-
1
-
-
33847077659
-
Beyond the sequence: Cellular organization of genome function
-
DOI 10.1016/j.cell.2007.01.028, PII S0092867407001262
-
T Misteli 2007 Beyond the sequence: cellular organization of genome function Cell. 128 787 800 10.1016/j.cell.2007.01.028 17320514 (Pubitemid 46273571)
-
(2007)
Cell
, vol.128
, Issue.4
, pp. 787-800
-
-
Misteli, T.1
-
2
-
-
33847076849
-
Chromatin modifications and their function
-
DOI 10.1016/j.cell.2007.02.005, PII S0092867407001845
-
T Kouzarides 2007 Chromatin modifications and their function Cell. 128 693 705 10.1016/j.cell.2007.02.005 17320507 (Pubitemid 46273577)
-
(2007)
Cell
, vol.128
, Issue.4
, pp. 693-705
-
-
Kouzarides, T.1
-
3
-
-
0033588973
-
Nuclear organization of mammalian genomes: Polar chromosome territories build up functionally distinct higher order compartments
-
DOI 10.1083/jcb.146.6.1211
-
N Sadoni S Langer C Fauth, et al. 1999 Nuclear organization of mammalian genomes. Polar chromosome territories build up functionally distinct higher order compartments J Cell Biol. 146 1211 1226 10.1083/jcb.146.6.1211 10491386 (Pubitemid 29477690)
-
(1999)
Journal of Cell Biology
, vol.146
, Issue.6
, pp. 1211-1226
-
-
Sadoni, N.1
Langer, S.2
Fauth, C.3
Bernardi, G.4
Cremer, T.5
Turner, B.M.6
Zink, D.7
-
4
-
-
85052429852
-
Multicolor 3D Fluorescence in Situ Hybridization for Imaging Interphase Chromosomes
-
10.1007/978-1-59745-406-3-15 18951171
-
M Cremer F Grasser C Lanctot, et al. 2008 Multicolor 3D Fluorescence In Situ Hybridization for Imaging Interphase Chromosomes Methods Mol Biol. 463 205 239 10.1007/978-1-59745-406-3-15 18951171
-
(2008)
Methods Mol Biol.
, vol.463
, pp. 205-239
-
-
Cremer, M.1
Grasser, F.2
Lanctot, C.3
-
6
-
-
33847386173
-
Chromosome organization: new facts, new models
-
DOI 10.1016/j.tcb.2006.12.006, PII S0962892406003588
-
MR Branco A Pombo 2007 Chromosome organization: new facts, new models Trends Cell Biol. 17 127 134 10.1016/j.tcb.2006.12.006 17197184 (Pubitemid 46343873)
-
(2007)
Trends in Cell Biology
, vol.17
, Issue.3
, pp. 127-134
-
-
Branco, M.R.1
Pombo, A.2
-
7
-
-
29244451509
-
Common themes and cell type specific variations of higher order chromatin arrangements in the mouse
-
DOI 10.1186/1471-2121-6-44
-
R Mayer A Brero J von Hase T Schroeder T Cremer S Dietzel 2005 Common themes and cell type specific variations of higher order chromatin arrangements in the mouse BMC Cell Biol. 6 44 10.1186/1471-2121-6-44 16336643 (Pubitemid 41819448)
-
(2005)
BMC Cell Biology
, vol.6
, pp. 44
-
-
Mayer, R.1
Brero, A.2
Von Hase, J.3
Schroeder, T.4
Cremer, T.5
Dietzel, S.6
-
8
-
-
34250159068
-
The ins and outs of gene regulation and chromosome territory organisation
-
DOI 10.1016/j.ceb.2007.04.016, PII S0955067407000695, Nucleus and Gene Expression
-
E Heard W Bickmore 2007 The ins and outs of gene regulation and chromosome territory organisation Curr Opin Cell Biol. 19 311 316 10.1016/j.ceb.2007.04.016 17467967 (Pubitemid 46899518)
-
(2007)
Current Opinion in Cell Biology
, vol.19
, Issue.3
, pp. 311-316
-
-
Heard, E.1
Bickmore, W.2
-
9
-
-
34250172721
-
The three-dimensional structure of human interphase chromosomes is related to the transcriptome map
-
DOI 10.1128/MCB.00208-07
-
S Goetze J Mateos-Langerak HJ Gierman, et al. 2007 The three-dimensional structure of human interphase chromosomes is related to the transcriptome map Mol Cell Biol. 27 4475 4487 10.1128/MCB.00208-07 17420274 (Pubitemid 46906570)
-
(2007)
Molecular and Cellular Biology
, vol.27
, Issue.12
, pp. 4475-4487
-
-
Goetze, S.1
Mateos-Langerak, J.2
Gierman, H.J.3
De Leeuw, W.4
Giromus, O.5
Indemans, M.H.G.6
Koster, J.7
Ondrej, V.8
Versteeg, R.9
Van Driel, R.10
-
10
-
-
0037023361
-
Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development
-
DOI 10.1126/science.1068768
-
ST Kosak JA Skok KL Medina, et al. 2002 Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development Science. 296 158 162 10.1126/science.1068768 11935030 (Pubitemid 34280078)
-
(2002)
Science
, vol.296
, Issue.5565
, pp. 158-162
-
-
Kosak, S.T.1
Skok, J.A.2
Medina, K.L.3
Riblet, R.4
Le Beau, M.M.5
Fisher, A.G.6
Singh, H.7
-
11
-
-
0031437119
-
Association of transcriptionally silent genes with Ikaros complexes at centromeric heterochromatin
-
DOI 10.1016/S0092-8674(00)80472-9
-
KE Brown SS Guest ST Smale K Hahm M Merkenschlager AG Fisher 1997 Association of transcriptionally silent genes with Ikaros complexes at centromeric heterochromatin Cell. 91 845 854 10.1016/S0092-8674(00)80472-9 9413993 (Pubitemid 28007740)
-
(1997)
Cell
, vol.91
, Issue.6
, pp. 845-854
-
-
Brown, K.E.1
Guest, S.S.2
Smale, S.T.3
Hahm, K.4
Merkenschlager, M.5
Fisher, A.G.6
-
13
-
-
2442695407
-
Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription
-
DOI 10.1101/gad.292104
-
S Chambeyron WA Bickmore 2004 Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription Genes Dev. 18 1119 1130 10.1101/gad.292104 15155579 (Pubitemid 38669033)
-
(2004)
Genes and Development
, vol.18
, Issue.10
, pp. 1119-1130
-
-
Chambeyron, S.1
Bickmore, W.A.2
-
14
-
-
35548965486
-
P-STAT1 mediates higher-order chromatin remodelling of the human MHC in response to IFNγ
-
DOI 10.1242/jcs.012328
-
R Christova T Jones PJ Wu, et al. 2007 P-STAT1 mediates higher-order chromatin remodelling of the human MHC in response to IFNgamma J Cell Sci. 120 3262 3270 10.1242/jcs.012328 17726060 (Pubitemid 350018417)
-
(2007)
Journal of Cell Science
, vol.120
, Issue.18
, pp. 3262-3270
-
-
Christova, R.1
Jones, T.2
Wu, P.-J.3
Bolzer, A.4
Costa-Pereira, A.P.5
Watling, D.6
Kerr, I.M.7
Sheer, D.8
-
15
-
-
0042378999
-
A genetic analysis of chromosome territory looping: Diverse roles for distal regulatory elements
-
DOI 10.1023/A:1024939130361
-
T Ragoczy A Telling T Sawado M Groudine ST Kosak 2003 A genetic analysis of chromosome territory looping: diverse roles for distal regulatory elements Chromosome Res. 11 513 525 10.1023/A:1024939130361 12971726 (Pubitemid 37041210)
-
(2003)
Chromosome Research
, vol.11
, Issue.5
, pp. 513-525
-
-
Ragoczy, T.1
Telling, A.2
Sawado, T.3
Groudine, M.4
Kosak, S.T.5
-
16
-
-
5444243359
-
Active genes dynamically colocalize to shared sites of ongoing transcription
-
DOI 10.1038/ng1423
-
CS Osborne L Chakalova KE Brown, et al. 2004 Active genes dynamically colocalize to shared sites of ongoing transcription Nat Genet. 36 1065 1071 10.1038/ng1423 15361872 (Pubitemid 41184467)
-
(2004)
Nature Genetics
, vol.36
, Issue.10
, pp. 1065-1071
-
-
Osborne, C.S.1
Chakalova, L.2
Brown, K.E.3
Carter, D.4
Horton, A.5
Debrand, E.6
Goyenechea, B.7
Mitchell, J.A.8
Lopes, S.9
Reik, W.10
Fraser, P.11
-
17
-
-
52249111620
-
Association between active genes occurs at nuclear speckles and is modulated by chromatin environment
-
10.1083/jcb.200803174 18809724
-
JM Brown J Green RP das Neves, et al. 2008 Association between active genes occurs at nuclear speckles and is modulated by chromatin environment J Cell Biol. 182 1083 1097 10.1083/jcb.200803174 18809724
-
(2008)
J Cell Biol.
, vol.182
, pp. 1083-1097
-
-
Brown, J.M.1
Green, J.2
Das Neves, R.P.3
-
18
-
-
58049208232
-
Enhancing nuclear receptor-induced transcription requires nuclear motor and LSD1-dependent gene networking in interchromatin granules
-
10.1073/pnas.0810634105 19052240
-
Q Hu YS Kwon E Nunez, et al. 2008 Enhancing nuclear receptor-induced transcription requires nuclear motor and LSD1-dependent gene networking in interchromatin granules Proc Natl Acad Sci U S A. 105 19199 19204 10.1073/pnas.0810634105 19052240
-
(2008)
Proc Natl Acad Sci U S A.
, vol.105
, pp. 19199-19204
-
-
Hu, Q.1
Kwon, Y.S.2
Nunez, E.3
-
19
-
-
67649766870
-
Transcription factories: Gene expression in unions?
-
10.1038/nrg2592 19506577
-
H Sutherland WA Bickmore 2009 Transcription factories: gene expression in unions? Nat Rev Genet. 10 457 466 10.1038/nrg2592 19506577
-
(2009)
Nat Rev Genet.
, vol.10
, pp. 457-466
-
-
Sutherland, H.1
Bickmore, W.A.2
-
20
-
-
73349090560
-
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
-
10.1038/ng.496 20010836
-
S Schoenfelder T Sexton L Chakalova, et al. 2010 Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells Nat Genet. 42 53 61 10.1038/ng.496 20010836
-
(2010)
Nat Genet.
, vol.42
, pp. 53-61
-
-
Schoenfelder, S.1
Sexton, T.2
Chakalova, L.3
-
21
-
-
20444494936
-
Interchromosomal associations between alternatively expressed loci
-
DOI 10.1038/nature03574
-
CG Spilianakis MD Lalioti T Town GR Lee RA Flavell 2005 Interchromosomal associations between alternatively expressed loci Nature. 435 637 645 10.1038/nature03574 15880101 (Pubitemid 40825504)
-
(2005)
Nature
, vol.435
, Issue.7042
, pp. 637-645
-
-
Spilianakis, C.G.1
Lalioti, M.D.2
Town, T.3
Lee, G.R.4
Flavell, R.A.5
-
22
-
-
35548953639
-
Inter-chromosomal gene regulation in the mammalian cell nucleus
-
DOI 10.1016/j.gde.2007.07.009, PII S0959437X07001396, Differentiation and Gene Regulation
-
W de Laat F Grosveld 2007 Inter-chromosomal gene regulation in the mammalian cell nucleus Curr Opin Genet Dev. 17 456 464 10.1016/j.gde.2007.07.009 17884460 (Pubitemid 350016893)
-
(2007)
Current Opinion in Genetics and Development
, vol.17
, Issue.5
, pp. 456-464
-
-
De Laat, W.1
Grosveld, F.2
-
23
-
-
59849110912
-
Chromatin modifications in hematopoietic multipotent and committed progenitors are independent of gene subnuclear positioning relative to repressive compartments
-
10.1634/stemcells.2008-0755 18974210
-
C Guillemin M Maleszewska A Guais, et al. 2009 Chromatin modifications in hematopoietic multipotent and committed progenitors are independent of gene subnuclear positioning relative to repressive compartments Stem Cells. 27 108 115 10.1634/stemcells.2008-0755 18974210
-
(2009)
Stem Cells.
, vol.27
, pp. 108-115
-
-
Guillemin, C.1
Maleszewska, M.2
Guais, A.3
-
25
-
-
0032490917
-
Perinuclear localization of chromatin facilitates transcriptional silencing
-
DOI 10.1038/29100
-
ED Andrulis AM Neiman DC Zappulla R Sternglanz 1998 Perinuclear localization of chromatin facilitates transcriptional silencing Nature. 394 592 595 10.1038/29100 9707122 (Pubitemid 28366836)
-
(1998)
Nature
, vol.394
, Issue.6693
, pp. 592-595
-
-
Andrulis, E.D.1
Neiman, A.M.2
Zappulla, D.C.3
Sternglanz, R.4
-
26
-
-
38349043904
-
A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence
-
10.1083/jcb.200706060 18195101
-
RI Kumaran DL Spector 2008 A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence J Cell Biol. 180 51 65 10.1083/jcb.200706060 18195101
-
(2008)
J Cell Biol.
, vol.180
, pp. 51-65
-
-
Kumaran, R.I.1
Spector, D.L.2
-
27
-
-
41949121084
-
Recruitment to the nuclear periphery can alter expression of genes in human cells
-
10.1371/journal.pgen.1000039 18369458
-
LE Finlan D Sproul I Thomson, et al. 2008 Recruitment to the nuclear periphery can alter expression of genes in human cells PLoS Genet. 4 e1000039 10.1371/journal.pgen.1000039 18369458
-
(2008)
PLoS Genet.
, vol.4
, pp. 1000039
-
-
Finlan, L.E.1
Sproul, D.2
Thomson, I.3
-
28
-
-
54949157851
-
Re-positioning genes to the nuclear envelope in mammalian cells: Impact on transcription
-
10.1016/j.tig.2008.08.008 18819723
-
M Ruault M Dubarry A Taddei 2008 Re-positioning genes to the nuclear envelope in mammalian cells: impact on transcription Trends Genet. 24 574 581 10.1016/j.tig.2008.08.008 18819723
-
(2008)
Trends Genet.
, vol.24
, pp. 574-581
-
-
Ruault, M.1
Dubarry, M.2
Taddei, A.3
-
29
-
-
38349080953
-
Locus-specific and activity-independent gene repositioning during early tumorigenesis
-
10.1083/jcb.200708204 18195100
-
KJ Meaburn T Misteli 2008 Locus-specific and activity-independent gene repositioning during early tumorigenesis J Cell Biol. 180 39 50 10.1083/jcb.200708204 18195100
-
(2008)
J Cell Biol.
, vol.180
, pp. 39-50
-
-
Meaburn, K.J.1
Misteli, T.2
-
30
-
-
74049123435
-
Disease-specific gene repositioning in breast cancer
-
10.1083/jcb.200909127 19995938
-
KJ Meaburn PR Gudla S Khan SJ Lockett T Misteli 2009 Disease-specific gene repositioning in breast cancer J Cell Biol. 187 801 12 10.1083/jcb. 200909127 19995938
-
(2009)
J Cell Biol.
, vol.187
, pp. 801-812
-
-
Meaburn, K.J.1
Gudla, P.R.2
Khan, S.3
Lockett, S.J.4
Misteli, T.5
-
31
-
-
69249238070
-
Cell type specific chromosome territory organization in the interphase nucleus of normal and cancer cells
-
10.1002/jcp.21836 19496171
-
NV Marella S Bhattacharya L Mukherjee J Xu R Berezney 2009 Cell type specific chromosome territory organization in the interphase nucleus of normal and cancer cells J Cell Physiol. 221 130 138 10.1002/jcp.21836 19496171
-
(2009)
J Cell Physiol.
, vol.221
, pp. 130-138
-
-
Marella, N.V.1
Bhattacharya, S.2
Mukherjee, L.3
Xu, J.4
Berezney, R.5
-
33
-
-
0030631592
-
Structure and expression of the mouse casein gene locus
-
DOI 10.1007/s003359900338
-
M Rijnkels DA Wheeler HA de Boer FR Pieper 1997 Structure and expression of the mouse casein gene locus Mamm Genome. 8 9 15 10.1007/s003359900338 9021141 (Pubitemid 28060736)
-
(1997)
Mammalian Genome
, vol.8
, Issue.1
, pp. 9-15
-
-
Rijnkels, M.1
Wheeler, D.A.2
De Boer, H.A.3
Pieper, F.R.4
-
34
-
-
51849100265
-
The nuclear localization of WAP and CSN genes is modified by lactogenic hormones in HC11 cells
-
10.1002/jcb.21823 18500724
-
M Ballester C Kress C Hue-Beauvais, et al. 2008 The nuclear localization of WAP and CSN genes is modified by lactogenic hormones in HC11 cells J Cell Biochem. 105 262 270 10.1002/jcb.21823 18500724
-
(2008)
J Cell Biochem.
, vol.105
, pp. 262-270
-
-
Ballester, M.1
Kress, C.2
Hue-Beauvais, C.3
-
35
-
-
39649107723
-
Epigenetic modifications and chromatin loop organization explain the different expression profiles of the Tbrg4, WAP and Ramp3 genes
-
10.1016/j.yexcr.2008.01.001 18255060
-
MB Montazer-Torbati C Hue-Beauvais S Droineau, et al. 2008 Epigenetic modifications and chromatin loop organization explain the different expression profiles of the Tbrg4, WAP and Ramp3 genes Exp Cell Res. 314 975 987 10.1016/j.yexcr.2008.01.001 18255060
-
(2008)
Exp Cell Res.
, vol.314
, pp. 975-987
-
-
Montazer-Torbati, M.B.1
Hue-Beauvais, C.2
Droineau, S.3
-
36
-
-
0034065032
-
Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei
-
10751148
-
EV Volpi E Chevret T Jones, et al. 2000 Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei J Cell Sci. 113 1565 1576 10751148
-
(2000)
J Cell Sci.
, vol.113
, pp. 1565-1576
-
-
Volpi, E.V.1
Chevret, E.2
Jones, T.3
-
37
-
-
0036061468
-
Subchromosomal positioning of the epidermal differentiation complex (EDC) in keratinocyte and lymphoblast interphase nuclei
-
DOI 10.1006/excr.2001.5400
-
RR Williams S Broad D Sheer J Ragoussis 2002 Subchromosomal positioning of the epidermal differentiation complex (EDC) in keratinocyte and lymphoblast interphase nuclei Exp Cell Res. 272 163 175 10.1006/excr.2001.5400 11777341 (Pubitemid 34920684)
-
(2002)
Experimental Cell Research
, vol.272
, Issue.2
, pp. 163-175
-
-
Williams, R.R.E.1
Broad, S.2
Sheer, D.3
Ragoussis, J.4
-
38
-
-
34248593510
-
Nuclear reorganisation and chromatin decondensation are conserved, but distinct, mechanisms linked to Hox gene activation
-
DOI 10.1242/dev.02779
-
C Morey NR Da Silva P Perry WA Bickmore 2007 Nuclear reorganisation and chromatin decondensation are conserved, but distinct, mechanisms linked to Hox gene activation Development. 134 909 919 10.1242/dev.02779 17251268 (Pubitemid 46795682)
-
(2007)
Development
, vol.134
, Issue.5
, pp. 909-919
-
-
Morey, C.1
Da Silva, N.R.2
Perry, P.3
Bickmore, W.A.4
-
39
-
-
45149084413
-
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
-
DOI 10.1038/nature06947, PII NATURE06947
-
L Guelen L Pagie E Brasset, et al. 2008 Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions Nature. 453 948 951 10.1038/nature06947 18463634 (Pubitemid 351832561)
-
(2008)
Nature
, vol.453
, Issue.7197
, pp. 948-951
-
-
Guelen, L.1
Pagie, L.2
Brasset, E.3
Meuleman, W.4
Faza, M.B.5
Talhout, W.6
Eussen, B.H.7
De Klein, A.8
Wessels, L.9
De Laat, W.10
Van Steensel, B.11
-
40
-
-
33644631504
-
The end adjusts the means: Heterochromatin remodelling during terminal cell differentiation
-
DOI 10.1007/s10577-005-1021-6, PII 1021
-
SA Grigoryev YA Bulynko EY Popova 2006 The end adjusts the means: heterochromatin remodelling during terminal cell differentiation Chromosome Res. 14 53 69 10.1007/s10577-005-1021-6 16506096 (Pubitemid 43315779)
-
(2006)
Chromosome Research
, vol.14
, Issue.1
, pp. 53-69
-
-
Grigoryev, S.A.1
Bulynko, Y.A.2
Popova, E.Y.3
-
41
-
-
0032435266
-
Tissue phenotype depends on reciprocal interactions between the extracellular matrix and the structural organization of the nucleus
-
DOI 10.1073/pnas.95.25.14711
-
SA Lelievre VM Weaver JA Nickerson, et al. 1998 Tissue phenotype depends on reciprocal interactions between the extracellular matrix and the structural organization of the nucleus Proc Natl Acad Sci U S A. 95 14711 14716 10.1073/pnas.95.25.14711 9843954 (Pubitemid 29003695)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.25
, pp. 14711-14716
-
-
Lelievre, S.A.1
Weaver, V.M.2
Nickerson, J.A.3
Larabell, C.A.4
Bhaumik, A.5
Petersen, O.W.6
Bissell, M.J.7
-
42
-
-
0029969288
-
Centromeres reposition to the nuclear periphery during L6E9 myogenesis in vitro
-
DOI 10.1006/excr.1996.0082
-
N Chaly SB Munro 1996 Centromeres reposition to the nuclear periphery during L6E9 myogenesis in vitro Exp Cell Res. 223 274 278 10.1006/excr.1996.0082 8601404 (Pubitemid 26089084)
-
(1996)
Experimental Cell Research
, vol.223
, Issue.2
, pp. 274-278
-
-
Chaly, N.1
Munro, S.B.2
-
43
-
-
22344441631
-
Methyl CpG-binding proteins induce large-scale chromatin reorganization during terminal differentiation
-
DOI 10.1083/jcb.200502062
-
A Brero HP Easwaran D Nowak, et al. 2005 Methyl CpG-binding proteins induce large-scale chromatin reorganization during terminal differentiation J Cell Biol. 169 733 743 10.1083/jcb.200502062 15939760 (Pubitemid 41002879)
-
(2005)
Journal of Cell Biology
, vol.169
, Issue.5
, pp. 733-743
-
-
Brero, A.1
Easwaran, H.P.2
Nowak, D.3
Grunewald, I.4
Cremer, T.5
Leonhardt, H.6
Cardoso, M.C.7
-
44
-
-
10144230694
-
The architecture of chicken chromosome territories changes during differentiation
-
DOI 10.1186/1471-2121-5-44
-
S Stadler V Schnapp R Mayer, et al. 2004 The architecture of chicken chromosome territories changes during differentiation BMC Cell Biol. 5 44 10.1186/1471-2121-5-44 15555075 (Pubitemid 39615365)
-
(2004)
BMC Cell Biology
, vol.5
, pp. 44
-
-
Stadler, S.1
Schnapp, V.2
Mayer, R.3
Stein, S.4
Cremer, C.5
Bonifer, C.6
Cremer, T.7
Dietzel, S.8
-
45
-
-
69249227488
-
Chromosomal rearrangements during human epidermal keratinocyte differentiation
-
10.1002/jcp.21855 19626667
-
NV Marella B Seifert P Nagarajan S Sinha R Berezney 2009 Chromosomal rearrangements during human epidermal keratinocyte differentiation J Cell Physiol. 221 139 146 10.1002/jcp.21855 19626667
-
(2009)
J Cell Physiol.
, vol.221
, pp. 139-146
-
-
Marella, N.V.1
Seifert, B.2
Nagarajan, P.3
Sinha, S.4
Berezney, R.5
-
46
-
-
33746076412
-
A novel role for Xist RNA in the formation of a repressive nuclear compartment into which genes are recruited when silenced
-
DOI 10.1101/gad.380906
-
J Chaumeil P Le Baccon A Wutz E Heard 2006 A novel role for Xist RNA in the formation of a repressive nuclear compartment into which genes are recruited when silenced Genes Dev. 20 2223 2237 10.1101/gad.380906 16912274 (Pubitemid 44244524)
-
(2006)
Genes and Development
, vol.20
, Issue.16
, pp. 2223-2237
-
-
Chaumeil, J.1
Le Baccon, P.2
Wutz, A.3
Heard, E.4
-
47
-
-
0032618540
-
Mammary epithelial stem cells: Our current understanding
-
10.1023/A:1018752519356 10219905
-
G Chepko GH Smith 1999 Mammary epithelial stem cells: our current understanding J Mammary Gland Biol Neoplasia. 4 35 52 10.1023/A:1018752519356 10219905
-
(1999)
J Mammary Gland Biol Neoplasia.
, vol.4
, pp. 35-52
-
-
Chepko, G.1
Smith, G.H.2
-
48
-
-
68349095163
-
Contributions of extracellular matrix signaling and tissue architecture to nuclear mechanisms and spatial organization of gene expression control
-
19328836
-
SA Lelievre 2009 Contributions of extracellular matrix signaling and tissue architecture to nuclear mechanisms and spatial organization of gene expression control Biochim Biophys Acta. 1790 925 935 19328836
-
(2009)
Biochim Biophys Acta.
, vol.1790
, pp. 925-935
-
-
Lelievre, S.A.1
-
49
-
-
2642542643
-
A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin
-
DOI 10.1101/gad.300704
-
G Schotta M Lachner K Sarma, et al. 2004 A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin Genes Dev. 18 1251 1262 10.1101/gad.300704 15145825 (Pubitemid 38720593)
-
(2004)
Genes and Development
, vol.18
, Issue.11
, pp. 1251-1262
-
-
Schotta, G.1
Lachner, M.2
Sarma, K.3
Ebert, A.4
Sengupta, R.5
Reuter, G.6
Reinberg, D.7
Jenuwein, T.8
-
50
-
-
5444263735
-
Epigenetic aspects of differentiation
-
DOI 10.1242/jcs.01390
-
KL Arney AG Fisher 2004 Epigenetic aspects of differentiation J Cell Sci 117 4355 4363 10.1242/jcs.01390 15331660 (Pubitemid 39360063)
-
(2004)
Journal of Cell Science
, vol.117
, Issue.19
, pp. 4355-4363
-
-
Arney, K.L.1
Fisher, A.G.2
-
51
-
-
15444372817
-
The profile of repeat-associated histone lysine methylation states in the mouse epigenome
-
DOI 10.1038/sj.emboj.7600545
-
JH Martens RJ O'Sullivan U Braunschweig, et al. 2005 The profile of repeat-associated histone lysine methylation states in the mouse epigenome Embo J. 24 800 812 10.1038/sj.emboj.7600545 15678104 (Pubitemid 40396109)
-
(2005)
EMBO Journal
, vol.24
, Issue.4
, pp. 800-812
-
-
Martens, J.H.A.1
O'Sullivan, R.J.2
Braunschweig, U.3
Opravil, S.4
Radolf, M.5
Steinlein, P.6
Jenuwein, T.7
-
52
-
-
9944228800
-
Distinct dynamics and distribution of histone methyl-lysine derivatives in mouse development
-
DOI 10.1016/j.ydbio.2004.08.038, PII S0012160604005949
-
VL Biron KJ McManus N Hu MJ Hendzel DA Underhill 2004 Distinct dynamics and distribution of histone methyl-lysine derivatives in mouse development Dev Biol. 276 337 351 10.1016/j.ydbio.2004.08.038 15581869 (Pubitemid 39592398)
-
(2004)
Developmental Biology
, vol.276
, Issue.2
, pp. 337-351
-
-
Biron, V.L.1
McManus, K.J.2
Hu, N.3
Hendzel, M.J.4
Underhill, D.A.5
-
53
-
-
9144268924
-
Partitioning and plasticity of repressive histone methylation states in mammalian chromatin
-
DOI 10.1016/S1097-2765(03)00477-5
-
AH Peters S Kubicek K Mechtler, et al. 2003 Partitioning and plasticity of repressive histone methylation states in mammalian chromatin Mol Cell. 12 1577 1589 10.1016/S1097-2765(03)00477-5 14690609 (Pubitemid 38037024)
-
(2003)
Molecular Cell
, vol.12
, Issue.6
, pp. 1577-1589
-
-
Peters, A.H.F.M.1
Kubicek, S.2
Mechtler, K.3
O'Sullivan, R.J.4
Derijck, A.A.H.A.5
Perez-Burgos, L.6
Kohlmaier, A.7
Opravil, S.8
Tachibana, M.9
Shinkai, Y.10
Martens, J.H.A.11
Jenuwein, T.12
-
54
-
-
30044435641
-
Histone lysine methylation patterns in human cell types are arranged in distinct three-dimensional nuclear zones
-
DOI 10.1007/s00418-005-0049-1
-
R Zinner H Albiez J Walter AH Peters T Cremer M Cremer 2006 Histone lysine methylation patterns in human cell types are arranged in distinct three-dimensional nuclear zones Histochem Cell Biol. 125 3 19 10.1007/s00418-005-0049-1 16215742 (Pubitemid 43049968)
-
(2006)
Histochemistry and Cell Biology
, vol.125
, Issue.1-2
, pp. 3-19
-
-
Zinner, R.1
Albiez, H.2
Walter, J.3
Peters, A.H.F.M.4
Cremer, T.5
Cremer, M.6
-
55
-
-
12944308793
-
Extensive and orderly reprogramming of genome-wide chromatin modifications associated with specification and early development of germ cells in mice
-
DOI 10.1016/j.ydbio.2004.11.025, PII S0012160604008206
-
Y Seki K Hayashi K Itoh M Mizugaki M Saitou Y Matsui 2005 Extensive and orderly reprogramming of genome-wide chromatin modifications associated with specification and early development of germ cells in mice Dev Biol. 278 440 458 10.1016/j.ydbio.2004.11.025 15680362 (Pubitemid 40175041)
-
(2005)
Developmental Biology
, vol.278
, Issue.2
, pp. 440-458
-
-
Seki, Y.1
Hayashi, K.2
Itoh, K.3
Mizugaki, M.4
Saitou, M.5
Matsui, Y.6
-
56
-
-
22244460464
-
Histone methylation at gene promoters is associated with developmental regulation and region-specific expression of ionotropic and metabotropic glutamate receptors in human brain
-
DOI 10.1111/j.1471-4159.2005.03190.x
-
F Stadler G Kolb L Rubusch SP Baker EG Jones S Akbarian 2005 Histone methylation at gene promoters is associated with developmental regulation and region-specific expression of ionotropic and metabotropic glutamate receptors in human brain J Neurochem. 94 324 336 10.1111/j.1471-4159.2005.03190.x 15998284 (Pubitemid 40995249)
-
(2005)
Journal of Neurochemistry
, vol.94
, Issue.2
, pp. 324-336
-
-
Stadler, F.1
Kolb, G.2
Rubusch, L.3
Baker, S.P.4
Jones, E.G.5
Akbarian, S.6
-
57
-
-
26844560213
-
The reorganisation of constitutive heterochromatin in differentiating muscle requires HDAC activity
-
DOI 10.1016/j.yexcr.2005.07.031, PII S001448270500354X
-
R Terranova S Sauer M Merkenschlager AG Fisher 2005 The reorganisation of constitutive heterochromatin in differentiating muscle requires HDAC activity Exp Cell Res. 310 344 356 10.1016/j.yexcr.2005.07.031 16182285 (Pubitemid 41457339)
-
(2005)
Experimental Cell Research
, vol.310
, Issue.2
, pp. 344-356
-
-
Terranova, R.1
Sauer, S.2
Merkenschlager, M.3
Fisher, A.G.4
-
58
-
-
33646192456
-
Histone lysine trimethylation exhibits a distinct perinuclear distribution in Plzf-expressing spermatogonia
-
10.1016/j.ydbio.2006.02.013 16549060
-
C Payne RE Braun 2006 Histone lysine trimethylation exhibits a distinct perinuclear distribution in Plzf-expressing spermatogonia Dev Biol. 293 461 472 10.1016/j.ydbio.2006.02.013 16549060
-
(2006)
Dev Biol.
, vol.293
, pp. 461-472
-
-
Payne, C.1
Braun, R.E.2
-
59
-
-
66149186985
-
Genomic location analysis by ChIP-Seq
-
10.1002/jcb.22077 19173299
-
A Barski K Zhao 2009 Genomic location analysis by ChIP-Seq J Cell Biochem. 107 11 18 10.1002/jcb.22077 19173299
-
(2009)
J Cell Biochem.
, vol.107
, pp. 11-18
-
-
Barski, A.1
Zhao, K.2
-
60
-
-
65349086836
-
Characterization of human epigenomes
-
10.1016/j.gde.2009.02.001 19299119
-
Z Wang DE Schones K Zhao 2009 Characterization of human epigenomes Curr Opin Genet Dev. 19 127 134 10.1016/j.gde.2009.02.001 19299119
-
(2009)
Curr Opin Genet Dev.
, vol.19
, pp. 127-134
-
-
Wang, Z.1
Schones, D.E.2
Zhao, K.3
-
61
-
-
64849110610
-
Determination of enriched histone modifications in non-genic portions of the human genome
-
10.1186/1471-2164-10-143 19335899
-
JA Rosenfeld Z Wang DE Schones K Zhao R DeSalle MQ Zhang 2009 Determination of enriched histone modifications in non-genic portions of the human genome BMC Genomics. 10 143 10.1186/1471-2164-10-143 19335899
-
(2009)
BMC Genomics.
, vol.10
, pp. 143
-
-
Rosenfeld, J.A.1
Wang, Z.2
Schones, D.E.3
Zhao, K.4
Desalle, R.5
Zhang, M.Q.6
-
63
-
-
0242439142
-
Nuclear localization and histone acetylation: A pathway for chromatin opening and transcriptional activation of the human beta-globin locus
-
10783166
-
D Schubeler C Francastel DM Cimbora A Reik DI Martin M Groudine 2000 Nuclear localization and histone acetylation: a pathway for chromatin opening and transcriptional activation of the human beta-globin locus Genes Dev. 14 940 950 10783166
-
(2000)
Genes Dev.
, vol.14
, pp. 940-950
-
-
Schubeler, D.1
Francastel, C.2
Cimbora, D.M.3
Reik, A.4
Martin, D.I.5
Groudine, M.6
-
64
-
-
33644701666
-
Histone H4-lysine 20 monomethylation is increased in promoter and coding regions of active genes and correlates with hyperacetylation
-
DOI 10.1074/jbc.M505563200
-
H Talasz HH Lindner B Sarg W Helliger 2005 Histone H4-lysine 20 monomethylation is increased in promoter and coding regions of active genes and correlates with hyperacetylation J Biol Chem. 280 38814 38822 10.1074/jbc.M505563200 16166085 (Pubitemid 43853784)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.46
, pp. 38814-38822
-
-
Talasz, H.1
Lindner, H.H.2
Sarg, B.3
Helliger, W.4
-
65
-
-
4143098703
-
Functional development of the mammary gland: Use of expression rofiling and trajectory clustering to reveal changes in gene expression during pregnancy, lactation, and involution
-
DOI 10.1023/B:JOMG.0000010030.73983.57, Microarrays
-
MC Rudolph JL McManaman L Hunter T Phang MC Neville 2003 Functional development of the mammary gland: use of expression profiling and trajectory clustering to reveal changes in gene expression during pregnancy, lactation, and involution J Mammary Gland Biol Neoplasia. 8 287 307 10.1023/B:JOMG.0000010030. 73983.57 14973374 (Pubitemid 39137512)
-
(2003)
Journal of Mammary Gland Biology and Neoplasia
, vol.8
, Issue.3
, pp. 287-307
-
-
Rudolph, M.C.1
McManaman, J.L.2
Hunter, L.3
Phang, T.4
Neville, M.C.5
-
66
-
-
0036574913
-
Unravelling heterochromatin: Competition between positive and negative factors regulates accessibility
-
DOI 10.1016/S0168-9525(02)02648-3, PII S0168952502026483
-
N Dillon R Festenstein 2002 Unravelling heterochromatin: competition between positive and negative factors regulates accessibility Trends Genet. 18 252 258 10.1016/S0168-9525(02)02648-3 12047950 (Pubitemid 34607140)
-
(2002)
Trends in Genetics
, vol.18
, Issue.5
, pp. 252-258
-
-
Dillon, N.1
Festenstein, R.2
-
67
-
-
0033119507
-
Tissue structure, nuclear organization, and gene expression in normal and malignant breast
-
10197593 discussion 1763s-1764s
-
MJ Bissell VM Weaver SA Lelievre F Wang OW Petersen KL Schmeichel 1999 Tissue structure, nuclear organization, and gene expression in normal and malignant breast Cancer Res. 59 1757 1763s 10197593 discussion 1763s-1764s
-
(1999)
Cancer Res.
, vol.59
-
-
Bissell, M.J.1
Weaver, V.M.2
Lelievre, S.A.3
Wang, F.4
Petersen, O.W.5
Schmeichel, K.L.6
-
68
-
-
3042781543
-
DNA methylation control of tissue polarity and cellular differentiation in the mammary epithelium
-
DOI 10.1016/j.yexcr.2004.04.024, PII S0014482704002393
-
C Plachot SA Lelievre 2004 DNA methylation control of tissue polarity and cellular differentiation in the mammary epithelium Exp Cell Res. 298 122 132 10.1016/j.yexcr.2004.04.024 15242767 (Pubitemid 38887312)
-
(2004)
Experimental Cell Research
, vol.298
, Issue.1
, pp. 122-132
-
-
Plachot, C.1
Lelievre, S.A.2
-
69
-
-
34547214508
-
Cell shape regulates global histone acetylation in human mammary epithelial cells
-
DOI 10.1016/j.yexcr.2007.04.022, PII S0014482707001991
-
J Le Beyec R Xu SY Lee, et al. 2007 Cell shape regulates global histone acetylation in human mammary epithelial cells Exp Cell Res. 313 3066 3075 10.1016/j.yexcr.2007.04.022 17524393 (Pubitemid 47125878)
-
(2007)
Experimental Cell Research
, vol.313
, Issue.14
, pp. 3066-3075
-
-
Le Beyec, J.1
Xu, R.2
Lee, S.-Y.3
Nelson, C.M.4
Rizki, A.5
Alcaraz, J.6
Bissell, M.J.7
-
70
-
-
17244382615
-
Higher-order nuclear organization in growth arrest of human mammary epithelial cells: A novel role for telomere-associated protein TIN2
-
DOI 10.1242/jcs.01709
-
P Kaminker C Plachot SH Kim, et al. 2005 Higher-order nuclear organization in growth arrest of human mammary epithelial cells: a novel role for telomere-associated protein TIN2 J Cell Sci. 118 1321 1330 10.1242/jcs.01709 15741234 (Pubitemid 40528701)
-
(2005)
Journal of Cell Science
, vol.118
, Issue.6
, pp. 1321-1330
-
-
Kaminker, P.1
Plachot, C.2
Kim, S.-H.3
Chung, P.4
Crippen, D.5
Petersen, O.W.6
Bissell, M.J.7
Campisi, J.8
Lelievre, S.A.9
-
71
-
-
34249715394
-
The control of tissue architecture over nuclear organization is crucial for epithelial cell fate
-
DOI 10.1242/jcs.03439
-
G Chandramouly PC Abad DW Knowles SA Lelievre 2007 The control of tissue architecture over nuclear organization is crucial for epithelial cell fate J Cell Sci. 120 1596 1606 10.1242/jcs.03439 17405811 (Pubitemid 46831789)
-
(2007)
Journal of Cell Science
, vol.120
, Issue.9
, pp. 1596-1606
-
-
Chandramouly, G.1
Abad, P.C.2
Knowles, D.W.3
Lelievre, S.A.4
-
72
-
-
0024755652
-
A novel regulatory mechanism for whey acidic protein gene expression
-
2519617
-
LH Chen MJ Bissell 1989 A novel regulatory mechanism for whey acidic protein gene expression Cell Regul. 1 45 54 2519617
-
(1989)
Cell Regul.
, vol.1
, pp. 45-54
-
-
Chen, L.H.1
Bissell, M.J.2
-
73
-
-
26444528063
-
Regulation by the extracellular matrix (ECM) of prolactin-induced αs1-casein gene expression in rabbit primary mammary cells: Role of STAT5, C/EBP, and chromatin structure
-
DOI 10.1002/jcb.20397
-
G Jolivet T Pantano LM Houdebine 2005 Regulation by the extracellular matrix (ECM) of prolactin-induced alpha s1-casein gene expression in rabbit primary mammary cells: role of STAT5, C/EBP, and chromatin structure J Cell Biochem. 95 313 327 10.1002/jcb.20397 15778982 (Pubitemid 41420201)
-
(2005)
Journal of Cellular Biochemistry
, vol.95
, Issue.2
, pp. 313-327
-
-
Jolivet, G.1
Pantano, T.2
Houdebine, L.M.3
-
74
-
-
34447527890
-
Extracellular matrix-regulated gene expression requires cooperation of SWI/SNF and transcription factors
-
DOI 10.1074/jbc.M610316200
-
R Xu VA Spencer MJ Bissell 2007 Extracellular matrix-regulated gene expression requires cooperation of SWI/SNF and transcription factors J Biol Chem. 282 14992 14999 10.1074/jbc.M610316200 17387179 (Pubitemid 47093328)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.20
, pp. 14992-14999
-
-
Xu, R.1
Spencer, V.A.2
Bissell, M.J.3
-
75
-
-
69249142860
-
Lactogenic hormonal induction of long distance interactions between beta-casein gene regulatory elements
-
10.1074/jbc.M109.032490 19542223
-
EB Kabotyanski M Rijnkels C Freeman-Zadrowski AC Buser DP Edwards JM Rosen 2009 Lactogenic hormonal induction of long distance interactions between beta-casein gene regulatory elements J Biol Chem. 284 22815 22824 10.1074/jbc.M109.032490 19542223
-
(2009)
J Biol Chem.
, vol.284
, pp. 22815-22824
-
-
Kabotyanski, E.B.1
Rijnkels, M.2
Freeman-Zadrowski, C.3
Buser, A.C.4
Edwards, D.P.5
Rosen, J.M.6
-
76
-
-
53449085707
-
Visualizing chromatin dynamics in intact cells
-
10.1016/j.bbamcr.2008.06.022 18675855
-
TC Voss GL Hager 2008 Visualizing chromatin dynamics in intact cells Biochim Biophys Acta. 1783 2044 2051 10.1016/j.bbamcr.2008.06.022 18675855
-
(2008)
Biochim Biophys Acta.
, vol.1783
, pp. 2044-2051
-
-
Voss, T.C.1
Hager, G.L.2
-
77
-
-
0036006293
-
Chromatin motion is constrained by association with nuclear compartments in human cells
-
DOI 10.1016/S0960-9822(02)00695-4, PII S0960982202006954
-
JR Chubb S Boyle P Perry WA Bickmore 2002 Chromatin motion is constrained by association with nuclear compartments in human cells Curr Biol. 12 439 445 10.1016/S0960-9822(02)00695-4 11909528 (Pubitemid 34248889)
-
(2002)
Current Biology
, vol.12
, Issue.6
, pp. 439-445
-
-
Chubb, J.R.1
Boyle, S.2
Perry, P.3
Bickmore, W.A.4
-
78
-
-
58149342084
-
Probing the dynamic organization of transcription compartments and gene loci within the nucleus of living cells
-
10.1529/biophysj.108.135921 18805931
-
DK Sinha B Banerjee S Maharana GV Shivashankar 2008 Probing the dynamic organization of transcription compartments and gene loci within the nucleus of living cells Biophys J. 95 5432 5438 10.1529/biophysj.108.135921 18805931
-
(2008)
Biophys J.
, vol.95
, pp. 5432-5438
-
-
Sinha, D.K.1
Banerjee, B.2
Maharana, S.3
Shivashankar, G.V.4
-
79
-
-
0033083793
-
Dynamic repositioning of genes in the nucleus of lymphocytes preparing for cell division
-
DOI 10.1016/S1097-2765(00)80311-1
-
KE Brown J Baxter D Graf M Merkenschlager AG Fisher 1999 Dynamic repositioning of genes in the nucleus of lymphocytes preparing for cell division Mol Cell. 3 207 217 10.1016/S1097-2765(00)80311-1 10078203 (Pubitemid 29292621)
-
(1999)
Molecular Cell
, vol.3
, Issue.2
, pp. 207-217
-
-
Brown, K.E.1
Baxter, J.2
Graf, D.3
Merkenschlager, M.4
Fisher, A.G.5
-
80
-
-
4844223232
-
Tissue-specific spatial organization of genomes
-
10.1186/gb-2004-5-7-r44 15239829
-
LA Parada PG McQueen T Misteli 2004 Tissue-specific spatial organization of genomes Genome Biol. 5 R44 10.1186/gb-2004-5-7-r44 15239829
-
(2004)
Genome Biol.
, vol.5
, pp. 44
-
-
Parada, L.A.1
McQueen, P.G.2
Misteli, T.3
-
81
-
-
0038371177
-
Chromosome position: Now, where was I?
-
DOI 10.1016/S0960-9822(03)00276-8
-
WA Bickmore JR Chubb 2003 Dispatch. Chromosome position: now, where was I? Curr Biol. 13 R357 359 10.1016/S0960-9822(03)00276-8 12725752 (Pubitemid 36531012)
-
(2003)
Current Biology
, vol.13
, Issue.9
-
-
Bickmore, W.A.1
Chubb, J.R.2
-
82
-
-
60949096069
-
Epigenetic inheritance during the cell cycle
-
10.1038/nrm2640 19234478
-
AV Probst E Dunleavy G Almouzni 2009 Epigenetic inheritance during the cell cycle Nat Rev Mol Cell Biol. 10 192 206 10.1038/nrm2640 19234478
-
(2009)
Nat Rev Mol Cell Biol.
, vol.10
, pp. 192-206
-
-
Probst, A.V.1
Dunleavy, E.2
Almouzni, G.3
-
83
-
-
31644436473
-
Neural induction promotes large-scale chromatin reorganisation of the Mash1 locus
-
DOI 10.1242/jcs.02727
-
RR Williams V Azuara P Perry, et al. 2006 Neural induction promotes large-scale chromatin reorganisation of the Mash1 locus J Cell Sci. 119 132 140 10.1242/jcs.02727 16371653 (Pubitemid 43169306)
-
(2006)
Journal of Cell Science
, vol.119
, Issue.1
, pp. 132-140
-
-
Williams, R.R.E.1
Azuara, V.2
Perry, P.3
Sauer, S.4
Dvorkina, M.5
Jorgensen, H.6
Roix, J.7
McQueen, P.8
Misteli, T.9
Merkenschlager, M.10
Fisher, A.G.11
-
84
-
-
38849171662
-
Gene regulatory networks in lactation: Identification of global principles using bioinformatics
-
DOI 10.1186/1752-0509-1-56
-
DG Lemay MC Neville MC Rudolph KS Pollard JB German 2007 Gene regulatory networks in lactation: identification of global principles using bioinformatics BMC Syst Biol. 1 56 10.1186/1752-0509-1-56 18039394 (Pubitemid 351193987)
-
(2007)
BMC Systems Biology
, vol.1
, pp. 56
-
-
Lemay, D.G.1
Neville, M.C.2
Rudolph, M.C.3
Pollard, K.S.4
German, J.B.5
|