-
1
-
-
0038519367
-
"Parallel Biological Sequence Comparison Using Prefix Computations"
-
S. Aluru, N. Futamura, and K. Mehrotra, "Parallel Biological Sequence Comparison Using Prefix Computations," J. Parallel and Distributed Computing, vol. 63, no. 3, pp. 264-272, 2003.
-
(2003)
J. Parallel and Distributed Computing
, vol.63
, Issue.3
, pp. 264-272
-
-
Aluru, S.1
Futamura, N.2
Mehrotra, K.3
-
2
-
-
0036948795
-
"Parallel Dynamic Programming for Solving the String Editing Problem on a CGM/BSP"
-
C.E.R. Alves, E.N. Caceres, and F. Dehne, "Parallel Dynamic Programming for Solving the String Editing Problem on a CGM/BSP," Proc. ACM Symp. Parallel Algorithms and Architectures, pp. 275-281, 2002.
-
(2002)
Proc. ACM Symp. Parallel Algorithms and Architectures
, pp. 275-281
-
-
Alves, C.E.R.1
Caceres, E.N.2
Dehne, F.3
-
3
-
-
0025508207
-
"Efficient Parallel Algorithms for String Editing and Related Problems"
-
A. Apostolico, M.J. Atallah, L.L. Larmore, and S. MacFaddin, " Efficient Parallel Algorithms for String Editing and Related Problems," SIAM J. Computing, vol. 19, no. 5, pp. 968-988, 1990.
-
(1990)
SIAM J. Computing
, vol.19
, Issue.5
, pp. 968-988
-
-
Apostolico, A.1
Atallah, M.J.2
Larmore, L.L.3
MacFaddin, S.4
-
4
-
-
0000228203
-
"A Model of Evolutionary Change in Proteins: Matrices for Detecting Distant Relationships"
-
M.O. Dayhoff, ed., Nat'l Biomedical Research Foundation, DC
-
M.O. Dayhoff, R. Schwartz, and B.C. Orcutt, "A Model of Evolutionary Change in Proteins: Matrices for Detecting Distant Relationships," Atlas of Protein Sequence and Structure, vol. 5, M.O. Dayhoff, ed., Nat'l Biomedical Research Foundation, DC, pp. 345-358, 1978.
-
(1978)
Atlas of Protein Sequence and Structure
, vol.5
, pp. 345-358
-
-
Dayhoff, M.O.1
Schwartz, R.2
Orcutt, B.C.3
-
5
-
-
0023565710
-
"Parallelization of the Dynamic Programming Algorithm for Comparison of Sequences"
-
E.W. Edmiston and R.A. Wagner, "Parallelization of the Dynamic Programming Algorithm for Comparison of Sequences," Proc. Int'l Conf. Parallel Processing, pp. 78-80, 1987.
-
(1987)
Proc. Int'l Conf. Parallel Processing
, pp. 78-80
-
-
Edmiston, E.W.1
Wagner, R.A.2
-
6
-
-
0006323024
-
"Parallel Processing of Biological Sequence Comparison Algorithms"
-
E.W. Edmiston, N.G. Core, J.H. Saltz, and R.M. Smith, "Parallel Processing of Biological Sequence Comparison Algorithms," Int'l J. Parallel Programming, vol. 17, no. 3, pp. 259-275, 1988.
-
(1988)
Int'l J. Parallel Programming
, vol.17
, Issue.3
, pp. 259-275
-
-
Edmiston, E.W.1
Core, N.G.2
Saltz, J.H.3
Smith, R.M.4
-
7
-
-
84859718061
-
"Parallel Syntenic Alignments"
-
N. Futamura, S. Aluru, and X. Huang, "Parallel Syntenic Alignments," Proc. Int'l Conf. High Performance Computing, pp. 420-430, 2002.
-
(2002)
Proc. Int'l Conf. High Performance Computing
, pp. 420-430
-
-
Futamura, N.1
Aluru, S.2
Huang, X.3
-
8
-
-
0020484488
-
"An Improved Algorithm for Matching Biological Sequences"
-
O. Gotoh, "An Improved Algorithm for Matching Biological Sequences," J. Molecular Biology, vol. 162, pp. 705-708, 1982.
-
(1982)
J. Molecular Biology
, vol.162
, pp. 705-708
-
-
Gotoh, O.1
-
9
-
-
0026458378
-
"Amino Acid Substitution Matrices from Protein Blocks"
-
S. Henikoff and J.G. Henikoff, "Amino Acid Substitution Matrices from Protein Blocks," Proc. Nat'l Academy of Sciences, vol. 89, pp. 10915-10919. 1992.
-
(1992)
Proc. Nat'l Academy of Sciences
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
10
-
-
0016518550
-
"A Linear Space Algorithm for Computing Maximal Common Subsequences"
-
D.S. Hirschberg, "A Linear Space Algorithm for Computing Maximal Common Subsequences," Comm. ACM. vol. 18, no. 6, pp. 341-343, 1975.
-
(1975)
Comm. ACM.
, vol.18
, Issue.6
, pp. 341-343
-
-
Hirschberg, D.S.1
-
11
-
-
2342641297
-
-
second ed., Reading, Mass.: Addison-Wesley Publishing
-
A. Grama, V. Kumar, and A. Gupta, Introduction to Parallel Computing second ed., Reading, Mass.: Addison-Wesley Publishing, 2003.
-
(2003)
Introduction to Parallel Computing
-
-
Grama, A.1
Kumar, V.2
Gupta, A.3
-
12
-
-
0024686368
-
"A Space-Efficient Parallel Sequence Comparison Algorithm for a Message-Passing Multiprocessor"
-
X. Huang, "A Space-Efficient Parallel Sequence Comparison Algorithm for a Message-Passing Multiprocessor," Int'l J. Parallel Programming, vol. 18, no. 3, pp. 223-239, 1989.
-
(1989)
Int'l J. Parallel Programming
, vol.18
, Issue.3
, pp. 223-239
-
-
Huang, X.1
-
13
-
-
0025043566
-
"A Space-Efficient Algorithm for Local Similarities"
-
X. Huang, "A Space-Efficient Algorithm for Local Similarities," Computer Applications in the Biosciences, vol. 6, no. 4, pp. 373-381, 1990.
-
(1990)
Computer Applications in the Biosciences
, vol.6
, Issue.4
, pp. 373-381
-
-
Huang, X.1
-
14
-
-
0037314081
-
"A Generalized Global Alignment Algorithm"
-
X. Huang and K. Chao, "A Generalized Global Alignment Algorithm," Bioinformatics, vol. 19, no. 2, pp. 228-233, 2003.
-
(2003)
Bioinformatics
, vol.19
, Issue.2
, pp. 228-233
-
-
Huang, X.1
Chao, K.2
-
15
-
-
0024135983
-
"Protein Sequence Comparison on a Data Parallel Computer"
-
E. Lander, J.P. Mesirov, and W. Taylor, "Protein Sequence Comparison on a Data Parallel Computer," Proc. Int'l Conf. Parallel Processing, pp. 257-263, 1980.
-
(1980)
Proc. Int'l Conf. Parallel Processing
, pp. 257-263
-
-
Lander, E.1
Mesirov, J.P.2
Taylor, W.3
-
16
-
-
0018985316
-
"A Faster Algorithm for Computing String Edit Distances"
-
W.J. Masek and M.S. Paterson, "A Faster Algorithm for Computing String Edit Distances," J. Computer and System Sciences, vol. 20, pp. 18-31, 1980.
-
(1980)
J. Computer and System Sciences
, vol.20
, pp. 18-31
-
-
Masek, W.J.1
Paterson, M.S.2
-
17
-
-
0023984847
-
"Optimal Alignments in Linear Space"
-
E.W. Mayers and W. Miller, "Optimal Alignments in Linear Space," Computer Applications in the Biosciences, vol. 4, no. 1, pp. 11-17, 1988.
-
(1988)
Computer Applications in the Biosciences
, vol.4
, Issue.1
, pp. 11-17
-
-
Mayers, E.W.1
Miller, W.2
-
18
-
-
0014757386
-
"A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins"
-
S.B. Needleman and C.D. Wunsch, "A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins," J. Molecular Biology, vol. 48, pp. 443-453, 1970.
-
(1970)
J. Molecular Biology
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
19
-
-
0003989360
-
-
San Francisco, Calif.: Morgan Kaufmann Publishers
-
P. Pacheco, Parallel Programming with MPI. San Francisco, Calif.: Morgan Kaufmann Publishers, 1996.
-
(1996)
Parallel Programming With MPI
-
-
Pacheco, P.1
-
20
-
-
0025476298
-
"String Editing on an SIMD Hypercube Multicomputer"
-
S. Ranka and S. Sahni, "String Editing on an SIMD Hypercube Multicomputer," J. Parallel and Distributed Computing, vol. 9, pp. 411-418, 1990.
-
(1990)
J. Parallel and Distributed Computing
, vol.9
, pp. 411-418
-
-
Ranka, S.1
Sahni, S.2
-
22
-
-
0019887799
-
"Identification of Common Molecular Subsequences"
-
T.F. Smith and M.S. Waterman, "Identification of Common Molecular Subsequences," J. Molecular Biology, vol. 147, pp. 195-197. 1981.
-
(1981)
J. Molecular Biology
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
|