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Volumn 125, Issue 3-6, 2010, Pages 217-231

Rigid assembly and Monte Carlo models of stable and unstable chromatin structures: The effect of nucleosomal spacing

Author keywords

Chromatin fiber; Elasticity; Monte Carlo simulation; Quantization; Repeat length; Rigid assembly model

Indexed keywords


EID: 77949273982     PISSN: 1432881X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00214-009-0561-9     Document Type: Article
Times cited : (10)

References (50)
  • 1
    • 0015964401 scopus 로고
    • Spheroid chromatin units (v bodies)
    • doi:10.1126/science.183.4122.330
    • Olins AL, Olins DE (1974) Spheroid chromatin units (v bodies). Science 183: 330-332. doi: 10. 1126/science. 183. 4122. 330.
    • (1974) Science , vol.183 , pp. 330-332
    • Olins, A.L.1    Olins, D.E.2
  • 2
    • 0016221697 scopus 로고
    • Chromatin structure: A repeating unit of histones and DNA
    • doi:10.1126/science.184.4139.868
    • Kornberg RD (1974) Chromatin structure: a repeating unit of histones and DNA. Science 184: 868-871. doi: 10. 1126/science. 184. 4139. 868.
    • (1974) Science , vol.184 , pp. 868-871
    • Kornberg, R.D.1
  • 3
    • 0025837183 scopus 로고
    • The nucleosomal core histone octamer at 3.1 Å resolution: A triparatite protein assembly and a left-handed superhelix
    • doi:10.1073/pnas.88.22.10148
    • Arents G, Burlingame RW, Wang B-C, Love WE, Moudrianakis EN (1991) The nucleosomal core histone octamer at 3. 1 Å resolution: a triparatite protein assembly and a left-handed superhelix. Proc Natl Acad Sci USA 88: 10148-10152. doi: 10. 1073/pnas. 88. 22. 10148.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 10148-10152
    • Arents, G.1    Burlingame, R.W.2    Wang, B.-C.3    Love, W.E.4    Moudrianakis, E.N.5
  • 4
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 Å resolution
    • doi:10.1038/38444
    • Luger K, Mäder AW, Richmond RK, Sargent DF, Richmond TJ (1997) Crystal structure of the nucleosome core particle at 2. 8 Å resolution. Nature 389: 251-260. doi: 10. 1038/38444.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mäder, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 6
    • 0000878535 scopus 로고
    • Solenoidal model for superstructure in chromatin
    • doi:10.1073/pnas.73.6.1897
    • Finch JT, Klug A (1976) Solenoidal model for superstructure in chromatin. Proc Natl Acad Sci USA 73: 1897-1901. doi: 10. 1073/pnas. 73. 6. 1897.
    • (1976) Proc Natl Acad Sci USA , vol.73 , pp. 1897-1901
    • Finch, J.T.1    Klug, A.2
  • 7
    • 0018581187 scopus 로고
    • Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin
    • doi:10.1083/jcb.83.2.403
    • Thoma F, Koller T, Klug A (1979) Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin. J Cell Biol 83: 403-427. doi: 10. 1083/jcb. 83. 2. 403.
    • (1979) J Cell Biol , vol.83 , pp. 403-427
    • Thoma, F.1    Koller, T.2    Klug, A.3
  • 8
    • 0020645755 scopus 로고
    • Higher order structure of chromatin: Orientation of nucleosomes within the 30 nm chromatin solenoid is independent of species and spacer length
    • doi:10.1016/0092-8674(83)90025-9
    • McGhee JD, Nickol JM, Felsenfeld G, Rau DC (1983) Higher order structure of chromatin: orientation of nucleosomes within the 30 nm chromatin solenoid is independent of species and spacer length. Cell 33: 831-841. doi: 10. 1016/0092-8674(83)90025-9.
    • (1983) Cell , vol.33 , pp. 831-841
    • McGhee, J.D.1    Nickol, J.M.2    Felsenfeld, G.3    Rau, D.C.4
  • 9
    • 0022273023 scopus 로고
    • Structure of the 300A chromatin filament: X-ray diffraction from oriented samples
    • doi:10.1016/0092-8674(85)90025-X
    • Widom J, Klug A (1985) Structure of the 300A chromatin filament: X-ray diffraction from oriented samples. Cell 43: 207-213. doi: 10. 1016/0092-8674(85)90025-X.
    • (1985) Cell , vol.43 , pp. 207-213
    • Widom, J.1    Klug, A.2
  • 10
    • 0021250785 scopus 로고
    • The higher-order structure of chromatin: Evidence for a helical ribbon arrangement
    • doi:10.1083/jcb.99.1.42
    • Woodcock CL, Frado LL, Rattner JB (1984) The higher-order structure of chromatin: evidence for a helical ribbon arrangement. J Cell Biol 99: 42-52. doi: 10. 1083/jcb. 99. 1. 42.
    • (1984) J Cell Biol , vol.99 , pp. 42-52
    • Woodcock, C.L.1    Frado, L.L.2    Rattner, J.B.3
  • 11
    • 0027517831 scopus 로고
    • A chromatin folding model that incorporates linker variability generates fibers resembling the native structures
    • doi:10.1073/pnas.90.19.9021
    • Woodcock CL, Grigoryev SA, Horowitz RA, Whitaker N (1993) A chromatin folding model that incorporates linker variability generates fibers resembling the native structures. Proc Natl Acad Sci USA 90: 9021-9025. doi: 10. 1073/pnas. 90. 19. 9021.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 9021-9025
    • Woodcock, C.L.1    Grigoryev, S.A.2    Horowitz, R.A.3    Whitaker, N.4
  • 12
    • 0029780079 scopus 로고    scopus 로고
    • What determines the folding of the chromatin fiber
    • doi:10.1073/pnas.93.20.10548
    • van Holde K, Zlatanova J (1996) What determines the folding of the chromatin fiber. Proc Natl Acad Sci USA 93: 10548-10555. doi: 10. 1073/pnas. 93. 20. 10548.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 10548-10555
    • van Holde, K.1    Zlatanova, J.2
  • 13
    • 0029115144 scopus 로고
    • Probing the conformation of nucleosome linker DNA in situ with pyrimidine dimer formation
    • Pehrson JR (1995) Probing the conformation of nucleosome linker DNA in situ with pyrimidine dimer formation. J Biol Chem 270: 22440-22444.
    • (1995) J Biol Chem , vol.270 , pp. 22440-22444
    • Pehrson, J.R.1
  • 14
    • 0031957859 scopus 로고    scopus 로고
    • A topological approach to nucleosome structure and dynamics: The linking number paradox and other issues
    • doi:10.1016/S0006-3495(98)77961-5
    • Prunell A (1998) A topological approach to nucleosome structure and dynamics: the linking number paradox and other issues. Biophys J 74: 2531-2544. doi: 10. 1016/S0006-3495(98)77961-5.
    • (1998) Biophys J , vol.74 , pp. 2531-2544
    • Prunell, A.1
  • 15
    • 0032564478 scopus 로고    scopus 로고
    • Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin
    • doi:10.1073/pnas.95.24.14173
    • Bednar J, Horowitz RA, Grigoryev SA, Carruthers LM, Hansen JC, Koster AJ, Woodcock CL (1998) Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin. Proc Natl Acad Sci USA 95: 14173-14178. doi: 10. 1073/pnas. 95. 24. 14173.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 14173-14178
    • Bednar, J.1    Horowitz, R.A.2    Grigoryev, S.A.3    Carruthers, L.M.4    Hansen, J.C.5    Koster, A.J.6    Woodcock, C.L.7
  • 16
    • 0032553448 scopus 로고    scopus 로고
    • Chromatin conformation in living cells: Support for a zig-zag model of the 30 nm chromatin fiber
    • doi:10.1006/jmbi.1998.2150
    • Rydberg B, Holley WR, Mian IS, Chatterjee A (1998) Chromatin conformation in living cells: support for a zig-zag model of the 30 nm chromatin fiber. J Mol Biol 284: 71-84. doi: 10. 1006/jmbi. 1998. 2150.
    • (1998) J Mol Biol , vol.284 , pp. 71-84
    • Rydberg, B.1    Holley, W.R.2    Mian, I.S.3    Chatterjee, A.4
  • 17
    • 9444297879 scopus 로고    scopus 로고
    • Nucleosome arrays reveal the two-start organization of the chromatin fiber
    • doi:10.1126/science.1103124
    • Dorigo B, Schalch T, Kulangara A, Duda S, Schroeder RR, Richmond TJ (2004) Nucleosome arrays reveal the two-start organization of the chromatin fiber. Science 306: 1571-1573. doi: 10. 1126/science. 1103124.
    • (2004) Science , vol.306 , pp. 1571-1573
    • Dorigo, B.1    Schalch, T.2    Kulangara, A.3    Duda, S.4    Schroeder, R.R.5    Richmond, T.J.6
  • 18
    • 21844436803 scopus 로고    scopus 로고
    • X-ray structure of a tetranucleosome and its implications for the chromatin fibre
    • doi:10.1038/nature03686
    • Schalch T, Duda S, Sargent DF, Richmond TJ (2005) X-ray structure of a tetranucleosome and its implications for the chromatin fibre. Nature 436: 138-141. doi: 10. 1038/nature03686.
    • (2005) Nature , vol.436 , pp. 138-141
    • Schalch, T.1    Duda, S.2    Sargent, D.F.3    Richmond, T.J.4
  • 19
    • 0021985925 scopus 로고
    • A triple helix model for the structure of chromatin fiber
    • doi:10.1016/0014-5793(85)80292-1
    • Makarov V, Dimitrov S, Smirnov V, Pashev I (1985) A triple helix model for the structure of chromatin fiber. FEBS Lett 181: 357-361. doi: 10. 1016/0014-5793(85)80292-1.
    • (1985) FEBS Lett , vol.181 , pp. 357-361
    • Makarov, V.1    Dimitrov, S.2    Smirnov, V.3    Pashev, I.4
  • 20
    • 0035093560 scopus 로고    scopus 로고
    • Computational modeling predicts the structure and dynamics of chromatin fiber
    • doi:10.1016/S0969-2126(01)00572-X
    • Beard DA, Schlick T (2001) Computational modeling predicts the structure and dynamics of chromatin fiber. Structure 9: 105-114. doi: 10. 1016/S0969-2126(01)00572-X.
    • (2001) Structure , vol.9 , pp. 105-114
    • Beard, D.A.1    Schlick, T.2
  • 21
    • 0036099317 scopus 로고    scopus 로고
    • Computer simulation of the 30-nanometer chromatin fiber
    • doi:10.1016/S0006-3495(02)75627-0
    • Wedemann G, Langowski J (2002) Computer simulation of the 30-nanometer chromatin fiber. Biophys J 82: 2847-2859. doi: 10. 1016/S0006-3495(02)75627-0.
    • (2002) Biophys J , vol.82 , pp. 2847-2859
    • Wedemann, G.1    Langowski, J.2
  • 22
    • 34548745169 scopus 로고    scopus 로고
    • Choreography for nucleosomes: The conformational freedom of the nucleosomal filament and its limitations
    • doi:10.1093/nar/gkm560
    • Engelhardt M (2007) Choreography for nucleosomes: the conformational freedom of the nucleosomal filament and its limitations. Nucleic Acids Res 35: e106. doi: 10. 1093/nar/gkm560.
    • (2007) Nucleic Acids Res , vol.35
    • Engelhardt, M.1
  • 23
    • 28744454727 scopus 로고    scopus 로고
    • Theory and computational modeling of the 30 nm chromatin fiber
    • Elsevier, Amsterdam
    • Langowski J, Schiessel H (2004) Theory and computational modeling of the 30 nm chromatin fiber. In: Zlananova J, Leuba SH (eds) Chromatin structure and dynamics: state-of-the-art. Elsevier, Amsterdam, pp 397-420.
    • (2004) Chromatin Structure and Dynamics: State-of-the-art , pp. 397-420
    • Langowski, J.1    Schiessel, H.2
  • 24
    • 0035156429 scopus 로고    scopus 로고
    • Modeling salt-mediated electrostatics of macromolecules: The discrete surface charge optimization algorithm and its application to the nucleosome
    • doi:10.1002/1097-0282(200101)58:1<106::AID-BIP100>3.0.CO;2-#
    • Beard DA, Schlick T (2001) Modeling salt-mediated electrostatics of macromolecules: the discrete surface charge optimization algorithm and its application to the nucleosome. Biopolymers 58: 106-115. doi: 10. 1002/1097-0282(200101)58: 1< 106:: AID-BIP100> 3. 0. CO; 2-#.
    • (2001) Biopolymers , vol.58 , pp. 106-115
    • Beard, D.A.1    Schlick, T.2
  • 25
    • 0037436410 scopus 로고    scopus 로고
    • Chromatin fiber folding: Requirement for the histone H4N-terminal tail
    • doi:10.1016/S0022-2836(03)00025-1
    • Dorigo B, Schalch T, Bystricky K, Richmond TJ (2003) Chromatin fiber folding: requirement for the histone H4N-terminal tail. J Mol Biol 327: 85-96. doi: 10. 1016/S0022-2836(03)00025-1.
    • (2003) J Mol Biol , vol.327 , pp. 85-96
    • Dorigo, B.1    Schalch, T.2    Bystricky, K.3    Richmond, T.J.4
  • 26
    • 0036307707 scopus 로고    scopus 로고
    • Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution
    • doi:10.1016/S0022-2836(02)00386-8
    • Davey CA, Sargent DF, Luger K, Maeder AW, Richmond TJ (2002) Solvent mediated interactions in the structure of the nucleosome core particle at 1. 9 a resolution. J Mol Biol 319: 1097-1113. doi: 10. 1016/S0022-2836(02)00386-8.
    • (2002) J Mol Biol , vol.319 , pp. 1097-1113
    • Davey, C.A.1    Sargent, D.F.2    Luger, K.3    Maeder, A.W.4    Richmond, T.J.5
  • 27
    • 0026517738 scopus 로고
    • A relationship between the helical twist of DNA and the ordered positioning of nucleosomes in all eukaryotic cells
    • doi:10.1073/pnas.89.3.1095
    • Widom J (1992) A relationship between the helical twist of DNA and the ordered positioning of nucleosomes in all eukaryotic cells. Proc Natl Acad Sci USA 89: 1095-1099. doi: 10. 1073/pnas. 89. 3. 1095.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 1095-1099
    • Widom, J.1
  • 29
    • 0028935863 scopus 로고
    • Chromatin higher order structure: Chasing a mirage?
    • doi:10.1074/jbc.270.15.8373
    • van Holde K, Zlatanova J (1995) Chromatin higher order structure: chasing a mirage? J Biol Chem 270: 8373-8376. doi: 10. 1074/jbc. 270. 15. 8373.
    • (1995) J Biol Chem , vol.270 , pp. 8373-8376
    • van Holde, K.1    Zlatanova, J.2
  • 30
    • 33646242052 scopus 로고    scopus 로고
    • EM measurements define the dimensions of the "30-nm" chromatin fiber: Evidence for a compact, interdigitated structure
    • doi:10.1073/pnas.0601212103
    • Robinson PJ, Fairall L, Huynh VA, Rhodes D (2006) EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure. Proc Natl Acad Sci USA 103: 6506-6511. doi: 10. 1073/pnas. 0601212103.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 6506-6511
    • Robinson, P.J.1    Fairall, L.2    Huynh, V.A.3    Rhodes, D.4
  • 31
    • 0020489909 scopus 로고
    • Alignment of nucleosomes along DNA and organization of spacer DNA in Drosophila chromatin
    • doi:10.1093/nar/10.14.4321
    • Karpov VL, Bavykin SG, Preobrazhenskaya OV, Belyavsky AV, Mirzabekov AD (1982) Alignment of nucleosomes along DNA and organization of spacer DNA in Drosophila chromatin. Nucleic Acids Res 10: 4321-4337. doi: 10. 1093/nar/10. 14. 4321.
    • (1982) Nucleic Acids Res , vol.10 , pp. 4321-4337
    • Karpov, V.L.1    Bavykin, S.G.2    Preobrazhenskaya, O.V.3    Belyavsky, A.V.4    Mirzabekov, A.D.5
  • 32
    • 0009625239 scopus 로고
    • Organization of spacer DNA in chromatin
    • doi:10.1073/pnas.76.12.6326
    • Lohr D, van Holde KE (1979) Organization of spacer DNA in chromatin. Proc Natl Acad Sci USA 76: 6326-6330. doi: 10. 1073/pnas. 76. 12. 6326.
    • (1979) Proc Natl Acad Sci USA , vol.76 , pp. 6326-6330
    • Lohr, D.1    van Holde, K.E.2
  • 33
    • 0022998739 scopus 로고
    • The salt dependence of chicken and yeast chromatin structure. Effects on internucleosomal organization and relation to active chromatin
    • Lohr D (1986) The salt dependence of chicken and yeast chromatin structure. Effects on internucleosomal organization and relation to active chromatin. J Biol Chem 261: 9904-9914.
    • (1986) J Biol Chem , vol.261 , pp. 9904-9914
    • Lohr, D.1
  • 34
    • 0021092924 scopus 로고
    • Organization of internucleosomal DNA in rat liver chromatin
    • Strauss F, Prunell A (1983) Organization of internucleosomal DNA in rat liver chromatin. EMBO J 2: 51-56.
    • (1983) EMBO J , vol.2 , pp. 51-56
    • Strauss, F.1    Prunell, A.2
  • 35
    • 0023181481 scopus 로고
    • Sequence-specific positioning of core histones on an 860 base-pair DNA. Experiment and theory
    • doi:10.1016/0022-2836(87)90333-0
    • Drew HR, Calladine CR (1987) Sequence-specific positioning of core histones on an 860 base-pair DNA. Experiment and theory. J Mol Biol 195: 143-173. doi: 10. 1016/0022-2836(87)90333-0.
    • (1987) J Mol Biol , vol.195 , pp. 143-173
    • Drew, H.R.1    Calladine, C.R.2
  • 36
    • 0025000581 scopus 로고
    • The structure of DNA in a nucleosome
    • doi:10.1073/pnas.87.19.7405
    • Hayes JJ, Tullius TD, Wolffe AP (1990) The structure of DNA in a nucleosome. Proc Natl Acad Sci USA 87: 7405-7409. doi: 10. 1073/pnas. 87. 19. 7405.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 7405-7409
    • Hayes, J.J.1    Tullius, T.D.2    Wolffe, A.P.3
  • 37
    • 0025321717 scopus 로고
    • Structure of nucleosomes and organization of internucleosomal DNA in chromatin
    • doi:10.1016/0022-2836(90)90328-J
    • Bavykin SG, Usachenko SI, Zalensky AO, Mirzabekov AD (1990) Structure of nucleosomes and organization of internucleosomal DNA in chromatin. J Mol Biol 212: 495-511. doi: 10. 1016/0022-2836(90)90328-J.
    • (1990) J Mol Biol , vol.212 , pp. 495-511
    • Bavykin, S.G.1    Usachenko, S.I.2    Zalensky, A.O.3    Mirzabekov, A.D.4
  • 38
    • 0026010309 scopus 로고
    • Histone contributions to the structure of DNA in the nucleosome
    • doi:10.1073/pnas.88.15.6829
    • Hayes JJ, Clark DJ, Wolffe AP (1991) Histone contributions to the structure of DNA in the nucleosome. Proc Natl Acad Sci USA 88: 6829-6833. doi: 10. 1073/pnas. 88. 15. 6829.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 6829-6833
    • Hayes, J.J.1    Clark, D.J.2    Wolffe, A.P.3
  • 39
    • 0022330034 scopus 로고
    • Higher-order structure of long repeat chromatin
    • Widom J, Finch JT, Thomas JO (1985) Higher-order structure of long repeat chromatin. EMBO J 4: 3189-3194.
    • (1985) EMBO J , vol.4 , pp. 3189-3194
    • Widom, J.1    Finch, J.T.2    Thomas, J.O.3
  • 40
    • 0028221098 scopus 로고
    • The three-dimensional architecture of chromatin in situ: Electron tomography reveals fibers composed of a continuously variable zig-zag nucleosomal ribbon
    • doi:10.1083/jcb.125.1.1
    • Horowitz RA, Agard DA, Sedat JW, Woodcock CL (1994) The three-dimensional architecture of chromatin in situ: electron tomography reveals fibers composed of a continuously variable zig-zag nucleosomal ribbon. J Cell Biol 125: 1-10. doi: 10. 1083/jcb. 125. 1. 1.
    • (1994) J Cell Biol , vol.125 , pp. 1-10
    • Horowitz, R.A.1    Agard, D.A.2    Sedat, J.W.3    Woodcock, C.L.4
  • 41
    • 0027960444 scopus 로고
    • Three-dimensional structure of extended chromatin fibers as revealed by tapping-mode scanning force microscopy
    • doi:10.1073/pnas.91.24.11621
    • Leuba SH, Yang G, Robert C, Samori B, van Holde K, Zlatanova J, Bustamante C (1994) Three-dimensional structure of extended chromatin fibers as revealed by tapping-mode scanning force microscopy. Proc Natl Acad Sci USA 91: 11621-11625. doi: 10. 1073/pnas. 91. 24. 11621.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 11621-11625
    • Leuba, S.H.1    Yang, G.2    Robert, C.3    Samori, B.4    van Holde, K.5    Zlatanova, J.6    Bustamante, C.7
  • 42
    • 0035313770 scopus 로고    scopus 로고
    • Higher-order structure of chromatin and chromosomes
    • doi:10.1016/S0959-437X(00)00169-6
    • Woodcock CL, Dimitrov S (2001) Higher-order structure of chromatin and chromosomes. Curr Opin Genet Dev 11: 130-135. doi: 10. 1016/S0959-437X(00)00169-6.
    • (2001) Curr Opin Genet Dev , vol.11 , pp. 130-135
    • Woodcock, C.L.1    Dimitrov, S.2
  • 43
    • 0035066656 scopus 로고    scopus 로고
    • DNA folding: Structural and mechanical properties of the two- angle model for chromatin
    • doi:10.1016/S0006-3495(01)76164-4
    • Schiessel H, Gelbart WM, Bruinsma R (2001) DNA folding: structural and mechanical properties of the two- angle model for chromatin. Biophys J 80: 1940-1956. doi: 10. 1016/S0006-3495(01)76164-4.
    • (2001) Biophys J , vol.80 , pp. 1940-1956
    • Schiessel, H.1    Gelbart, W.M.2    Bruinsma, R.3
  • 44
    • 0037381213 scopus 로고    scopus 로고
    • Structure and dynamic behavior of nucleosomes
    • doi:10.1016/S0959-437X(03)00026-1
    • Luger K (2003) Structure and dynamic behavior of nucleosomes. Curr Opin Genet Dev 13: 127-135. doi: 10. 1016/S0959-437X(03)00026-1.
    • (2003) Curr Opin Genet Dev , vol.13 , pp. 127-135
    • Luger, K.1
  • 45
    • 0034958378 scopus 로고    scopus 로고
    • Unfolding individual nucleosomes by stretching single chromatin fibers with optical tweezers
    • doi:10.1038/89646
    • Bennink ML, Leuba SH, Leno GH, Zlatanova J, de Grooth BG, Greve J (2001) Unfolding individual nucleosomes by stretching single chromatin fibers with optical tweezers. Nat Struct Biol 8: 606-610. doi: 10. 1038/89646.
    • (2001) Nat Struct Biol , vol.8 , pp. 606-610
    • Bennink, M.L.1    Leuba, S.H.2    Leno, G.H.3    Zlatanova, J.4    de Grooth, B.G.5    Greve, J.6
  • 46
    • 12344284012 scopus 로고    scopus 로고
    • Specific contributions of histone tails and their acetylation to the mechanical stability of nucleosomes
    • doi:10.1016/j.jmb.2004.11.056
    • Brower-Toland B, Wacker DA, Fulbright RM, Lis JT, Kraus WL, Wang MD (2005) Specific contributions of histone tails and their acetylation to the mechanical stability of nucleosomes. J Mol Biol 346: 135-146. doi: 10. 1016/j. jmb. 2004. 11. 056.
    • (2005) J Mol Biol , vol.346 , pp. 135-146
    • Brower-Toland, B.1    Wacker, D.A.2    Fulbright, R.M.3    Lis, J.T.4    Kraus, W.L.5    Wang, M.D.6
  • 47
    • 17844364466 scopus 로고    scopus 로고
    • Single chromatin fiber stretching reveals physically distinct populations of disassembly events
    • doi:10.1529/biophysj.104.053074
    • Pope LH, Bennink ML, van Leijenhorst-Groener KA, Nikova D, Greve J, Marko JF (2005) Single chromatin fiber stretching reveals physically distinct populations of disassembly events. Biophys J 88: 3572-3583. doi: 10. 1529/biophysj. 104. 053074.
    • (2005) Biophys J , vol.88 , pp. 3572-3583
    • Pope, L.H.1    Bennink, M.L.2    van Leijenhorst-Groener, K.A.3    Nikova, D.4    Greve, J.5    Marko, J.F.6
  • 48
    • 35848958821 scopus 로고    scopus 로고
    • Chromatin remodeling: Insights and intrigue from single-molecule studies
    • doi:10.1038/nsmb1333
    • Cairns BR (2007) Chromatin remodeling: insights and intrigue from single-molecule studies. Nat Struct Mol Biol 14: 989-996. doi: 10. 1038/nsmb1333.
    • (2007) Nat Struct Mol Biol , vol.14 , pp. 989-996
    • Cairns, B.R.1
  • 49
    • 33846804071 scopus 로고    scopus 로고
    • Micromanipulation studies of chromatin fibers in Xenopus egg extracts reveal ATP-dependent chromatin assembly dynamics
    • doi:10.1091/mbc.E06-09-0800
    • Yan J, Maresca TJ, Skoko D, Adams CD, Xiao B, Christensen MO, Heald R, Marko JF (2007) Micromanipulation studies of chromatin fibers in Xenopus egg extracts reveal ATP-dependent chromatin assembly dynamics. Mol Biol Cell 18: 464-474. doi: 10. 1091/mbc. E06-09-0800.
    • (2007) Mol Biol Cell , vol.18 , pp. 464-474
    • Yan, J.1    Maresca, T.J.2    Skoko, D.3    Adams, C.D.4    Xiao, B.5    Christensen, M.O.6    Heald, R.7    Marko, J.F.8
  • 50
    • 34047197779 scopus 로고    scopus 로고
    • Single-chain compaction of long duplex DNA by cationic nanoparticles: Modes of interaction and comparison with chromatin
    • doi:10.1021/jp067926z
    • Zinchenko AA, Sakaue T, Araki S, Yoshikawa K, Baigl D (2007) Single-chain compaction of long duplex DNA by cationic nanoparticles: modes of interaction and comparison with chromatin. J Phys Chem B 111: 3019-3031. doi: 10. 1021/jp067926z.
    • (2007) J Phys Chem B , vol.111 , pp. 3019-3031
    • Zinchenko, A.A.1    Sakaue, T.2    Araki, S.3    Yoshikawa, K.4    Baigl, D.5


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