-
1
-
-
0031855362
-
Development of competence in Streptococcus pneumoniae: Pheromone autoinduction and control of quorum sensing by the oligopeptide permease
-
Alloing, G., B. Martin, C. Granadel, and J.-P. Claverys. 1998. Development of competence in Streptococcus pneumoniae: pheromone autoinduction and control of quorum sensing by the oligopeptide permease. Mol. Microbiol. 29:75-83.
-
(1998)
Mol. Microbiol.
, vol.29
, pp. 75-83
-
-
Alloing, G.1
Martin, B.2
Granadel, C.3
Claverys, J.-P.4
-
2
-
-
0042208362
-
Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites
-
Anisimova, M., R. Nielsen, and Z. Yang. 2003. Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites. Genetics 164:1229-1236.
-
(2003)
Genetics
, vol.164
, pp. 1229-1236
-
-
Anisimova, M.1
Nielsen, R.2
Yang, Z.3
-
3
-
-
0346991737
-
Diversifying selection at the Bacillus quorum-sensing locus and determinants of modification specificity during synthesis of the ComX pheromone
-
Ansaldi, M., and D. Dubnau. 2004. Diversifying selection at the Bacillus quorum-sensing locus and determinants of modification specificity during synthesis of the ComX pheromone. J. Bacteriol. 186:15-21.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 15-21
-
-
Ansaldi, M.1
Dubnau, D.2
-
4
-
-
16444378767
-
Evidence of positive Darwinian selection in Omp85, a highly conserved bacterial outer membrane protein essential for cell viability
-
Fitzpatrick, D. A., and J. O. McInerney. 2005. Evidence of positive Darwinian selection in Omp85, a highly conserved bacterial outer membrane protein essential for cell viability. J. Mol. Evol. 60:268-273.
-
(2005)
J. Mol. Evol.
, vol.60
, pp. 268-273
-
-
Fitzpatrick, D.A.1
McInerney, J.O.2
-
5
-
-
20844444771
-
Competence-programmed predation of noncompetent cells in the human pathogen Streptococcus pneumoniae: Genetic requirements
-
Guiral, S., T. J. Mitchell, B. Martin, and J.-P. Claverys. 2005. Competence-programmed predation of noncompetent cells in the human pathogen Streptococcus pneumoniae: genetic requirements. Proc. Natl. Acad. Sci. USA 102:8710-8715.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 8710-8715
-
-
Guiral, S.1
Mitchell, T.J.2
Martin, B.3
Claverys, J.-P.4
-
6
-
-
0028845364
-
An unmodified heptadecapeptide pheromone induces competence for genetic transformation in Streptococcus pneumoniae
-
Håvarstein, L. S., G. Coomaraswamy, and D. A. Morrison. 1995. An unmodified heptadecapeptide pheromone induces competence for genetic transformation in Streptococcus pneumoniae. Proc. Natl. Acad. Sci. USA 92:11140-11144.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 11140-11144
-
-
Håvarstein, L.S.1
Coomaraswamy, G.2
Morrison, D.A.3
-
7
-
-
0029781001
-
Identification of the streptococcal competence-pheromone receptor
-
Håvarstein, L. S., P. Gaustad, I. F. Nes, and D. A. Morrison. 1996. Identification of the streptococcal competence-pheromone receptor. Mol. Microbiol. 21:863-869.
-
(1996)
Mol. Microbiol.
, vol.21
, pp. 863-869
-
-
Håvarstein, L.S.1
Gaustad, P.2
Nes, I.F.3
Morrison, D.A.4
-
8
-
-
0030668266
-
Natural competence in the genus Streptococcus: Evidence that streptococci can change pherotype by interspecies recombinational exchanges
-
Håvarstein, L. S., R. Hakenbeck, and P. Gaustad. 1997. Natural competence in the genus Streptococcus: evidence that streptococci can change pherotype by interspecies recombinational exchanges. J. Bacteriol. 179:6589-6594.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 6589-6594
-
-
Håvarstein, L.S.1
Hakenbeck, R.2
Gaustad, P.3
-
9
-
-
33645081479
-
New insights into the pneumococcal fratricide: Relationship to clumping and identification of a novel immunity factor
-
Håvarstein, L. S., B. Martin, O. Johnsborg, C. Granadel, and J. P. Claverys. 2006. New insights into the pneumococcal fratricide: relationship to clumping and identification of a novel immunity factor. Mol. Microbiol. 59:1297-1307.
-
(2006)
Mol. Microbiol.
, vol.59
, pp. 1297-1307
-
-
Håvarstein, L.S.1
Martin, B.2
Johnsborg, O.3
Granadel, C.4
Claverys, J.P.5
-
10
-
-
33644747756
-
A hydrophobic patch in the competence-stimulating peptide, a pneumococcal competence pheromone, is essential for specificity and biological activity
-
Johnsborg, O., P. E. Kristiansen, T. Blomqvist, and L. S. Håvarstein. 2006. A hydrophobic patch in the competence-stimulating peptide, a pneumococcal competence pheromone, is essential for specificity and biological activity. J. Bacteriol. 188:1744-1749.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 1744-1749
-
-
Johnsborg, O.1
Kristiansen, P.E.2
Blomqvist, T.3
Håvarstein, L.S.4
-
11
-
-
0000732090
-
Evolution of protein molecules
-
H. N. Munro (ed.), Academic Press, Inc., New York, N.Y.
-
Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules, p. 21-132. In H. N. Munro (ed.), Mammalian protein metabolism III. Academic Press, Inc., New York, N.Y.
-
(1969)
Mammalian Protein Metabolism III
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
12
-
-
0034819230
-
Genetic algorithm-based maximum-likelihood analysis for molecular phylogeny
-
Katoh, K., K. Kuma, and T. Miyata. 2001. Genetic algorithm-based maximum-likelihood analysis for molecular phylogeny. J. Mol. Evol. 53:477-484.
-
(2001)
J. Mol. Evol.
, vol.53
, pp. 477-484
-
-
Katoh, K.1
Kuma, K.2
Miyata, T.3
-
13
-
-
21144431739
-
Choline-binding protein D (CbpD) in Streptococcus pneumoniae is essential for competence-induced cell lysis
-
Kausmally, L., O. Johnsborg, M. Lunde, E. Knutsen, and L. S. Håvarstein. 2005. Choline-binding protein D (CbpD) in Streptococcus pneumoniae is essential for competence-induced cell lysis. J. Bacteriol. 187:4338-4345.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 4338-4345
-
-
Kausmally, L.1
Johnsborg, O.2
Lunde, M.3
Knutsen, E.4
Håvarstein, L.S.5
-
14
-
-
0032816642
-
Identification of a new regulator in Streptococcus pneumoniae linking quorum sensing to competence for genetic transformation
-
Lee, M. S., and D. A. Morrison. 1999. Identification of a new regulator in Streptococcus pneumoniae linking quorum sensing to competence for genetic transformation. J. Bacteriol. 181:5004-5016.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 5004-5016
-
-
Lee, M.S.1
Morrison, D.A.2
-
15
-
-
0035135976
-
Natural genetic transformation of Streptococcus mutans growing in biofilms
-
Li, Y. H., P. C. Lau, J. H. Lee, R. P. Ellen, and D. G. Cvitkovitch. 2001. Natural genetic transformation of Streptococcus mutans growing in biofilms. J. Bacteriol. 183:897-908.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 897-908
-
-
Li, Y.H.1
Lau, P.C.2
Lee, J.H.3
Ellen, R.P.4
Cvitkovitch, D.G.5
-
16
-
-
14544293686
-
Positive selection in the carbohydrate recognition domains of sea urchin sperm receptor for egg jelly (suREJ) proteins
-
Mah, S. A., W. J. Swanson, and V. D. Vacquier. 2005. Positive selection in the carbohydrate recognition domains of sea urchin sperm receptor for egg jelly (suREJ) proteins. Mol. Biol. Evol. 22:533-541.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 533-541
-
-
Mah, S.A.1
Swanson, W.J.2
Vacquier, V.D.3
-
17
-
-
0006226387
-
Extraordinarily high evolutionary rate of pseudogenes: Evidence for the presence of selective pressure against changes between synonymous codons
-
Miyata, T., and H. Hayashida. 1981. Extraordinarily high evolutionary rate of pseudogenes: evidence for the presence of selective pressure against changes between synonymous codons. Proc. Natl. Acad. Sci. USA 78:5739-5743.
-
(1981)
Proc. Natl. Acad. Sci. USA
, vol.78
, pp. 5739-5743
-
-
Miyata, T.1
Hayashida, H.2
-
18
-
-
0019134329
-
Molecular evolution of mRNA: A method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application
-
Miyata, T., and T. Yasunaga. 1980. Molecular evolution of mRNA: a method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application. J. Mol. Evol. 16:23-36.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 23-36
-
-
Miyata, T.1
Yasunaga, T.2
-
19
-
-
0019151964
-
Nucleotide sequence divergence of mouse immunoglobulin gamma 1 and gamma 2b chain genes and the hypothesis of intervening sequence-mediated domain transfer
-
Miyata, T., T. Yasunaga, Y. Yamawaki-Kataoka, M. Obata, and T. Honjo. 1980. Nucleotide sequence divergence of mouse immunoglobulin gamma 1 and gamma 2b chain genes and the hypothesis of intervening sequence-mediated domain transfer. Proc. Natl. Acad. Scei. USA 77:2143-2147.
-
(1980)
Proc. Natl. Acad. Scei. USA
, vol.77
, pp. 2143-2147
-
-
Miyata, T.1
Yasunaga, T.2
Yamawaki-Kataoka, Y.3
Obata, M.4
Honjo, T.5
-
20
-
-
7644243116
-
Release of DNA into the medium by competent Streptococcus pneumoniae: Kinetics, mechanism and stability of the liberated DNA
-
Moscoso, M., and J.-P. Claverys. 2004. Release of DNA into the medium by competent Streptococcus pneumoniae: kinetics, mechanism and stability of the liberated DNA. Mol. Microbiol. 54:783-794.
-
(2004)
Mol. Microbiol.
, vol.54
, pp. 783-794
-
-
Moscoso, M.1
Claverys, J.-P.2
-
21
-
-
0029745349
-
Regulation of competence for genetic transformation in Streptococcus pneumoniae by an auto-induced peptide pheromone and a two-component regulatory system
-
Pestova, E. V., L. S. Håvarstein, and D. A. Morrison. 1996. Regulation of competence for genetic transformation in Streptococcus pneumoniae by an auto-induced peptide pheromone and a two-component regulatory system. Mol. Microbiol. 21:853-862.
-
(1996)
Mol. Microbiol.
, vol.21
, pp. 853-862
-
-
Pestova, E.V.1
Håvarstein, L.S.2
Morrison, D.A.3
-
22
-
-
0029795692
-
Competence for genetic transformation in encapsulated strains of Streptococcus pneumoniae: Two allelic variants of the peptide pheromone
-
Pozzi, G., L. Masala, F. Iannelli, R. Manganelli, L. S. Håvarstein, L. Piccoli, D. Simon, and D. A. Morrison. 1996. Competence for genetic transformation in encapsulated strains of Streptococcus pneumoniae: two allelic variants of the peptide pheromone. J. Bacteriol. 178:6087-6090.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 6087-6090
-
-
Pozzi, G.1
Masala, L.2
Iannelli, F.3
Manganelli, R.4
Håvarstein, L.S.5
Piccoli, L.6
Simon, D.7
Morrison, D.A.8
-
23
-
-
13444257876
-
The Adaptive Evolution Database (TAED): A phylogeny based tool for comparative genomics
-
Roth, C., M. J. Betts, P. Steffansson, G. Saelensminde, and D. A. Liberles. 2005. The Adaptive Evolution Database (TAED): a phylogeny based tool for comparative genomics. Nucleic Acids Res. 33:D495-D497.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Roth, C.1
Betts, M.J.2
Steffansson, P.3
Saelensminde, G.4
Liberles, D.A.5
-
24
-
-
0031012364
-
In search of molecular Darwinism
-
Sharp, P. M. 1997. In search of molecular Darwinism. Nature 385:111-112.
-
(1997)
Nature
, vol.385
, pp. 111-112
-
-
Sharp, P.M.1
-
25
-
-
0037188501
-
Induction of natural competence in Streptococcus pneumoniae triggers lysis and DNA release from a subfraction of the cell population
-
Steinmoen, H., E. Knutsen, and L. S. Håvarstein. 2002. Induction of natural competence in Streptococcus pneumoniae triggers lysis and DNA release from a subfraction of the cell population. Proc. Natl. Acad. Sci. USA 99:7681-7686.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 7681-7686
-
-
Steinmoen, H.1
Knutsen, E.2
Håvarstein, L.S.3
-
26
-
-
0344666699
-
Competence-induced cells of Streptococcus pneumoniae lyse competence-deficient cells of the same strain during cocultivation
-
Steinmoen, H., A. Teigen, and L. S. Håvarstein. 2003. Competence-induced cells of Streptococcus pneumoniae lyse competence-deficient cells of the same strain during cocultivation. J. Bacteriol. 185:7176-7183.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 7176-7183
-
-
Steinmoen, H.1
Teigen, A.2
Håvarstein, L.S.3
-
27
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
28
-
-
27944442272
-
Quorum sensing: Cell-to-cell communication in bacteria
-
Waters, C. M., and B. L. Bassler. 2005. Quorum sensing: cell-to-cell communication in bacteria. Annu. Rev. Cell Dev. Biol. 21:319-346.
-
(2005)
Annu. Rev. Cell Dev. Biol.
, vol.21
, pp. 319-346
-
-
Waters, C.M.1
Bassler, B.L.2
-
29
-
-
0032790625
-
Identification of DNA binding sites for ComE, a key regulator of natural competence in Streptococcus pneumoniae
-
Ween, O., P. Gaustad, and L. S. Håvarstein. 1999. Identification of DNA binding sites for ComE, a key regulator of natural competence in Streptococcus pneumoniae. Mol. Microbiol. 33:817-827.
-
(1999)
Mol. Microbiol.
, vol.33
, pp. 817-827
-
-
Ween, O.1
Gaustad, P.2
Håvarstein, L.S.3
-
30
-
-
0032909885
-
Genetic diversity of the streptococcal competence (com) gene locus
-
Whatmore, A. M., V. A. Barcus, and C. G. Dowson. 1999. Genetic diversity of the streptococcal competence (com) gene locus. J. Bacteriol. 181:3144-3154.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 3144-3154
-
-
Whatmore, A.M.1
Barcus, V.A.2
Dowson, C.G.3
-
31
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang, Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13:555-556.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 555-556
-
-
Yang, Z.1
|