-
1
-
-
70349327329
-
Multisubstrate-activity space and quasi-species in enzyme evolution: Ohno's dilemma, promiscuity and functional orthogonality
-
Mannervik B, Runarsdottir A, Kurtovic S (2009) Multisubstrate-activity space and quasi-species in enzyme evolution: Ohno's dilemma, promiscuity and functional orthogonality. Biochem Soc Trans 37:740-744.
-
(2009)
Biochem Soc Trans
, vol.37
, pp. 740-744
-
-
Mannervik, B.1
Runarsdottir, A.2
Kurtovic, S.3
-
2
-
-
65249177164
-
Directed enzyme evolution: Climbing fitness peaks one amino acid at a time
-
Tracewell CA, Arnold FH (2009) Directed enzyme evolution: climbing fitness peaks one amino acid at a time. Curr Opin Chem Biol 13:3-9.
-
(2009)
Curr Opin Chem Biol
, vol.13
, pp. 3-9
-
-
Tracewell, C.A.1
Arnold, F.H.2
-
3
-
-
34247131307
-
Enzyme promiscuity: Mechanism and applications
-
Hult K, Berglund P (2007) Enzyme promiscuity: mechanism and applications. Trends Biotechnol 25:231-238.
-
(2007)
Trends Biotechnol
, vol.25
, pp. 231-238
-
-
Hult, K.1
Berglund, P.2
-
4
-
-
59849106371
-
Protein promiscuity and its implications for biotechnology
-
Nobeli I, Favia AD, Thornton JM (2009) Protein promiscuity and its implications for biotechnology. Nat Biotechnol 27:157-167.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 157-167
-
-
Nobeli, I.1
Favia, A.D.2
Thornton, J.M.3
-
6
-
-
51949110360
-
Quantitative exploration of the catalytic landscape separating divergent plant sesquiterpene synthases
-
O'Maille PE, Malone A, Dellas N, Andes Hess B, Jr, Smentek L, Sheehan I, Greenhagen BT, Chappell J, Manning G, Noel JP (2008) Quantitative exploration of the catalytic landscape separating divergent plant sesquiterpene synthases. Nat Chem Biol 4:617-623.
-
(2008)
Nat Chem Biol
, vol.4
, pp. 617-623
-
-
O'Maille, P.E.1
Malone, A.2
Dellas, N.3
Andes Hess Jr, B.4
Smentek, L.5
Sheehan, I.6
Greenhagen, B.T.7
Chappell, J.8
Manning, G.9
Noel, J.P.10
-
7
-
-
49649114289
-
Escape from adaptive conflict after duplication in an anthocyanin pathway gene
-
Des Marais DL, Rausher MD (2008) Escape from adaptive conflict after duplication in an anthocyanin pathway gene. Nature 454:762-765.
-
(2008)
Nature
, vol.454
, pp. 762-765
-
-
Des Marais, D.L.1
Rausher, M.D.2
-
8
-
-
11244281311
-
The 'evolvability' of promiscuous protein functions
-
Aharoni A, Gaidukov L, Khersonsky O, Mc QGS, Roodveldt C, Tawfik DS (2005) The 'evolvability' of promiscuous protein functions. Nat Genet 37:73-76.
-
(2005)
Nat Genet
, vol.37
, pp. 73-76
-
-
Aharoni, A.1
Gaidukov, L.2
Khersonsky, O.3
Mc, Q.G.S.4
Roodveldt, C.5
Tawfik, D.S.6
-
9
-
-
0242585508
-
Occurrence of a putative ancient-like isomerase involved in histidine and tryptophan biosynthesis
-
Barona-Gomez F, Hodgson DA (2003) Occurrence of a putative ancient-like isomerase involved in histidine and tryptophan biosynthesis. EMBO Rep 4:296-300.
-
(2003)
EMBO Rep
, vol.4
, pp. 296-300
-
-
Barona-Gomez, F.1
Hodgson, D.A.2
-
10
-
-
14644416029
-
Two-fold repeated (betaalpha)4 half-barrels may provide a molecular tool for dual substrate specificity
-
Kuper J, Doenges C, Wilmanns M (2005) Two-fold repeated (betaalpha)4 half-barrels may provide a molecular tool for dual substrate specificity. EMBO Rep 6: 134-139.
-
(2005)
EMBO Rep
, vol.6
, pp. 134-139
-
-
Kuper, J.1
Doenges, C.2
Wilmanns, M.3
-
11
-
-
36048968479
-
The structure/function relationship of a dual-substrate (betaalpha)8-isomerase
-
Wright H, Noda-Garcia L, Ochoa-Leyva A, Hodgson DA, Fulop V, Barona-Gomez F (2008) The structure/function relationship of a dual-substrate (betaalpha)8-isomerase. Biochem Biophys Res Commun 365:16-21.
-
(2008)
Biochem Biophys Res Commun
, vol.365
, pp. 16-21
-
-
Wright, H.1
Noda-Garcia, L.2
Ochoa-Leyva, A.3
Hodgson, D.A.4
Fulop, V.5
Barona-Gomez, F.6
-
12
-
-
62649156400
-
Protein design through systematic catalytic loop exchange in the (beta/alpha)8 fold
-
Ochoa-Leyva A, Soberon X, Sanchez F, Arguello M, Montero-Moran G, Saab-Rincon G (2009) Protein design through systematic catalytic loop exchange in the (beta/alpha)8 fold. J Mol Biol 387:949-964.
-
(2009)
J Mol Biol
, vol.387
, pp. 949-964
-
-
Ochoa-Leyva, A.1
Soberon, X.2
Sanchez, F.3
Arguello, M.4
Montero-Moran, G.5
Saab-Rincon, G.6
-
13
-
-
7444239646
-
Expression, purification and preliminary crystallographic analysis of phosphoribosyl isomerase (PriA) from Streptomyces coelicolor
-
Wright H, Barona-Gomez F, Hodgson DA, Fulop V (2004) Expression, purification and preliminary crystallographic analysis of phosphoribosyl isomerase (PriA) from Streptomyces coelicolor. Acta Cryst D60:534-536.
-
(2004)
Acta Cryst
, vol.D60
, pp. 534-536
-
-
Wright, H.1
Barona-Gomez, F.2
Hodgson, D.A.3
Fulop, V.4
-
14
-
-
84944812409
-
Improved Fourier coefficients for maps using phases from partial structures with errors
-
Read RJ (1986) Improved Fourier coefficients for maps using phases from partial structures with errors. Acta Cryst A42:140-149.
-
(1986)
Acta Cryst
, vol.A42
, pp. 140-149
-
-
Read, R.J.1
-
15
-
-
0026244229
-
Molscript-a program to produce both detailed and schematic plots of protein structures
-
Kraulis PJ (1991) Molscript-a program to produce both detailed and schematic plots of protein structures. J Appl Cryst 24:946-950.
-
(1991)
J Appl Cryst
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
16
-
-
0030729838
-
An extensively modified version of MolScript that includes greatly enhanced coloring capabilities
-
Esnouf RM (1997) An extensively modified version of MolScript that includes greatly enhanced coloring capabilities. J Mol Graphics Model 15:132.
-
(1997)
J Mol Graphics Model
, vol.15
, pp. 132
-
-
Esnouf, R.M.1
-
17
-
-
0028057108
-
Raster3d Version-2.0-a program for photorealistic molecular graphics
-
Merritt EA, Murphy MEP (1994) Raster3d Version-2.0-a program for photorealistic molecular graphics. Acta Cryst D50:869-873.
-
(1994)
Acta Cryst
, vol.D50
, pp. 869-873
-
-
Merritt, E.A.1
Murphy, M.E.P.2
-
18
-
-
0037044193
-
Two (betaalpha)(8)-barrel enzymes of histidine and tryptophan biosynthesis have similar reaction mechanisms and common strategies for protecting their labile substrates
-
Henn-Sax M, Thoma R, Schmidt S, Hennig M, Kirschner K, Sterner R (2002) Two (betaalpha)(8)-barrel enzymes of histidine and tryptophan biosynthesis have similar reaction mechanisms and common strategies for protecting their labile substrates. Biochemistry 41: 12032-12042.
-
(2002)
Biochemistry
, vol.41
, pp. 12032-12042
-
-
Henn-Sax, M.1
Thoma, R.2
Schmidt, S.3
Hennig, M.4
Kirschner, K.5
Sterner, R.6
-
19
-
-
44949201614
-
Redesigning enzymes based on adaptive evolution for optimal function in synthetic metabolic pathways
-
Yoshikuni Y, Dietrich JA, Nowroozi FF, Babbitt PC, Keasling JD (2008) Redesigning enzymes based on adaptive evolution for optimal function in synthetic metabolic pathways. Chem Biol 15:607-618.
-
(2008)
Chem Biol
, vol.15
, pp. 607-618
-
-
Yoshikuni, Y.1
Dietrich, J.A.2
Nowroozi, F.F.3
Babbitt, P.C.4
Keasling, J.D.5
-
20
-
-
0017272554
-
Enzyme recruitment in evolution of new function
-
Jensen RA (1976) Enzyme recruitment in evolution of new function. Annu Rev Microbiol 30:409-425.
-
(1976)
Annu Rev Microbiol
, vol.30
, pp. 409-425
-
-
Jensen, R.A.1
-
21
-
-
66349134420
-
Role of loop-loop interactions in coordinating motions and enzymatic function in triosephosphate isomerase
-
Wang Y, Berlow RB, Loria JP (2009) Role of loop-loop interactions in coordinating motions and enzymatic function in triosephosphate isomerase. Biochemistry 48:4548-4556.
-
(2009)
Biochemistry
, vol.48
, pp. 4548-4556
-
-
Wang, Y.1
Berlow, R.B.2
Loria, J.P.3
-
22
-
-
31544477181
-
Design and evolution of new catalytic activity with an existing protein scaffold
-
Park HS, Nam SH, Lee JK, Yoon CN, Mannervik B, Benkovic SJ, Kim HS (2006) Design and evolution of new catalytic activity with an existing protein scaffold. Science 311:535-538.
-
(2006)
Science
, vol.311
, pp. 535-538
-
-
Park, H.S.1
Nam, S.H.2
Lee, J.K.3
Yoon, C.N.4
Mannervik, B.5
Benkovic, S.J.6
Kim, H.S.7
-
23
-
-
70350729303
-
The flexibility of a distant loop modulates active site motion and product release in ribonuclease A
-
Doucet N, Watt ED, Loria JP (2009) The flexibility of a distant loop modulates active site motion and product release in ribonuclease A. Biochemistry 48:7160-7168.
-
(2009)
Biochemistry
, vol.48
, pp. 7160-7168
-
-
Doucet, N.1
Watt, E.D.2
Loria, J.P.3
-
24
-
-
0038148710
-
Conformational diversity and protein evolution-a 60-year-old hypothesis revisited
-
James LC, Tawfik DS (2003) Conformational diversity and protein evolution-a 60-year-old hypothesis revisited. Trends Biochem Sci 28:361-368.
-
(2003)
Trends Biochem Sci
, vol.28
, pp. 361-368
-
-
James, L.C.1
Tawfik, D.S.2
-
25
-
-
64849101493
-
Protein dynamism and evolvability
-
Tokuriki N, Tawfik DS (2009) Protein dynamism and evolvability. Science 324:203-207.
-
(2009)
Science
, vol.324
, pp. 203-207
-
-
Tokuriki, N.1
Tawfik, D.S.2
-
26
-
-
2142686644
-
Site-directed mutagenesis using the megaprimer method
-
Xu Z, Colosimo A, Gruenert DC (2003) Site-directed mutagenesis using the megaprimer method. Methods Mol Biol 235:203-207.
-
(2003)
Methods Mol Biol
, vol.235
, pp. 203-207
-
-
Xu, Z.1
Colosimo, A.2
Gruenert, D.C.3
-
27
-
-
0029048523
-
Phosphoribosyl anthranilate isomerase catalyzes a reversible amadori reaction
-
Hommel U, Eberhard M, Kirschner K (1995) Phosphoribosyl anthranilate isomerase catalyzes a reversible amadori reaction. Biochemistry 34:5429-5439.
-
(1995)
Biochemistry
, vol.34
, pp. 5429-5439
-
-
Hommel, U.1
Eberhard, M.2
Kirschner, K.3
-
28
-
-
0028205868
-
A plasmid-based approach for the synthesis of a histidine biosynthetic intermediate
-
Davisson VJ, Deras IL, Hamilton SE, Moore LL (1994) A plasmid-based approach for the synthesis of a histidine biosynthetic intermediate. J Org Chem 59: 137-143.
-
(1994)
J Org Chem
, vol.59
, pp. 137-143
-
-
Davisson, V.J.1
Deras, I.L.2
Hamilton, S.E.3
Moore, L.L.4
-
29
-
-
0033026970
-
Efficient expression, purification and crystallisation of two hyperthermostable enzymes of histidine biosynthesis
-
Thoma R, Obmolova G, Lang DA, Schwander M, Jeno P, Sterner R, Wilmanns M (1999) Efficient expression, purification and crystallisation of two hyperthermostable enzymes of histidine biosynthesis. FEBS Lett 454: 1-6.
-
(1999)
FEBS Lett
, vol.454
, pp. 1-6
-
-
Thoma, R.1
Obmolova, G.2
Lang, D.A.3
Schwander, M.4
Jeno, P.5
Sterner, R.6
Wilmanns, M.7
-
30
-
-
0344848664
-
The hyperthermostable indoleglycerol phosphate synthase from Thermotoga maritima is destabilized by mutational disruption of two solvent-exposed salt bridges
-
Merz A, Knochel T, Jansonius JN, Kirschner K (1999) The hyperthermostable indoleglycerol phosphate synthase from Thermotoga maritima is destabilized by mutational disruption of two solvent-exposed salt bridges. J Mol Biol 288:753-763.
-
(1999)
J Mol Biol
, vol.288
, pp. 753-763
-
-
Merz, A.1
Knochel, T.2
Jansonius, J.N.3
Kirschner, K.4
-
31
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Macromol Cryst A 276:307-326.
-
(1997)
Macromol Cryst
, vol.A 276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
32
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov GN, Vagin AA, Dodson EJ (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Cryst D 53:240- 255.
-
(1997)
Acta Cryst D
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
33
-
-
84889120137
-
Improved methods for building protein models in electron-density maps and the location of errors in these models
-
Jones TA, Zou JY, Cowan SW, Kjeldgaard M (1991) Improved methods for building protein models in electron-density maps and the location of errors in these models. Acta Cryst A 47:110-119.
-
(1991)
Acta Cryst A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
34
-
-
0030809260
-
wARP: Improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models
-
Perrakis A, Sixma TK, Wilson KS, Lamzin VS (1997) wARP: Improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models. Acta Cryst D 53:448-455.
-
(1997)
Acta Cryst D
, vol.53
, pp. 448-455
-
-
Perrakis, A.1
Sixma, T.K.2
Wilson, K.S.3
Lamzin, V.S.4
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