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Volumn 6, Issue 2, 2005, Pages 134-139

Two-fold repeated (βα)4 half-barrels may provide a molecular tool for dual substrate specificity

Author keywords

Evolution of ( )8 barrels; Phosphoribosyl isomerase; Tryptophan and histidine biosynthesis

Indexed keywords

BACTERIAL PROTEIN; BETA,ALPHA4 HALF BARREL PROTEIN; ISOMERASE; UNCLASSIFIED DRUG; ADENOSINE TRIPHOSPHATASE; HELICASE;

EID: 14644416029     PISSN: 1469221X     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.embor.7400330     Document Type: Article
Times cited : (21)

References (28)
  • 2
    • 0242585508 scopus 로고    scopus 로고
    • Occurrence of a putative ancient-like isomerase involved in histidine and tryptophan biosynthesis
    • Barona-Gomez F, Hodgson DA (2003) Occurrence of a putative ancient-like isomerase involved in histidine and tryptophan biosynthesis. EMBO Rep 4: 296-300
    • (2003) EMBO Rep. , vol.4 , pp. 296-300
    • Barona-Gomez, F.1    Hodgson, D.A.2
  • 3
    • 0027412196 scopus 로고
    • ALSCRIPT: A tool to format multiple sequence alignments
    • Barton GJ (1993) ALSCRIPT: a tool to format multiple sequence alignments. Protein Eng 6: 37-40
    • (1993) Protein Eng. , vol.6 , pp. 37-40
    • Barton, G.J.1
  • 4
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • CCP4
    • CCP4 (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr D 50: 760-763
    • (1994) Acta Crystallogr. D , vol.50 , pp. 760-763
  • 6
    • 0038614879 scopus 로고    scopus 로고
    • Toward understanding the mechanism of the complex cyclization reaction catalyzed by imidazole glycerolphosphate synthase: Crystal structures of a ternary complex and the free enzyme
    • Chaudhuri BN, Lange SC, Myers RS, Davisson VJ, Smith JL (2003) Toward understanding the mechanism of the complex cyclization reaction catalyzed by imidazole glycerolphosphate synthase: crystal structures of a ternary complex and the free enzyme. Biochemistry 42: 7003-7012
    • (2003) Biochemistry , vol.42 , pp. 7003-7012
    • Chaudhuri, B.N.1    Lange, S.C.2    Myers, R.S.3    Davisson, V.J.4    Smith, J.L.5
  • 7
    • 0025102221 scopus 로고
    • A set of programs for analysis of kinetic and equilibrium data
    • Eberhard M (1990) A set of programs for analysis of kinetic and equilibrium data. Comput Appl Biosci 6: 213-221
    • (1990) Comput. Appl. Biosci. , vol.6 , pp. 213-221
    • Eberhard, M.1
  • 9
    • 0029619259 scopus 로고
    • Knowledge-based protein secondary structure assignment
    • Frishman D, Argos P (1995) Knowledge-based protein secondary structure assignment. Proteins 23: 566-579
    • (1995) Proteins , vol.23 , pp. 566-579
    • Frishman, D.1    Argos, P.2
  • 10
    • 0034923923 scopus 로고    scopus 로고
    • Divergent evolution of enzymatic function: Mechanistically diverse superfamilies and functionally distinct suprafamilies
    • Gerlt JA, Babbitt PC (2001) Divergent evolution of enzymatic function: mechanistically diverse superfamilies and functionally distinct suprafamilies. Annu Rev Biochem 70: 209-246
    • (2001) Annu. Rev. Biochem. , vol.70 , pp. 209-246
    • Gerlt, J.A.1    Babbitt, P.C.2
  • 11
    • 0037044193 scopus 로고    scopus 로고
    • Two (βα)(8)-barrel enzymes of histidine and tryptophan biosynthesis have similar reaction mechanisms and common strategies for protecting their labile substrates
    • Henn-Sax M, Thoma R, Schmidt S, Hennig M, Kirschner K, Sterner R (2002) Two (βα)(8)-barrel enzymes of histidine and tryptophan biosynthesis have similar reaction mechanisms and common strategies for protecting their labile substrates. Biochemistry 41: 12032-12042
    • (2002) Biochemistry , vol.41 , pp. 12032-12042
    • Henn-Sax, M.1    Thoma, R.2    Schmidt, S.3    Hennig, M.4    Kirschner, K.5    Sterner, R.6
  • 13
    • 0029048523 scopus 로고
    • Phosphoribosyl anthranilate isomerase catalyzes a reversible amadori reaction
    • Hommel U, Eberhard M, Kirschner K (1995) Phosphoribosyl anthranilate isomerase catalyzes a reversible amadori reaction. Biochemistry 34: 5429-5439
    • (1995) Biochemistry , vol.34 , pp. 5429-5439
    • Hommel, U.1    Eberhard, M.2    Kirschner, K.3
  • 14
    • 0017272554 scopus 로고
    • Enzyme recruitment in evolution of new function
    • Jensen RA (1976) Enzyme recruitment in evolution of new function. Annu Rev Microbiol 30: 409-425
    • (1976) Annu. Rev. Microbiol. , vol.30 , pp. 409-425
    • Jensen, R.A.1
  • 16
    • 1842781469 scopus 로고    scopus 로고
    • Protein structure comparison in 3D based on secondary structure matching (SSM) followed by Ca alignment, scored by a new structural similarity function
    • Vienna, Kungl AJ, Kungl PJ (eds)
    • Krissinel E, Henrick K (2003) Protein structure comparison in 3D based on secondary structure matching (SSM) followed by Ca alignment, scored by a new structural similarity function. In Proceedings of the 5th International Conference on Molecular Structural Biology, Vienna, Kungl AJ, Kungl PJ (eds), 88
    • (2003) Proceedings of the 5th International Conference on Molecular Structural Biology , pp. 88
    • Krissinel, E.1    Henrick, K.2
  • 17
    • 0034284955 scopus 로고    scopus 로고
    • Structural evidence for evolution of the β/α barrel scaffold by gene duplication and fusion
    • Lang D, Thoma R, Henn-Sax M, Sterner R, Wilmanns M (2000) Structural evidence for evolution of the β/α barrel scaffold by gene duplication and fusion. Science 289: 1546-1550
    • (2000) Science , vol.289 , pp. 1546-1550
    • Lang, D.1    Thoma, R.2    Henn-Sax, M.3    Sterner, R.4    Wilmanns, M.5
  • 18
    • 1642345454 scopus 로고    scopus 로고
    • Interconverting the catalytic activities of (β)(8)-barrel enzymes from different metabolic pathways: Sequence requirements and molecular analysis
    • Leopoldseder S, Claren J, Jurgens C, Sterner R (2004) Interconverting the catalytic activities of (β)(8)-barrel enzymes from different metabolic pathways: sequence requirements and molecular analysis. J Mol Biol 337: 871-879
    • (2004) J. Mol. Biol. , vol.337 , pp. 871-879
    • Leopoldseder, S.1    Claren, J.2    Jurgens, C.3    Sterner, R.4
  • 20
    • 0027764344 scopus 로고
    • Protein sequence alignments: A strategy for the hierarchical analysis of residue conservation
    • Livingstone CD, Barton GJ (1993) Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation. Comput Appl Biosci 9: 745-756
    • (1993) Comput. Appl. Biosci. , vol.9 , pp. 745-756
    • Livingstone, C.D.1    Barton, G.J.2
  • 21
    • 0030924992 scopus 로고    scopus 로고
    • Refinement of macromolecular structures by the maximum-likelihood method
    • Murshudov GN, Vagin AA, Dodson EJ (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D 53: 240-255
    • (1997) Acta Crystallogr. D , vol.53 , pp. 240-255
    • Murshudov, G.N.1    Vagin, A.A.2    Dodson, E.J.3
  • 22
    • 0037398732 scopus 로고    scopus 로고
    • Missing genes in metabolic pathways: A competitive genomics approach
    • Osterman A, Overbeek R (2003) Missing genes in metabolic pathways: a competitive genomics approach. Curr Opin Chem Biol 7: 238-251
    • (2003) Curr. Opin. Chem. Biol. , vol.7 , pp. 238-251
    • Osterman, A.1    Overbeek, R.2
  • 23
    • 0030035418 scopus 로고    scopus 로고
    • A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome
    • Redenbach M, Kieser HM, Denapaite D, Eichner A, Cullum J, Kinashi H, Hopwood DA (1996) A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome. Mol Microbiol 21: 77-96
    • (1996) Mol. Microbiol. , vol.21 , pp. 77-96
    • Redenbach, M.1    Kieser, H.M.2    Denapaite, D.3    Eichner, A.4    Cullum, J.5    Kinashi, H.6    Hopwood, D.A.7
  • 24
    • 0029912086 scopus 로고    scopus 로고
    • Phosphoribosyl anthranilate isomerase from Thermotoga maritima is an extremely stable and active homodimer
    • Sterner R, Kleemann GR, Szadkowski H, Lustig A, Hennig M, Kirschner K (1996) Phosphoribosyl anthranilate isomerase from Thermotoga maritima is an extremely stable and active homodimer. Protein Sci 5: 2000-2008
    • (1996) Protein Sci. , vol.5 , pp. 2000-2008
    • Sterner, R.1    Kleemann, G.R.2    Szadkowski, H.3    Lustig, A.4    Hennig, M.5    Kirschner, K.6
  • 25
    • 0000560808 scopus 로고    scopus 로고
    • MOLREP: An automated program for molecular replacement
    • Vagin A, Teplyakov A (1997) MOLREP: an automated program for molecular replacement. J Appl Crystallogr 30: 1022-1025
    • (1997) J. Appl. Crystallogr. , vol.30 , pp. 1022-1025
    • Vagin, A.1    Teplyakov, A.2
  • 27
    • 0035896377 scopus 로고    scopus 로고
    • The TIM-barrel fold: A versatile framework for efficient enzymes
    • Wierenga RK (2001) The TIM-barrel fold: a versatile framework for efficient enzymes. FEBS Lett 492: 193-198
    • (2001) FEBS Lett. , vol.492 , pp. 193-198
    • Wierenga, R.K.1
  • 28
    • 0026014458 scopus 로고
    • Structural conservation in parallel β/α-barrel enzymes that catalyze three sequential reactions in the pathway of tryptophan biosynthesis
    • Wilmanns M, Hyde CC, Davies DR, Kirschner K, Jansonius JN (1991) Structural conservation in parallel β/α-barrel enzymes that catalyze three sequential reactions in the pathway of tryptophan biosynthesis. Biochemistry 30: 9161-9169
    • (1991) Biochemistry , vol.30 , pp. 9161-9169
    • Wilmanns, M.1    Hyde, C.C.2    Davies, D.R.3    Kirschner, K.4    Jansonius, J.N.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.