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Volumn 9, Issue , 2008, Pages

CBESW: Sequence alignment on the playstation 3

Author keywords

[No Author keywords available]

Indexed keywords

ACCELERATOR TECHNOLOGY; BIOINFORMATICS APPLICATIONS; CELL BROADBAND ENGINE; COMPUTATIONAL PLATFORMS; COMPUTATIONAL POWER; COMPUTATIONAL SCIENCE; SEQUENCE ALIGNMENTS; SMITH-WATERMAN ALGORITHM;

EID: 53749090746     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-9-377     Document Type: Article
Times cited : (39)

References (21)
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    • Smith T Waterman M Identification of common molecular subsequences J Mol Biol 1981, 147(1):195-197. 7265238
    • (1981) J Mol Biol , vol.147 , Issue.1 , pp. 195-197
    • Smith, T.1    Waterman, M.2
  • 4
    • 34347225963 scopus 로고    scopus 로고
    • 160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
    • 1896180 17555593
    • Li ITS Shum W Truong K 160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA) BMC Bioinformatics 2007, 8:185. 1896180 17555593
    • (2007) BMC Bioinformatics , vol.8 , pp. 185
    • Li, I.T.S.1    Shum, W.2    Truong, K.3
  • 5
    • 33846697176 scopus 로고    scopus 로고
    • Striped Smith-Waterman speeds database searches six times over other SIMD implementations
    • 17110365
    • Farrar M Striped Smith-Waterman speeds database searches six times over other SIMD implementations Bioinformatics 2007, 23(2):156-161. 17110365
    • (2007) Bioinformatics , vol.23 , Issue.2 , pp. 156-161
    • Farrar, M.1
  • 7
    • 43349092363 scopus 로고    scopus 로고
    • CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
    • 2323659 18387198
    • Manavski SA Valle G CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment BMC Bioinformatics 2008:9. 2323659 18387198
    • (2008) BMC Bioinformatics , vol.9
    • Manavski, S.A.1    Valle, G.2
  • 8
    • 0033743209 scopus 로고    scopus 로고
    • Six-fold speed-up of Smith-Waterman sequence database searches using parallel processing on common microprocessors
    • 11099256
    • Rognes T Seeberg E Six-fold speed-up of Smith-Waterman sequence database searches using parallel processing on common microprocessors Bioinformatics 2000, 16(8):699-706. 11099256
    • (2000) Bioinformatics , vol.16 , Issue.8 , pp. 699-706
    • Rognes, T.1    Seeberg, E.2
  • 9
    • 0030935244 scopus 로고    scopus 로고
    • Using video-oriented instructions to speed up sequence comparison
    • 9146961
    • Wozniak A Using video-oriented instructions to speed up sequence comparison Comput Appl Biosci 1997, 13(2):145-150. 9146961
    • (1997) Comput Appl Biosci , vol.13 , Issue.2 , pp. 145-150
    • Wozniak, A.1
  • 12
    • 0020484488 scopus 로고
    • An improved algorithm for matching biological sequences
    • 7166760
    • Gotoh O An improved algorithm for matching biological sequences J Mol Biol 1982, 162(3):705-708. 7166760
    • (1982) J Mol Biol , vol.162 , Issue.3 , pp. 705-708
    • Gotoh, O.1
  • 20
    • 0025950944 scopus 로고
    • Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms
    • 1774068
    • Pearson WR Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms Genomics 1991, 11(3):635-650. 1774068
    • (1991) Genomics , vol.11 , Issue.3 , pp. 635-650
    • Pearson, W.R.1
  • 21
    • 0025272240 scopus 로고
    • Rapid and sensitive sequence comparison with FASTP and FASTA
    • 2156132
    • Pearson WR Rapid and sensitive sequence comparison with FASTP and FASTA Methods in Enzymology 1990, 183:63-98. 2156132
    • (1990) Methods in Enzymology , vol.183 , pp. 63-98
    • Pearson, W.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.