Bacillus aurantiacus sp. nov., an alkaliphilic and moderately halophilic bacterium isolated from Hungarian soda lakes

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 4, 2008, Pages 845-851

  Borsodi, Andrea K ^a   Márialigeti, Károly ^a   Szabó, Gitta ^a   Palatinszky, Márton ^a   Pollák, Beatrix ^a   Kéki, Zsuzsa ^a   Kovács, Attila L ^a   Schumann, Peter ^b   Tóth, Erika M ^a  

^a EÖTVÖS LORÁND UNIVERSITY   (Hungary)

^b LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CATALASE; DIAMINOPIMELIC ACID; FATTY ACID; MENAQUINONE; MENAQUINONE 7; OXIDOREDUCTASE; PEPTIDOGLYCAN; RNA 16S; SODIUM CHLORIDE; UNCLASSIFIED DRUG; BACTERIAL RNA; FRESH WATER; PRIMER DNA;

AEROBIC BACTERIUM; ARTICLE; BACILLUS; BACILLUS AURANTIACUS; BACTERIAL ENDOSPORE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CONTROLLED STUDY; DNA CONTENT; GRAM POSITIVE BACTERIUM; HALOPHILIC BACTERIUM; HUNGARY; LAKE; MICROBIAL MORPHOLOGY; MOLECULAR PHYLOGENY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; TYPE STRAIN; BACTERIAL GENE; CHEMISTRY; CLASSIFICATION; DNA BASE COMPOSITION; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NOMENCLATURE; PH; PHYLOGENY; SALINITY; SPECIES DIFFERENCE; TRANSMISSION ELECTRON MICROSCOPY;

BACILLUS (BACTERIUM); BACTERIA (MICROORGANISMS); POSIBACTERIA;

BACILLUS; BASE COMPOSITION; BASE SEQUENCE; DNA PRIMERS; DNA, BACTERIAL; FATTY ACIDS; FRESH WATER; GENES, BACTERIAL; HUNGARY; HYDROGEN-ION CONCENTRATION; MICROSCOPY, ELECTRON, TRANSMISSION; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SALINITY; SPECIES SPECIFICITY; TERMINOLOGY AS TOPIC;

EID: 47249124895     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65325-0     Document Type: Article

References (37)

1. Agnew, M. D., Koval, S. F. & Jarrell, K. F. (1995). Isolation and characterization of novel alkaliphiles from bauxite-processing waste and description of Bacillus vedderi sp. nov., a new obligate alkaliphile. Syst Appl Microbiol 18, 221-230.
2. Barrow, G. I. & Feltham, R. K. A. (2003). Cowan and Steel's Manual for the Identification of Medical Bacteria. Cambridge: Cambridge University Press.
3. Borsodi, A. K., Micsinai, A., Kovács, G., Tóth, E., Schumann, P., Kovács, A. L., Böddi, B. & Márialigeti, K. (2003). Pannonibacter phragmitetus gen. nov., sp. nov., a novel alkalitolerant bacterium isolated from decomposing reed rhizomes in a Hungarian soda lake. Int J Syst Evol Microbiol 53, 555-561.
4. Borsodi, A. K., Micsinai, A., Rusznyák, A., Vladár, P., Kovács, G., Tóth, E. M. & Márialigeti, K. (2005). Diversity of alkaliphilic and alkalitolerant bacteria cultivated from decomposing reed rhizomes in a Hungarian soda lake. Microb Ecol 50, 9-18.
5. Borsodi, A. K., Makk, J., Rusznyák, A., Vajna, B., Taba, Gy. & Márialigeti, K. (2007). Phenotypic characterization and molecular taxonomic studies on Bacillus and related isolates from Phragmites australis periphyton. Aquat Bot 86, 243-252.
6. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
7. Claus, D. (1992). A standardized Gram staining procedure. World J Microbiol Biotechnol 8, 451-452.
8. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
9. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
10. De Soete, G. (1983). A least squares algorithm for fitting additive trees to proximity data. Psychometrika 48, 621-626.
11. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
12. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
13. Groth, I., Schumann, P., Weiss, N., Martin, K. & Rainey, F. A. (1996). Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46, 234-239.
14. Groth, I., Schumann, P., Rainey, F. A., Martin, K., Schietze, B. & Augsten, K. (1997). Demetria terragena gen. nov. sp. nov., a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 47, 1129-1133.
15. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319-322.
16. Horikoshi, K. (1996). Alkaliphiles - from an industrial point of view. FEMS Microbiol Rev 18, 259-270.
17. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
18. Jones, B. E., Grant, W. D., Duckworth, A. W. & Owenson, G. G. (1998). Microbial diversity of soda lakes. Extremophiles 2, 191-200.
19. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
20. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
21. Lim, J.-M., Jeon, C. O., Lee, S.-M., Lee, J. C., Xu, L.-H., Jiang, C.-L. & Kim, C.-J. (2006a). Bacillus salarius sp. nov., a halophilic, spore-forming bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 56, 373-377.
22. Lim, J.-M., Jeon, C. O. & Kim, C.-J. (2006b). Bacillus taeanensis sp. nov., a halophilic Gram-positive bacterium from a solar saltern in Korea. Int J Syst Evol Microbiol 56, 2903-2908.
23. Maidak, B. L., Olsen, G. J., Larsen, N., Overbeek, R., McCaughey, M. J. & Woese, C. R. (1996). The Ribosomal Database Project (RDP). Nucleic Acids Res 24, 82-85.
24. Martins, R. F., Davids, W., Al-Soud, W. A., Levander, F., Radström, P. & Hatti-Kaul, R. (2001). Starch-hydrolyzing bacteria from Ethiopian soda lakes. Extremophiles 5, 135-144.
25. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
26. Minnikin, D. E., Collins, M. D. & Goodfellow, M. (1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47, 87-95.
27. Murray, R. G. E., Doetsch, R. N. & Robinow, C. F. (1994). Determinative and cytological light microscopy. In Methods for General and Molecular Bacteriology, pp. 21-41. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
28. Nielsen, P., Fritze, D. & Priest, F. G. (1995). Phenetic diversity of alkaliphilic Bacillus strains: proposal for nine new species. Microbiology 141, 1745-1761.
29. Nogi, Y., Takami, H. & Horikoshi, K. (2005). Characterization of alkaliphilic Bacillus strains used in industry: proposal of five novel species. Int J Syst Evol Microbiol 55, 2309-2315.
30. Rees, H. C., Grant, W. D., Jones, B. E. & Heaphy, S. (2004). Diversity of Kenyan soda lake alkaliphiles assessed by molecular methods. Extremophiles 8, 63-71.
31. Romano, I., Lama, L., Nicolaus, B., Gambacorta, A. & Giordano, A. (2005). Bacillus saliphilus sp. nov., isolated from a mineral pool in Campania, Italy. Int J Syst Evol Microbiol 55, 159-163.
32. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
33. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 603-711. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
34. Stead, D. E., Sellwood, J. E., Wilson, J. & Viney, I. (1992). Evaluation of a commercial microbial identification system based on fatty acid profiles for rapid, accurate identification of plant pathogenic bacteria. J Appl Bacteriol 72, 315-321.
35. Strunk, O. & Ludwig, W. (1995). ARB - a software environment for sequence data. Department of Microbiology, Technical University of Munich, Germany. http://www.arb-home.de/
36. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
37. Yamada, K. & Komagata, K. (1972). Taxonomic studies on coryneform bacteria. IV. Morphological, cultural, biochemical, and physiological characteristics. J Gen Appl Microbiol 18, 399-416.