (2005) Biophys J , vol.89 , pp. 3985-3996
    • Petersen, F.N.1    Jensen, M.O.2    Nielsen, C.H.3
  • 61
    • 34548232222 scopus 로고    scopus 로고
    • Effects of metal cation coordination on fluorescence properties of a diethylenetriamine bearing two end pyrene fragments
    • Shiraishi Y, Ishizumi K, Nishimura G, Takayuki H (2007) Effects of metal cation coordination on fluorescence properties of a diethylenetriamine bearing two end pyrene fragments. J Phys Chem B 111: 8812-8822.
    • (2007) J Phys Chem B , vol.111 , pp. 8812-8822
    • Shiraishi, Y.1    Ishizumi, K.2    Nishimura, H.3    Takayuki, H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.