메뉴 건너뛰기




Volumn 396, Issue 2, 2010, Pages 361-374

Redox-dependent domain rearrangement of protein disulfide isomerase coupled with exposure of its substrate-binding hydrophobic surface

Author keywords

Domain rearrangement; Molecular chaperone; NMR; Protein disulfide isomerase; SAXS

Indexed keywords

CHAPERONE; PROTEIN DISULFIDE ISOMERASE; SOLVENT;

EID: 77449149046     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2009.11.049     Document Type: Article
Times cited : (58)

References (48)
  • 1
    • 0037040541 scopus 로고    scopus 로고
    • Molecular chaperones in the cytosol: from nascent chain to folded protein
    • Hartl F.U., Hayer-Hartl M. Molecular chaperones in the cytosol: from nascent chain to folded protein. Science 2002, 295:1852-1858.
    • (2002) Science , vol.295 , pp. 1852-1858
    • Hartl, F.U.1    Hayer-Hartl, M.2
  • 2
    • 0030027968 scopus 로고    scopus 로고
    • Supervising the fold: functional principles of molecular chaperones
    • Buchner J. Supervising the fold: functional principles of molecular chaperones. FASEB J. 1996, 10:10-19.
    • (1996) FASEB J. , vol.10 , pp. 10-19
    • Buchner, J.1
  • 4
    • 0036198797 scopus 로고    scopus 로고
    • Protein disulfide isomerases exploit synergy between catalytic and specific binding domains
    • Freedman R.B., Klappa P., Ruddock L.W. Protein disulfide isomerases exploit synergy between catalytic and specific binding domains. EMBO Rep. 2002, 3:136-140.
    • (2002) EMBO Rep. , vol.3 , pp. 136-140
    • Freedman, R.B.1    Klappa, P.2    Ruddock, L.W.3
  • 5
    • 0035844206 scopus 로고    scopus 로고
    • Discrimination between native and non-native disulfides by protein-disulfide isomerase
    • Zheng J., Gilbert H.F. Discrimination between native and non-native disulfides by protein-disulfide isomerase. J. Biol. Chem. 2001, 276:15747-15752.
    • (2001) J. Biol. Chem. , vol.276 , pp. 15747-15752
    • Zheng, J.1    Gilbert, H.F.2
  • 6
    • 0037016671 scopus 로고    scopus 로고
    • Catalytic activity and chaperone function of human protein-disulfide isomerase are required for the efficient refolding of proinsulin
    • Winter J., Klappa P., Freedman R.B., Lilie H., Rudolph R. Catalytic activity and chaperone function of human protein-disulfide isomerase are required for the efficient refolding of proinsulin. J. Biol. Chem. 2002, 277:310-317.
    • (2002) J. Biol. Chem. , vol.277 , pp. 310-317
    • Winter, J.1    Klappa, P.2    Freedman, R.B.3    Lilie, H.4    Rudolph, R.5
  • 7
    • 0022387362 scopus 로고
    • Sequence of protein disulphide isomerase and implications of its relationship to thioredoxin
    • Edman J.C., Ellis L., Blacher R.W., Roth R.A., Rutter W.J. Sequence of protein disulphide isomerase and implications of its relationship to thioredoxin. Nature 1985, 317:267-270.
    • (1985) Nature , vol.317 , pp. 267-270
    • Edman, J.C.1    Ellis, L.2    Blacher, R.W.3    Roth, R.A.4    Rutter, W.J.5
  • 10
    • 30344444015 scopus 로고    scopus 로고
    • The crystal structure of yeast protein disulfide isomerase suggests cooperativity between its active sites
    • Tian G., Xiang S., Noiva R., Lennarz W.J., Schindelin H. The crystal structure of yeast protein disulfide isomerase suggests cooperativity between its active sites. Cell 2006, 124:61-73.
    • (2006) Cell , vol.124 , pp. 61-73
    • Tian, G.1    Xiang, S.2    Noiva, R.3    Lennarz, W.J.4    Schindelin, H.5
  • 11
    • 53549090995 scopus 로고    scopus 로고
    • Alternative conformations of the x region of human protein disulphide-isomerase modulate exposure of the substrate binding b′ domain
    • Nguyen V.D., Wallis K., Howard M.J., Haapalainen A.M., Salo K.E., Saaranen M.J., et al. Alternative conformations of the x region of human protein disulphide-isomerase modulate exposure of the substrate binding b′ domain. J. Mol. Biol. 2008, 383:1144-1155.
    • (2008) J. Mol. Biol. , vol.383 , pp. 1144-1155
    • Nguyen, V.D.1    Wallis, K.2    Howard, M.J.3    Haapalainen, A.M.4    Salo, K.E.5    Saaranen, M.J.6
  • 13
    • 0032481380 scopus 로고    scopus 로고
    • The b′ domain provides the principal peptide-binding site of protein disulfide isomerase but all domains contribute to binding of misfolded proteins
    • Klappa P., Ruddock L.W., Darby N.J., Freedman R.B. The b′ domain provides the principal peptide-binding site of protein disulfide isomerase but all domains contribute to binding of misfolded proteins. EMBO J. 1998, 17:927-935.
    • (1998) EMBO J. , vol.17 , pp. 927-935
    • Klappa, P.1    Ruddock, L.W.2    Darby, N.J.3    Freedman, R.B.4
  • 14
    • 0035937408 scopus 로고    scopus 로고
    • Protein disulfide isomerase acts as a redox-dependent chaperone to unfold cholera toxin
    • Tsai B., Rodighiero C., Lencer W.I., Rapoport T.A. Protein disulfide isomerase acts as a redox-dependent chaperone to unfold cholera toxin. Cell 2001, 104:937-948.
    • (2001) Cell , vol.104 , pp. 937-948
    • Tsai, B.1    Rodighiero, C.2    Lencer, W.I.3    Rapoport, T.A.4
  • 15
    • 0037122001 scopus 로고    scopus 로고
    • Is protein disulfide isomerase a redox-dependent molecular chaperone?
    • Lumb R.A., Bulleid N.J. Is protein disulfide isomerase a redox-dependent molecular chaperone?. EMBO J. 2002, 21:6763-6770.
    • (2002) EMBO J. , vol.21 , pp. 6763-6770
    • Lumb, R.A.1    Bulleid, N.J.2
  • 18
    • 0028080915 scopus 로고
    • Mutations in the thioredoxin sites of protein disulfide isomerase reveal functional nonequivalence of the N- and C-terminal domains
    • Lyles M.M., Gilbert H.F. Mutations in the thioredoxin sites of protein disulfide isomerase reveal functional nonequivalence of the N- and C-terminal domains. J. Biol. Chem. 1994, 269:30946-30952.
    • (1994) J. Biol. Chem. , vol.269 , pp. 30946-30952
    • Lyles, M.M.1    Gilbert, H.F.2
  • 19
    • 0033525472 scopus 로고    scopus 로고
    • Functional properties of the two redox-active sites in yeast protein disulphide isomerase in vitro and in vivo
    • Westphal V., Darby N.J., Winther J.R. Functional properties of the two redox-active sites in yeast protein disulphide isomerase in vitro and in vivo. J. Mol. Biol. 1999, 286:1229-1239.
    • (1999) J. Mol. Biol. , vol.286 , pp. 1229-1239
    • Westphal, V.1    Darby, N.J.2    Winther, J.R.3
  • 20
    • 78651030061 scopus 로고
    • Fluorescent indicators of adsorption in aqueous solution and on the solid phase
    • [(325th Meeting) xxxi (abstr.)]
    • Weber G., Laurence D.J. Fluorescent indicators of adsorption in aqueous solution and on the solid phase. Biochem. J. 1954, 56. [(325th Meeting) xxxi (abstr.)].
    • (1954) Biochem. J. , vol.56
    • Weber, G.1    Laurence, D.J.2
  • 21
    • 0029093531 scopus 로고
    • Functional properties of the individual thioredoxin-like domains of protein disulfide isomerase
    • Darby N.J., Creighton T.E. Functional properties of the individual thioredoxin-like domains of protein disulfide isomerase. Biochemistry 1995, 34:11725-11735.
    • (1995) Biochemistry , vol.34 , pp. 11725-11735
    • Darby, N.J.1    Creighton, T.E.2
  • 22
    • 0029881007 scopus 로고    scopus 로고
    • MOLMOL: a program for display and analysis of macromolecular structures
    • Koradi, R., Billeter, M. & Wüthrich, K. (1996). MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graphics, 14, 51-55, 29-32.
    • (1996) J. Mol. Graphics , vol.14 , Issue.51-55 , pp. 29-32
    • Koradi, R.1    Billeter, M.2    Wüthrich, K.3
  • 23
    • 34250368398 scopus 로고    scopus 로고
    • NMR assignments of the b′ and a′ domains of thermophilic fungal protein disulfide isomerase
    • Nakano M., Murakami C., Yamaguchi Y., Sasakawa H., Harada T., Kurimoto E., et al. NMR assignments of the b′ and a′ domains of thermophilic fungal protein disulfide isomerase. J. Biomol. NMR 2006, 36(Suppl. 1):44.
    • (2006) J. Biomol. NMR , vol.36 , Issue.SUPPL. 1 , pp. 44
    • Nakano, M.1    Murakami, C.2    Yamaguchi, Y.3    Sasakawa, H.4    Harada, T.5    Kurimoto, E.6
  • 24
    • 0025861453 scopus 로고
    • Effect of protein and peptide inhibitors on the activity of protein disulfide isomerase
    • Morjana N.A., Gilbert H.F. Effect of protein and peptide inhibitors on the activity of protein disulfide isomerase. Biochemistry 1991, 30:4985-4990.
    • (1991) Biochemistry , vol.30 , pp. 4985-4990
    • Morjana, N.A.1    Gilbert, H.F.2
  • 25
    • 0030875033 scopus 로고    scopus 로고
    • Interactions between protein disulphide isomerase and peptides
    • Klappa P., Hawkins H.C., Freedman R.B. Interactions between protein disulphide isomerase and peptides. Eur. J. Biochem. 1997, 248:37-42.
    • (1997) Eur. J. Biochem. , vol.248 , pp. 37-42
    • Klappa, P.1    Hawkins, H.C.2    Freedman, R.B.3
  • 26
    • 0033001996 scopus 로고    scopus 로고
    • Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing
    • Svergun D.I. Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing. Biophys. J. 1999, 76:2879-2886.
    • (1999) Biophys. J. , vol.76 , pp. 2879-2886
    • Svergun, D.I.1
  • 27
    • 0005548592 scopus 로고
    • X-ray scattering from a troponin C solution and its interpretation with a dumbbell-shaped-molecule model
    • Fujisawa T., Ueki T., Inoko Y. X-ray scattering from a troponin C solution and its interpretation with a dumbbell-shaped-molecule model. J. Appl. Crystallogr. 1987, 20:349-355.
    • (1987) J. Appl. Crystallogr. , vol.20 , pp. 349-355
    • Fujisawa, T.1    Ueki, T.2    Inoko, Y.3
  • 28
    • 3442880147 scopus 로고    scopus 로고
    • Scattering from cylinders with globular end-caps
    • Kaya H. Scattering from cylinders with globular end-caps. J. Appl. Crystallogr. 2004, 37:223-230.
    • (2004) J. Appl. Crystallogr. , vol.37 , pp. 223-230
    • Kaya, H.1
  • 29
    • 12144288546 scopus 로고    scopus 로고
    • Molecular characterization of the principal substrate binding site of the ubiquitous folding catalyst protein disulfide isomerase
    • Pirneskoski A., Klappa P., Lobell M., Williamson R.A., Byrne L., Alanen H.I., et al. Molecular characterization of the principal substrate binding site of the ubiquitous folding catalyst protein disulfide isomerase. J. Biol. Chem. 2004, 279:10374-10381.
    • (2004) J. Biol. Chem. , vol.279 , pp. 10374-10381
    • Pirneskoski, A.1    Klappa, P.2    Lobell, M.3    Williamson, R.A.4    Byrne, L.5    Alanen, H.I.6
  • 30
    • 0032512878 scopus 로고    scopus 로고
    • The multi-domain structure of protein disulfide isomerase is essential for high catalytic efficiency
    • Darby N.J., Penka E., Vincentelli R. The multi-domain structure of protein disulfide isomerase is essential for high catalytic efficiency. J. Mol. Biol. 1998, 276:239-247.
    • (1998) J. Mol. Biol. , vol.276 , pp. 239-247
    • Darby, N.J.1    Penka, E.2    Vincentelli, R.3
  • 31
    • 57749102824 scopus 로고    scopus 로고
    • The catalytic activity of protein-disulfide isomerase requires a conformationally flexible molecule
    • Tian G., Kober F.X., Lewandrowski U., Sickmann A., Lennarz W.J., Schindelin H. The catalytic activity of protein-disulfide isomerase requires a conformationally flexible molecule. J. Biol. Chem. 2008, 283:33630-33640.
    • (2008) J. Biol. Chem. , vol.283 , pp. 33630-33640
    • Tian, G.1    Kober, F.X.2    Lewandrowski, U.3    Sickmann, A.4    Lennarz, W.J.5    Schindelin, H.6
  • 32
    • 15744380512 scopus 로고    scopus 로고
    • A structural disulfide of yeast protein-disulfide isomerase destabilizes the active site disulfide of the N-terminal thioredoxin domain
    • Wilkinson B., Xiao R., Gilbert H.F. A structural disulfide of yeast protein-disulfide isomerase destabilizes the active site disulfide of the N-terminal thioredoxin domain. J. Biol. Chem. 2005, 280:11483-11487.
    • (2005) J. Biol. Chem. , vol.280 , pp. 11483-11487
    • Wilkinson, B.1    Xiao, R.2    Gilbert, H.F.3
  • 33
    • 0029590754 scopus 로고
    • Characterization of the active site cysteine residues of the thioredoxin-like domains of protein disulfide isomerase
    • Darby N.J., Creighton T.E. Characterization of the active site cysteine residues of the thioredoxin-like domains of protein disulfide isomerase. Biochemistry 1995, 34:16770-16780.
    • (1995) Biochemistry , vol.34 , pp. 16770-16780
    • Darby, N.J.1    Creighton, T.E.2
  • 34
    • 33644868738 scopus 로고    scopus 로고
    • Domain architecture of protein-disulfide isomerase facilitates its dual role as an oxidase and an isomerase in Ero1p-mediated disulfide formation
    • Kulp M.S., Frickel E.M., Ellgaard L., Weissman J.S. Domain architecture of protein-disulfide isomerase facilitates its dual role as an oxidase and an isomerase in Ero1p-mediated disulfide formation. J. Biol. Chem. 2006, 281:876-884.
    • (2006) J. Biol. Chem. , vol.281 , pp. 876-884
    • Kulp, M.S.1    Frickel, E.M.2    Ellgaard, L.3    Weissman, J.S.4
  • 35
    • 0030446158 scopus 로고    scopus 로고
    • Electrostatic interactions in the active site of the N-terminal thioredoxin-like domain of protein disulfide isomerase
    • Kortemme T., Darby N.J., Creighton T.E. Electrostatic interactions in the active site of the N-terminal thioredoxin-like domain of protein disulfide isomerase. Biochemistry 1996, 35:14503-14511.
    • (1996) Biochemistry , vol.35 , pp. 14503-14511
    • Kortemme, T.1    Darby, N.J.2    Creighton, T.E.3
  • 36
    • 0021152329 scopus 로고
    • Formation and isomerization of disulfide bonds in proteins: protein disulfide-isomerase
    • Hillson D.A., Lambert N., Freedman R.B. Formation and isomerization of disulfide bonds in proteins: protein disulfide-isomerase. Methods Enzymol. 1984, 107:281-294.
    • (1984) Methods Enzymol. , vol.107 , pp. 281-294
    • Hillson, D.A.1    Lambert, N.2    Freedman, R.B.3
  • 37
    • 0031576336 scopus 로고    scopus 로고
    • Torsion angle dynamics for NMR structure calculation with the new program DYANA
    • Güntert P., Mumenthaler C., Wüthrich K. Torsion angle dynamics for NMR structure calculation with the new program DYANA. J. Mol. Biol. 1997, 273:283-298.
    • (1997) J. Mol. Biol. , vol.273 , pp. 283-298
    • Güntert, P.1    Mumenthaler, C.2    Wüthrich, K.3
  • 38
    • 37049014272 scopus 로고    scopus 로고
    • Version 1.2 of the Crystallography and NMR system
    • Brunger A.T. Version 1.2 of the Crystallography and NMR system. Nat. Protoc. 2007, 2:2728-2733.
    • (2007) Nat. Protoc. , vol.2 , pp. 2728-2733
    • Brunger, A.T.1
  • 39
    • 0028674451 scopus 로고
    • Multidimensional heteronuclear nuclear magnetic resonance of proteins
    • Clore G.M., Gronenborn A.M. Multidimensional heteronuclear nuclear magnetic resonance of proteins. Methods Enzymol. 1994, 239:349-363.
    • (1994) Methods Enzymol. , vol.239 , pp. 349-363
    • Clore, G.M.1    Gronenborn, A.M.2
  • 40
    • 77950020216 scopus 로고    scopus 로고
    • SPARKY 3, University of California, San Francisco, CA.
    • Goddard, T. D. & Kneller, D. G. SPARKY 3, University of California, San Francisco, CA.
    • Goddard, T.D.1    Kneller, D.G.2
  • 41
    • 38349077155 scopus 로고    scopus 로고
    • Optimisation of NMR dynamic models I. Minimisation algorithms and their performance within the model-free and Brownian rotational diffusion spaces
    • d'Auvergne E.J., Gooley P.R. Optimisation of NMR dynamic models I. Minimisation algorithms and their performance within the model-free and Brownian rotational diffusion spaces. J. Biomol. NMR 2008, 40:107-119.
    • (2008) J. Biomol. NMR , vol.40 , pp. 107-119
    • d'Auvergne, E.J.1    Gooley, P.R.2
  • 43
    • 0026257254 scopus 로고
    • 13C NMR study of the hinge region of a mouse monoclonal antibody
    • 13C NMR study of the hinge region of a mouse monoclonal antibody. J. Biomol. NMR 1991, 1:379-390.
    • (1991) J. Biomol. NMR , vol.1 , pp. 379-390
    • Matsunaga, C.1    Kato, K.2    Arata, Y.3
  • 44
    • 0020406958 scopus 로고
    • Assignment of the three methionyl carbonyl carbon resonances in Streptomyces subtilisin inhibitor by a carbon-13 and nitrogen-15 double-labeling technique. A new strategy for structural studies of proteins in solution
    • Kainosho M., Tsuji T. Assignment of the three methionyl carbonyl carbon resonances in Streptomyces subtilisin inhibitor by a carbon-13 and nitrogen-15 double-labeling technique. A new strategy for structural studies of proteins in solution. Biochemistry 1982, 21:6273-6279.
    • (1982) Biochemistry , vol.21 , pp. 6273-6279
    • Kainosho, M.1    Tsuji, T.2
  • 45
    • 0031715982 scopus 로고    scopus 로고
    • Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
    • Shindyalov I.N., Bourne P.E. Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng. 1998, 11:739-747.
    • (1998) Protein Eng. , vol.11 , pp. 739-747
    • Shindyalov, I.N.1    Bourne, P.E.2
  • 46
    • 0025331418 scopus 로고
    • Protein disulfide-isomerase is a substrate for thioredoxin reductase and has thioredoxin-like activity
    • Lundstrom J., Holmgren A. Protein disulfide-isomerase is a substrate for thioredoxin reductase and has thioredoxin-like activity. J. Biol. Chem. 1990, 265:9114-9120.
    • (1990) J. Biol. Chem. , vol.265 , pp. 9114-9120
    • Lundstrom, J.1    Holmgren, A.2
  • 47
    • 9744263917 scopus 로고    scopus 로고
    • Light-induced structural changes of LOV domain-containing polypeptides from Arabidopsis phototropin 1 and 2 studied by small-angle X-ray scattering
    • Nakasako M., Iwata T., Matsuoka D., Tokutomi S. Light-induced structural changes of LOV domain-containing polypeptides from Arabidopsis phototropin 1 and 2 studied by small-angle X-ray scattering. Biochemistry 2004, 43:14881-14890.
    • (2004) Biochemistry , vol.43 , pp. 14881-14890
    • Nakasako, M.1    Iwata, T.2    Matsuoka, D.3    Tokutomi, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.