Bacillus trypoxylicola sp. nov., xylanase-producing alkaliphilic bacteria isolated from the guts of Japanese horned beetle larvae (trypoxylus dichotomus septentrionalis)

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 1, 2010, Pages 61-66

  Aizawa, Tomoko ^a   Urai, Makoto ^a,b   Iwabuchi, Noriyuki ^a   Nakajima, Matsuyasu ^a   Sunairi, Michio ^a  

^a NIHON UNIVERSITY   (Japan)

^b INST OF PHYS AND CHEMICAL RESEARCH   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AMOXICILLIN; AMOXICILLIN PLUS CLAVULANIC ACID; APRAMYCIN; BACTERIAL DNA; BACTERIAL RNA; CEFALOTIN; CEFOPERAZONE; CHLORAMPHENICOL; COLISTIN; DOXYCYCLINE; ERYTHROMYCIN; FLUMEQUINE; GENTAMICIN; KANAMYCIN; LINCOMYCIN; METRONIDAZOLE; NITROFURANTOIN; OXACILLIN; OXOLINIC ACID; PENICILLIN G; PRISTINAMYCIN; RIFAMPICIN; RNA 16S; SPECTINOMYCIN; STREPTOMYCIN; SULFAMETHIZOLE; TETRACYCLINE; TYLOSIN; UNINDEXED DRUG; XYLAN ENDO 1,3 BETA XYLOSIDASE;

ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACILLUS; BACILLUS ALCALOPHILUS; BACILLUS PSEUDALCALIPHILUS; BACILLUS TRYPOXYLICOLA; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; BEETLE; CONTROLLED STUDY; DNA CONTENT; ENZYME SYNTHESIS; GRAM POSITIVE BACTERIUM; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENETIC TREE; PRIORITY JOURNAL; RNA SEQUENCE; SPECIES DIFFERENTIATION;

ALKALIES; ANIMALS; BACILLUS; BACTERIAL PROTEINS; BASE COMPOSITION; BEETLES; DNA, BACTERIAL; DNA, RIBOSOMAL; ENDO-1,4-BETA XYLANASES; FATTY ACIDS; INTESTINES; LARVA; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S;

BACILLUS ALCALOPHILUS; BACILLUS PSEUDALCALIPHILUS; COLEOPTERA; POSIBACTERIA; TRYPOXYLUS DICHOTOMUS SEPTENTRIONALIS;

EID: 76849097433     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.005843-0     Document Type: Article

References (48)

1. Aino, K., Hirota, K., Matsuno, T., Morita, N., Nodasaka, Y., Fujiwara, T., Matsuyama, H., Yoshimune, K. & Yumoto, I. (2008). Bacillus polygoni sp. nov., a moderately halophilic, non-motile obligate alkaliphile isolated from indigo balls. Int J Syst Evol Microbiol 58, 120-124.
2. Borchert, M. S., Nielsen, P., Graeber, I., Kaesler, I., Szewzyk, U., Pape, T., Antranikian, G. & Schäfer, T. (2007).Bacillus plakortidis sp. nov. and Bacillus murimartini sp. nov., novel alkalitolerant members of rRNA group 6. Int J Syst Evol Microbiol 57, 2888-2893.
3. Borsodi, A. K., Márialigeti, K., Szabó, G., Palatinszky, M., Pollák, B., Kéki, Z., Kovács, A. L., Schumann, P. & Tóth, E. M. (2008). Bacillus aurantiacus sp. nov., an alkaliphilic and moderately halophilic bacterium isolated from Hungarian soda lakes. Int J Syst Evol Microbiol 58, 845-851.
4. Ezaki, T., Hashimoto, Y., Takeuchi, N., Yamamoto, H., Liu, S. L., Miura, H., Matsui, K. & Yabuuchi, E. (1988). Simple genetic method to identify viridans group streptococci by colorimetric dot hybridization and fluorometric hybridization in microdilution wells. J Clin Microbiol 26, 1708-1713.
5. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
6. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
7. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
8. Felsenstein, J. (2005). PHYLIP (phylogeny inference package) version 3.65. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
9. Ghosh, A., Bhardwaj, M., Satyanarayana, T., Khurana, M., Mayilraj, S. & Jain, R. K. (2007). Bacillus lehensis sp. nov., an alkalitolerant bacterium isolated from soil. Int J Syst Evol Microbiol 57, 238-242.
10. Gordon, R. E., Haynes, W. C. & Pang, C. H.-N. (1973). The Genus Bacillus. US Department of Agriculture Handbook no. 427. Washington, DC: Agricultural Research Service.
11. Horikoshi, K. (1991). Isolation and classification of alkalophilic microorganisms. In Microorganisms in Alkaline Environments, pp. 15-24. Edited by K. Horikoshi. Tokyo: Kodansha.
12. Horikoshi, K. (1996). Alkaliphiles - from an industrial point of view. FEMS Microbiol Rev 18, 259-270.
13. Hugh, R. & Leifson, E. (1953). The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various Gram-negative bacteria. J Bacteriol 66, 24-26.
14. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
15. 3. J Bacteriol 169, 5761-5765.
16. Kluge, A. G. & Farris, J. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
17. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
18. Kono, H. (1931). Die Trypoxylus-Arten aus Japan und Formosa (Col. Scarabaeidae). Insecta Matsumurana 5, 159-160 (in German).
19. Kurosawa, Y. (1985). Siiphidae. In The Coleoptera of Japan in Color, vol. 2. Edited by S. Ueno, Y. Kurosawa & M. Sato. Osaka: Hoikusha.
20. Lee, J.-C., Lee, G. S., Park, D.-J. & Kim, C.-J. (2008). Bacillus alkalitelluris sp. nov., an alkaliphilic bacterium isolated from sandy soil. Int J Syst Evol Microbiol 58, 2629-2634.
21. Li, Z., Kawamura, Y., Shida, O., Yamagata, S., Deguchi, T. & Ezaki, T. (2002). Bacillus okuhidensis sp. nov., isolated from the Okuhida spa area of Japan. Int J Syst Evol Microbiol 52, 1205-1209.
22. Nielsen, P., Fritze, D. & Priest, F. G. (1995). Phenetic diversity of alkaliphilic Bacillus strains: proposal for nine new species. Microbiology 141, 1745-1761.
23. Nogi, Y., Takami, H. & Horikoshi, K. (2005). Characterization of alkaliphilic Bacillus strains used in industry: proposal of five novel species. Int J Syst Evol Microbiol 55, 2309-2315.
24. Nowlan, B., Dodia, M. S., Singh, S. P. & Patel, B. K. C. (2006). Bacillus okhensis sp. nov., a halotolerant and alkalitolerant bacterium from an Indian saltpan. Int J Syst Evol Microbiol 56, 1073-1077.
25. Ohkuma, M., Shimizu, H., Thongaram, T., Kosono, S., Moriya, K., Trakulnaleamsai, S., Noparatnaraporn, N. & Kudo, T. (2003). An alkaliphilic and xylanolytic Paenibacillus species isolated from the gut of a soil-feeding termite. Microbes Environ 18, 145-151.
26. Olivera, N., Siñeriz, F. & Breccia, J. D. (2005). Bacillus patagoniensis sp. nov., a novel alkalitolerant bacterium from the rhizosphere of Atriplex lampa in Patagonia, Argentina. Int J Syst Evol Microbiol 55, 443-447.
27. Ryu, E. (1938). On the Gram-differentiation of bacteria by the simplest method. J Jpn Soc Vet Sci 17, 31.
28. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
29. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
30. Sorokin, D. Y., van Pelt, S. & Tourova, T. P. (2008a). Utilization of aliphatic nitriles under haloalkaline conditions by Bacillus alkalinitrilicus sp. nov. isolated from soda solonchak soil. FEMS Microbiol Lett 288, 235-240.
31. Sorokin, I. D., Kravchenko, I. K., Tourova, T. P., Kolganova, T. V., Boulygina, E. S. & Sorokin, D. Y. (2008b). Bacillus alkalidiazotrophicus sp. nov., a diazotrophic, low salt-tolerant alkaliphile isolated from Mongolian soda soil. Int J Syst Evol Microbiol 58, 2459-2464.
32. Sorokin, D. Y., van Pelt, S. & Tourova, T. P. (2009). Bacillus alkalinitrilicus sp. nov. In List of New Names and New Combinations Previously Effectively, but not Validly, Published, Validation List no. 125. Int J Syst Evol Microbiol 59, 1-2.
33. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
34. Takeishi, H., Anzai, H., Urai, M., Aizawa, T., Wada, N., Iwabuchi, N., Sunairi, M. & Nakajima, M. (2006). Xylanolytic and alkaliphilic Dietzia sp. isolated from larvae of the Japanese horned beetle, Trypoxylus dichotomus. Actinomycetologica 20, 49-54.
35. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
36. Tamura, T. & Hatano, K. (2001). Phylogenetic analysis of the genus Actinoplanes and transfer of Actinoplanes minutisporangius Ruan et al. 1986 and 'Actinoplanes aurantiacus' to Cryptosporangium minutisporangium comb. nov. and Cryptosporangium aurantiacum sp. nov. Int J Syst Evol Microbiol 51, 2119-2125.
37. Tamura, T., Nakagaito, Y., Nishii, T., Hasegawa, T., Stackebrandt, E. & Yokota, A. (1994). A new genus of the order Actinomycetales, Couchioplanes gen. nov., with descriptions of Couchioplanes caeruleus (Horan and Brodsky 1986) comb. nov. and Couchioplanes caeruleus subsp. azureus subsp. nov. Int J Syst Bacteriol 44, 193-203.
38. Tamura, T., Hayakawa, M. & Hatano, K. (1999). Sporichthya brevicatena sp. nov. Int J Syst Bacteriol 49, 1779-1784.
39. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
40. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
41. Thongaram, T., Kosono, S., Ohkuma, M., Hongoh, Y., Kitada, M., Yoshinaka, T., Trakulnaleamsai, S., Noparatnaraporn, N. & Kudo, T. (2003). Gut of higher termites as a niche for alkaliphiles as shown by culture-based and culture-independent studies. Microbes Environ 18, 152-159.
42. Vargas, V. A., Delgado, O. D., Hatti-Kaul, R. & Mattiasson, B. (2005). Bacillus bogoriensis sp. nov., a novel alkaliphilic, halotolerant bacterium isolated from a Kenyan soda lake. Int J Syst Evol Microbiol 55, 899-902.
43. Wada, N., Takeishi, H., Urai, M., Iwabuchi, N., Sunairi, M., Nakajima, N. & Anzai, H. (2004). Microbial flora in digestive tract of Tripoxylus dichotoma (L.) larvae. In 10th International Symposium on Microbial Ecology, Cancun, Mexico, abstract 266.Heteren: International Society for Microbial Ecology.
44. Wang, Q. F., Li, W., Liu, Y. L., Cao, H. H., Li, Z. & Guo, G. Q. (2007). Bacillus qingdaonensis sp. nov., a moderately haloalkaliphilic bacterium isolated from a crude sea-salt sample collected near Qingdao in eastern China. Int J Syst Evol Microbiol 57, 1143-1147.
45. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
46. Yumoto, I., Yamazaki, K., Sawabe, T., Nakano, K., Kawasaki, K., Ezura, Y. & Shinano, H. (1998). Bacillus horti sp. nov., a new Gramnegative alkaliphilic bacillus. Int J Syst Bacteriol 48, 565-571.
47. Yumoto, I., Yamaga, S., Sogabe, Y., Nodasaka, Y., Matsuyama, H., Nakajima, K. & Suemori, A. (2003). Bacillus krulwichiae sp. nov., a halotolerant obligate alkaliphile that utilizes benzoate and mhydroxybenzoate. Int J Syst Evol Microbiol 53, 1531-1536.
48. Yumoto, I., Hirota, K., Goto, T., Nodasaka, Y. & Nakajima, K. (2005). Bacillus oshimensis sp. nov., a moderately halophilic, non-motile alkaliphile. Int J Syst Evol Microbiol 55, 907-911.