CUDAlign: Using GPU to accelerate the comparison of megabase genomic sequences

Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP

Volumn , Issue , 2010, Pages 137-146

  Sandes, Edans Flavius O ^a   De Melo, Alba Cristina M A ^a  

^a UNIVERSITY OF BRASILIA   (Brazil)

Author keywords

Biological sequence comparison; GPU; Smith Waterman

Indexed keywords

BIOLOGICAL SEQUENCES; EXACT METHODS; GENOME COMPARISON; GENOMIC SEQUENCE; GPU ALGORITHMS; HUMAN CHROMOSOMES; MEGABASE; PEAK PERFORMANCE; QUADRATIC TIME; SIZE RANGES; SMITH-WATERMAN;

BIOINFORMATICS; GENES; PARALLEL PROGRAMMING;

COMPUTER GRAPHICS EQUIPMENT;

EID: 77749337481     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1693453.1693473     Document Type: Conference Paper

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