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Volumn 27, Issue 3, 2010, Pages 694-702

Erratum: Polymorphic competence peptides do not restrict recombination in streptococcus pneumoniae (Molecular Biology and Evolution (2010) 27 (694-702) DOI: 10.1093/molbev/msp287);Polymorphic Competence Peptides Do Not Restrict Recombination in Streptococcus pneumoniae

Author keywords

ComC; Genetic diversity; Population genetic structure; Positive selection; Recombination; Streptococcus pneumoniae

Indexed keywords

BACTERIAL DNA; PEPTIDE;

EID: 77249124846     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msq255     Document Type: Erratum
Times cited : (17)

References (52)
  • 1
    • 0032900678 scopus 로고    scopus 로고
    • Median-joining networks for inferring intraspecific phylogenies
    • Bandelt HJ, Forster P, Rohl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol. 16:37-48.
    • (1999) Mol Biol Evol , vol.16 , pp. 37-48
    • Bandelt, H.J.1    Forster, P.2    Rohl, A.3
  • 2
    • 0032979748 scopus 로고    scopus 로고
    • Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach
    • Beerli P, Felsenstein J. 1999. Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach. Genetics 152:763-773.
    • (1999) Genetics , vol.152 , pp. 763-773
    • Beerli, P.1    Felsenstein, J.2
  • 3
    • 0035836728 scopus 로고    scopus 로고
    • Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach
    • Beerli P, Felsenstein J. 2001. Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proc Natl Acad Sci USA. 98:4563-4568.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 4563-4568
    • Beerli, P.1    Felsenstein, J.2
  • 4
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • Benjamini Y, Yekutieli D. 2001. The control of the false discovery rate in multiple testing under dependency. Ann Stat. 29:1165-1188.
    • (2001) Ann Stat , vol.29 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 7
    • 0032080714 scopus 로고    scopus 로고
    • Genetic estimates of genetic structure and gene flow: Limitations, lessons and new directions
    • Bossart J, Prowell P. 1998. Genetic estimates of genetic structure and gene flow: limitations, lessons and new directions. Trends Ecol Evol. 13:202-206.
    • (1998) Trends Ecol Evol , vol.13 , pp. 202-206
    • Bossart, J.1    Prowell, P.2
  • 8
    • 7144229375 scopus 로고    scopus 로고
    • A competence regulon in Streptococcus pneumoniae revealed by genomic analysis
    • Campbell EA, Choi SY, Masure HR. 1998. A competence regulon in Streptococcus pneumoniae revealed by genomic analysis. Mol Microbiol. 27:929-939.
    • (1998) Mol Microbiol , vol.27 , pp. 929-939
    • Campbell, E.A.1    Choi, S.Y.2    Masure, H.R.3
  • 9
    • 70349656631 scopus 로고    scopus 로고
    • Pherotypes are driving genetic differentiation within Streptococcus pneumo-niae
    • Carriolo M, Pinto F, Melo-Cristino J, Ramirez M. 2009. Pherotypes are driving genetic differentiation within Streptococcus pneumo-niae. BMC Microbiol. 9:191.
    • (2009) BMC Microbiol , vol.9 , pp. 191
    • Carriolo, M.1    Pinto, F.2    Melo-Cristino, J.3    Ramirez, M.4
  • 10
    • 33646484211 scopus 로고    scopus 로고
    • Balancing selection and its effects on sequences in nearby genome regions
    • Charlesworth D. 2006. Balancing selection and its effects on sequences in nearby genome regions. PLoS Genet. 2:e64.
    • (2006) PLoS Genet , vol.2
    • Charlesworth, D.1
  • 12
    • 0742270978 scopus 로고    scopus 로고
    • Specificity determinants and diversification of the Brassica self-incompatibility pollen ligand
    • Chookajorn T, Kachroo A, Ripoll DR, Clark AG, Nasrallah JB. 2004. Specificity determinants and diversification of the Brassica self-incompatibility pollen ligand. Proc Natl Acad Sci USA. 101: 911-917.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 911-917
    • Chookajorn, T.1    Kachroo, A.2    Ripoll, D.R.3    Clark, A.G.4    Nasrallah, J.B.5
  • 13
  • 14
    • 33746320813 scopus 로고    scopus 로고
    • Induction of competence regulons as a general response to stress in gram-positive bacteria
    • Claverys JP, Prudhomme M, Martin B. 2006. Induction of competence regulons as a general response to stress in gram-positive bacteria. Annu Rev Microbiol. 60:451-475.
    • (2006) Annu Rev Microbiol , vol.60 , pp. 451-475
    • Claverys, J.P.1    Prudhomme, M.2    Martin, B.3
  • 15
    • 0035527404 scopus 로고    scopus 로고
    • Bacterial species and speciation
    • Cohan FM. 2001. Bacterial species and speciation. Syst Biol. 50: 513-524.
    • (2001) Syst Biol , vol.50 , pp. 513-524
    • Cohan, F.M.1
  • 16
    • 0036874116 scopus 로고    scopus 로고
    • Sexual isolation and speciation in bacteria
    • Cohan FM. 2002. Sexual isolation and speciation in bacteria. Genetica. 116:359-370.
    • (2002) Genetica , vol.116 , pp. 359-370
    • Cohan, F.M.1
  • 17
    • 0032729840 scopus 로고    scopus 로고
    • Extensive variation in the ddl gene of penicillin-resistant Streptococcus pneumoniae results from a hitchhiking effect driven by the penicillin-binding protein 2b gene
    • Enright MC, Spratt BG. 1999. Extensive variation in the ddl gene of penicillin-resistant Streptococcus pneumoniae results from a hitchhiking effect driven by the penicillin-binding protein 2b gene. Mol Biol Evol. 16:1687-1695.
    • (1999) Mol Biol Evol , vol.16 , pp. 1687-1695
    • Enright, M.C.1    Spratt, B.G.2
  • 18
    • 0035909914 scopus 로고    scopus 로고
    • Recombination and mutation during long-term gastric colonization by Helicobacter pylori: Estimates of clock rates, recombination size, and minimal age
    • Falush D, Kraft C, Taylor NS, Correa P, Fox JG, Achtman M, Suerbaum S. 2001. Recombination and mutation during long-term gastric colonization by Helicobacter pylori: estimates of clock rates, recombination size, and minimal age. Proc Natl Acad Sci USA. 98:15056-15061.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 15056-15061
    • Falush, D.1    Kraft, C.2    Taylor, N.S.3    Correa, P.4    Fox, J.G.5    Achtman, M.6    Suerbaum, S.7
  • 19
    • 0033865030 scopus 로고    scopus 로고
    • Estimating the relative contributions of mutation and recombination to clonal diversification: A comparison between Neisseria meningitidis and Streptococcus pneumoniae
    • Feil EJ, Enright MC, Spratt BG. 2000. Estimating the relative contributions of mutation and recombination to clonal diversification: a comparison between Neisseria meningitidis and Streptococcus pneumoniae. Res Microbiol. 151:465-469.
    • (2000) Res Microbiol , vol.151 , pp. 465-469
    • Feil, E.J.1    Enright, M.C.2    Spratt, B.G.3
  • 20
    • 0032733829 scopus 로고    scopus 로고
    • The relative contributions of recombination and mutation to the divergence of clones of Neisseria meningitidis
    • Feil EJ, Maiden MC, Achtman M, Spratt BG. 1999. The relative contributions of recombination and mutation to the divergence of clones of Neisseria meningitidis. Mol Biol Evol. 16:1496-1502.
    • (1999) Mol Biol Evol , vol.16 , pp. 1496-1502
    • Feil, E.J.1    Maiden, M.C.2    Achtman, M.3    Spratt, B.G.4
  • 21
    • 33846625056 scopus 로고    scopus 로고
    • Recombination and the nature of bacterial speciation
    • Fraser C, Hanage WP, Spratt BG. 2007. Recombination and the nature of bacterial speciation. Science. 315:476-480.
    • (2007) Science , vol.315 , pp. 476-480
    • Fraser, C.1    Hanage, W.P.2    Spratt, B.G.3
  • 22
    • 53349102072 scopus 로고    scopus 로고
    • Genetic structuring and migration patterns of Atlantic bigeye tuna, Thunnus obesus (Lowe, 1839)
    • Gonzalez EG, Beerli P, Zardoya R. 2008. Genetic structuring and migration patterns of Atlantic bigeye tuna, Thunnus obesus (Lowe, 1839). BMC Evol Biol. 8:252.
    • (2008) BMC Evol Biol , vol.8 , pp. 252
    • Gonzalez, E.G.1    Beerli, P.2    Zardoya, R.3
  • 23
    • 0020356832 scopus 로고
    • Sequence-specific DNA uptake in transformation of Neisseria gonorrhoeae
    • Graves JF, Biswas GD, Sparling PF. 1982. Sequence-specific DNA uptake in transformation of Neisseria gonorrhoeae. J Bacteriol. 152:1071-1077.
    • (1982) J Bacteriol , vol.152 , pp. 1071-1077
    • Graves, J.F.1    Biswas, G.D.2    Sparling, P.F.3
  • 24
    • 32244441319 scopus 로고    scopus 로고
    • Inhibition of competence development in Streptococcus pneu-moniae by increased basal-level expression of the ComDE two-component regulatory system
    • Guiral S, Henard V, Granadel C, Martin B, Claverys JP. 2006. Inhibition of competence development in Streptococcus pneu-moniae by increased basal-level expression of the ComDE two-component regulatory system. Microbiology 152:323-331.
    • (2006) Microbiology , vol.152 , pp. 323-331
    • Guiral, S.1    Henard, V.2    Granadel, C.3    Martin, B.4    Claverys, J.P.5
  • 25
    • 0028845364 scopus 로고
    • An unmodified heptadecapeptide pheromone induces competence for genetic transformation in Streptococcus pneumoniae
    • Havarstein LS, Coomaraswamy G, Morrison DA. 1995. An unmodified heptadecapeptide pheromone induces competence for genetic transformation in Streptococcus pneumoniae. Proc Natl Acad Sci USA. 92:11140-11144.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 11140-11144
    • Havarstein, L.S.1    Coomaraswamy, G.2    Morrison, D.A.3
  • 26
    • 0029781001 scopus 로고    scopus 로고
    • Identification of the streptococcal competence-pheromone receptor
    • Havarstein LS, Gaustad P, Nes IF, Morrison DA. 1996. Identification of the streptococcal competence-pheromone receptor. Mol Microbiol. 21:863-869.
    • (1996) Mol Microbiol , vol.21 , pp. 863-869
    • Havarstein, L.S.1    Gaustad, P.2    Nes, I.F.3    Morrison, D.A.4
  • 27
    • 0030668266 scopus 로고    scopus 로고
    • Natural competence in the genus Streptococcus: Evidence that streptococci can change pherotype by interspecies recombinational exchanges
    • Havarstein LS, Hakenbeck R, Gaustad P. 1997. Natural competence in the genus Streptococcus: evidence that streptococci can change pherotype by interspecies recombinational exchanges. J Bacteriol. 179:6589-6594.
    • (1997) J Bacteriol , vol.179 , pp. 6589-6594
    • Havarstein, L.S.1    Hakenbeck, R.2    Gaustad, P.3
  • 28
    • 0001935493 scopus 로고
    • Gene genealogies and the coalescent process
    • Hudson RR. 1991. Gene genealogies and the coalescent process. Oxford Surv Evol Biol. 7:1-44.
    • (1991) Oxford Surv Evol Biol , vol.7 , pp. 1-44
    • Hudson, R.R.1
  • 29
    • 0023339852 scopus 로고
    • A test of neutral molecular evolution based on nucleotide data
    • Hudson RR, Kreitman M, Aguade M. 1987. A test of neutral molecular evolution based on nucleotide data. Genetics 116:153-159.
    • (1987) Genetics , vol.116 , pp. 153-159
    • Hudson, R.R.1    Kreitman, M.2    Aguade, M.3
  • 30
    • 27444438995 scopus 로고    scopus 로고
    • Sensor domain of histidine kinase ComD confers competence pherotype specificity in Streptoccoccus pneumoniae
    • Iannelli F, Oggioni MR, Pozzi G. 2005. Sensor domain of histidine kinase ComD confers competence pherotype specificity in Streptoccoccus pneumoniae. FEMS Microbiol Lett. 252:321-326.
    • (2005) FEMS Microbiol Lett , vol.252 , pp. 321-326
    • Iannelli, F.1    Oggioni, M.R.2    Pozzi, G.3
  • 31
    • 33749004815 scopus 로고    scopus 로고
    • Positive selection in the ComC-ComD system of Streptococcal species
    • Ichihara H, Kuma K, Toh H. 2006. Positive selection in the ComC-ComD system of Streptococcal species. J Bacteriol. 188: 6429-6434.
    • (2006) J Bacteriol , vol.188 , pp. 6429-6434
    • Ichihara, H.1    Kuma, K.2    Toh, H.3
  • 32
    • 33746428696 scopus 로고    scopus 로고
    • Modified Hudson-Kreitman-Aguade test and two-dimensional evaluation of neutrality tests
    • Innan H. 2006. Modified Hudson-Kreitman-Aguade test and two-dimensional evaluation of neutrality tests. Genetics 173:1725-1733.
    • (2006) Genetics , vol.173 , pp. 1725-1733
    • Innan, H.1
  • 33
    • 45149120630 scopus 로고    scopus 로고
    • A predatory mechanism dramatically increases the efficiency of lateral gene transfer in Streptococcus pneumoniae and related commensal species
    • Johnsborg O, Eldholm V, Bjørnstad ML, Havarstein LS. 2008. A predatory mechanism dramatically increases the efficiency of lateral gene transfer in Streptococcus pneumoniae and related commensal species. Mol Microbiol. 69(1):245-253.
    • (2008) Mol Microbiol , vol.69 , Issue.1 , pp. 245-253
    • Johnsborg, O.1    Eldholm, V.2    Bjørnstad, M.L.3    Havarstein, L.S.4
  • 34
    • 35549011073 scopus 로고    scopus 로고
    • High diversity due to balancing selection in the promoter region of the Medea gene in Arabidopsis lyrata
    • Kawabe A, Fujimoto R, Charlesworth D. 2007. High diversity due to balancing selection in the promoter region of the Medea gene in Arabidopsis lyrata. Curr Biol. 17:1885-1889.
    • (2007) Curr Biol , vol.17 , pp. 1885-1889
    • Kawabe, A.1    Fujimoto, R.2    Charlesworth, D.3
  • 36
    • 22144435935 scopus 로고    scopus 로고
    • Co-ordinated bacteriocin production and competence development: A possible mechanism for taking up DNA from neighbouring species
    • KrethJ,MerrittJ,Shi W,Qi F. 2005. Co-ordinated bacteriocin production and competence development: a possible mechanism for taking up DNA from neighbouring species. Mol Microbiol. 57:392-404.
    • (2005) Mol Microbiol , vol.57 , pp. 392-404
    • Kreth, J.1    Merritt, J.2    Shi, W.3    Qi, F.4
  • 37
    • 0033959357 scopus 로고    scopus 로고
    • Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation
    • Majewski J, Zawadzki P, Pickerill P, Cohan FM, Dowson CG. 2000. Barriers to genetic exchange between bacterial species: streptococcus pneumoniae transformation. J Bacteriol. 182:1016-1023.
    • (2000) J Bacteriol , vol.182 , pp. 1016-1023
    • Majewski, J.1    Zawadzki, P.2    Pickerill, P.3    Cohan, F.M.4    Dowson, C.G.5
  • 39
    • 0027738276 scopus 로고
    • The coalescent in two colonies with symmetric migration
    • Nath HB, Griffiths RC. 1993. The coalescent in two colonies with symmetric migration. J Math Biol. 31:841-851.
    • (1993) J Math Biol , vol.31 , pp. 841-851
    • Nath, H.B.1    Griffiths, R.C.2
  • 40
    • 0029745349 scopus 로고    scopus 로고
    • Regulation of competence for genetic transformation in Streptococcus pneu-moniae by an auto-induced peptide pheromone and a two-component regulatory system
    • Pestova EV, Havarstein LS, Morrison DA. 1996. Regulation of competence for genetic transformation in Streptococcus pneu-moniae by an auto-induced peptide pheromone and a two-component regulatory system. Mol Microbiol. 21:853-862.
    • (1996) Mol Microbiol , vol.21 , pp. 853-862
    • Pestova, E.V.1    Havarstein, L.S.2    Morrison, D.A.3
  • 41
    • 0029795692 scopus 로고    scopus 로고
    • Competence for genetic transformation in encapsulated strains of Streptococcus pneumoniae: Two allelic variants of the peptide pheromone
    • Pozzi G, Masala L, Iannelli F, Manganelli R, Havarstein LS, Piccoli L, Simon D, Morrison DA. 1996. Competence for genetic transformation in encapsulated strains of Streptococcus pneumoniae: two allelic variants of the peptide pheromone. J Bacteriol. 178: 6087-6090.
    • (1996) J Bacteriol , vol.178 , pp. 6087-6090
    • Pozzi, G.1    Masala, L.2    Iannelli, F.3    Manganelli, R.4    Havarstein, L.S.5    Piccoli, L.6    Simon, D.7    Morrison, D.A.8
  • 42
  • 43
    • 0019276739 scopus 로고
    • Genetic diversity and structure in Escherichia coli populations
    • Selander RK, Levin BR. 1980. Genetic diversity and structure in Escherichia coli populations. Science 210:545-547.
    • (1980) Science , vol.210 , pp. 545-547
    • Selander, R.K.1    Levin, B.R.2
  • 44
    • 0018414465 scopus 로고
    • Sequence-specific DNA uptake in Haemophilus transformation
    • Sisco KL, Smith HO. 1979. Sequence-specific DNA uptake in Haemophilus transformation. Proc Natl Acad Sci USA. 76:972-976.
    • (1979) Proc Natl Acad Sci USA , vol.76 , pp. 972-976
    • Sisco, K.L.1    Smith, H.O.2
  • 45
    • 3242881003 scopus 로고    scopus 로고
    • Exploring the concept of clonality in bacteria
    • Spratt BG. 2004. Exploring the concept of clonality in bacteria. Methods Mol Biol. 266:323-352.
    • (2004) Methods Mol Biol , vol.266 , pp. 323-352
    • Spratt, B.G.1
  • 46
    • 0033614336 scopus 로고    scopus 로고
    • Bacterial population genetics, evolution and epidemiology
    • Spratt BG, Maiden MC. 1999. Bacterial population genetics, evolution and epidemiology. Philos Trans R Soc Lond B Biol Sci. 354:701-710.
    • (1999) Philos Trans R Soc Lond B Biol Sci , vol.354 , pp. 701-710
    • Spratt, B.G.1    Maiden, M.C.2
  • 47
    • 0037188501 scopus 로고    scopus 로고
    • Induction of natural competence in Streptococcus pneumoniae triggers lysis and DNA release from a subfraction of the cell population
    • Steinmoen H, Knutsen E, Havarstein LS. 2002. Induction of natural competence in Streptococcus pneumoniae triggers lysis and DNA release from a subfraction of the cell population. Proc Natl Acad Sci USA. 99:7681-7686.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 7681-7686
    • Steinmoen, H.1    Knutsen, E.2    Havarstein, L.S.3
  • 48
    • 0013844804 scopus 로고
    • Control of the competent state in Pneumococcus by a hormone-like cell product: An example for a new type of regulatory mechanism in bacteria
    • Tomasz A. 1965. Control of the competent state in Pneumococcus by a hormone-like cell product: an example for a new type of regulatory mechanism in bacteria. Nature 208:155-159.
    • (1965) Nature , vol.208 , pp. 155-159
    • Tomasz, A.1
  • 49
    • 0032716393 scopus 로고    scopus 로고
    • Competence for transformation: A matter of taste
    • Tortosa P, Dubnau D. 1999. Competence for transformation: a matter of taste. Curr Opin Microbiol. 2:588-592.
    • (1999) Curr Opin Microbiol , vol.2 , pp. 588-592
    • Tortosa, P.1    Dubnau, D.2
  • 50
    • 0032909885 scopus 로고    scopus 로고
    • Genetic diversity of the streptococcal competence (com) gene locus
    • Whatmore AM, Barcus VA, Dowson CG. 1999. Genetic diversity of the streptococcal competence (com) gene locus. J Bacteriol. 181:3144-3154.
    • (1999) J Bacteriol , vol.181 , pp. 3144-3154
    • Whatmore, A.M.1    Barcus, V.A.2    Dowson, C.G.3
  • 51
    • 0043269792 scopus 로고    scopus 로고
    • An international prospective study of pneumococcal bacteremia: Correlation with in vitro resistance, antibiotics administered, and clinical outcome
    • Yu VL, Chiou CC, Feldman C, et al. (14 co-authors). 2003. An international prospective study of pneumococcal bacteremia: correlation with in vitro resistance, antibiotics administered, and clinical outcome. Clin Infect Dis. 37:230-237.
    • (2003) Clin Infect Dis , vol.37 , pp. 230-237
    • Yu, V.L.1    Chiou, C.C.2    Feldman, C.3
  • 52
    • 0029038657 scopus 로고
    • The log-linear relationship between sexual isolation and sequence divergence in Bacillus transformation is robust
    • Zawadzki P, Roberts MS, Cohan FM. 1995. The log-linear relationship between sexual isolation and sequence divergence in Bacillus transformation is robust. Genetics 140:917-932.
    • (1995) Genetics , vol.140 , pp. 917-932
    • Zawadzki, P.1    Roberts, M.S.2    Cohan, F.M.3


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