-
1
-
-
0016829942
-
Terminal-sequence analysis of bacterial ribosomal RNA. Correlation between the 3′-terminal-polypyrimidine sequence of 16-S RNA and translational specificity of the ribosome
-
Shine J, Dalgarno L (1975) Terminal-sequence analysis of bacterial ribosomal RNA. Correlation between the 3′-terminal-polypyrimidine sequence of 16-S RNA and translational specificity of the ribosome. Eur J Biochem 57: 221-230.
-
(1975)
Eur J Biochem
, vol.57
, pp. 221-230
-
-
Shine, J.1
Dalgarno, L.2
-
2
-
-
0016610995
-
Determinant of cistron specificity in bacterial ribosomes
-
Shine J, Dalgarno L (1975) Determinant of cistron specificity in bacterial ribosomes. Nature 254: 34-38.
-
(1975)
Nature
, vol.254
, pp. 34-38
-
-
Shine, J.1
Dalgarno, L.2
-
3
-
-
0033061571
-
Initiation of translation in prokaryotes and eukaryotes
-
Kozak M (1999) Initiation of translation in prokaryotes and eukaryotes. Gene 234: 187-208.
-
(1999)
Gene
, vol.234
, pp. 187-208
-
-
Kozak, M.1
-
4
-
-
0026151096
-
Effects of long 5′ leader sequences on initiation by eukaryotic ribosomes in vitro
-
Kozak M (1991) Effects of long 5′ leader sequences on initiation by eukaryotic ribosomes in vitro. Gene Expr 1: 117-125.
-
(1991)
Gene Expr
, vol.1
, pp. 117-125
-
-
Kozak, M.1
-
5
-
-
0019852740
-
Possible role of flanking nucleotides in recognition of the AUG initiator codon by eukaryotic ribosomes
-
Kozak M (1981) Possible role of flanking nucleotides in recognition of the AUG initiator codon by eukaryotic ribosomes. Nucleic Acids Res 9: 5233-5252.
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 5233-5252
-
-
Kozak, M.1
-
6
-
-
0031010944
-
Recognition of AUG and alternative initiator codons is augmented by G in position +4 but is not generally affected by the nucleotides in positions +5 and +6
-
Kozak M (1997) Recognition of AUG and alternative initiator codons is augmented by G in position +4 but is not generally affected by the nucleotides in positions +5 and +6. Embo J 16: 2482-2492.
-
(1997)
Embo J
, vol.16
, pp. 2482-2492
-
-
Kozak, M.1
-
7
-
-
85110815800
-
Not every polymorphism close to the AUG codon can be explained by invoking context effects on initiation of translation
-
author reply 1203
-
Kozak M (2003) Not every polymorphism close to the AUG codon can be explained by invoking context effects on initiation of translation. Blood 101: 1202-1203; author reply 1203.
-
(2003)
Blood
, vol.101
, pp. 1202-1203
-
-
Kozak, M.1
-
8
-
-
0035957142
-
A progress report on translational control in eukaryotes
-
Kozak M (2001) A progress report on translational control in eukaryotes. Sci STKE 2001: PE1.
-
(2001)
Sci STKE 2001
-
-
Kozak, M.1
-
9
-
-
0023489250
-
Sequence and structural features associated with translational initiator regions in yeast-a review
-
Cigan AM, Donahue TF (1987) Sequence and structural features associated with translational initiator regions in yeast-a review. Gene 59: 1-18.
-
(1987)
Gene
, vol.59
, pp. 1-18
-
-
Cigan, A.M.1
Donahue, T.F.2
-
10
-
-
0028136218
-
The immediate downstream codon strongly influences the efficiency of utilization of eukaryotic translation initiation codons
-
Grunert S, Jackson RJ (1994) The immediate downstream codon strongly influences the efficiency of utilization of eukaryotic translation initiation codons. Embo J 13: 3618-3630.
-
(1994)
Embo J
, vol.13
, pp. 3618-3630
-
-
Grunert, S.1
Jackson, R.J.2
-
11
-
-
0025200973
-
The specificities of yeast methionine aminopeptidase and acetylation of amino-terminal methionine in vivo. Processing of altered iso-1-cytochromes c created by oligonucleotide transformation
-
Moerschell RP, Hosokawa Y, Tsunasawa S, Sherman F (1990) The specificities of yeast methionine aminopeptidase and acetylation of amino-terminal methionine in vivo. Processing of altered iso-1-cytochromes c created by oligonucleotide transformation. J Biol Chem 265: 19638-19643.
-
(1990)
J Biol Chem
, vol.265
, pp. 19638-19643
-
-
Moerschell, R.P.1
Hosokawa, Y.2
Tsunasawa, S.3
Sherman, F.4
-
12
-
-
11144225200
-
Analysis of translational initiation in coxsackievirus B3 suggests an alternative explanation for the high frequency of R+4 in the eukaryotic consensus motif
-
Harkins S, Cornell CT, Whitton JL (2005) Analysis of translational initiation in coxsackievirus B3 suggests an alternative explanation for the high frequency of R+4 in the eukaryotic consensus motif. J Virol 79: 987-996.
-
(2005)
J Virol
, vol.79
, pp. 987-996
-
-
Harkins, S.1
Cornell, C.T.2
Whitton, J.L.3
-
13
-
-
0035955697
-
The Biology and Enzymology of Protein N-Myristoylation
-
Farazi TA, Waksman G, Gordon JI (2001) The Biology and Enzymology of Protein N-Myristoylation. J Biol Chem 276: 39501-39504.
-
(2001)
J Biol Chem
, vol.276
, pp. 39501-39504
-
-
Farazi, T.A.1
Waksman, G.2
Gordon, J.I.3
-
14
-
-
33646264815
-
Posttranslational myristoylation of caspase-activated p21-activated protein kinase 2 (PAK2) potentiates late apoptotic events
-
Vilas GL, Corvi MM, Plummer GJ, Seime AM, Lambkin GR, et al. (2006) Posttranslational myristoylation of caspase-activated p21-activated protein kinase 2 (PAK2) potentiates late apoptotic events. Proc Natl Acad Sci U S A 103: 6542-6547.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 6542-6547
-
-
Vilas, G.L.1
Corvi, M.M.2
Plummer, G.J.3
Seime, A.M.4
Lambkin, G.R.5
-
15
-
-
33744933740
-
Posttranslational N-myristoylation is required for the anti-apoptotic activity of human tGelsolin, the C-terminal caspase cleavage product of human gelsolin
-
Sakurai N, Utsumi T (2006) Posttranslational N-myristoylation is required for the anti-apoptotic activity of human tGelsolin, the C-terminal caspase cleavage product of human gelsolin. J Biol Chem 281: 14288-14295.
-
(2006)
J Biol Chem
, vol.281
, pp. 14288-14295
-
-
Sakurai, N.1
Utsumi, T.2
-
16
-
-
33646567507
-
The myristoylation of TRIF-related adaptor molecule is essential for Toll-like receptor 4 signal transduction
-
Rowe DC, McGettrick AF, Latz E, Monks BG, Gay NJ, et al. (2006) The myristoylation of TRIF-related adaptor molecule is essential for Toll-like receptor 4 signal transduction. Proc Natl Acad Sci U S A 103: 6299-6304.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 6299-6304
-
-
Rowe, D.C.1
McGettrick, A.F.2
Latz, E.3
Monks, B.G.4
Gay, N.J.5
-
17
-
-
33644856238
-
Tomato Pto encodes a functional N-myristoylation motif that is required for signal transduction in Nicotiana benthamiana
-
de Vries JS, Andriotis VM, Wu AJ, Rathjen JP (2006) Tomato Pto encodes a functional N-myristoylation motif that is required for signal transduction in Nicotiana benthamiana. Plant J 45: 31-45.
-
(2006)
Plant J
, vol.45
, pp. 31-45
-
-
de Vries, J.S.1
Andriotis, V.M.2
Wu, A.J.3
Rathjen, J.P.4
-
18
-
-
31644450805
-
The pseudomonas syringae pv. tomato DC3000 Type III effector HopF2 has a putative myristoylation site required for its avirulence and virulence functions
-
Robert-Seilaniantz A, Shan L, Zhou JM, Tang X (2006) The pseudomonas syringae pv. tomato DC3000 Type III effector HopF2 has a putative myristoylation site required for its avirulence and virulence functions. Mol Plant Microbe Interact 19: 130-138.
-
(2006)
Mol Plant Microbe Interact
, vol.19
, pp. 130-138
-
-
Robert-Seilaniantz, A.1
Shan, L.2
Zhou, J.M.3
Tang, X.4
-
19
-
-
33644584737
-
Role of myristoylation and Nterminal basic residues in membrane association of the human immunodeficiency virus type 1 Nef protein
-
Bentham M, Mazaleyrat S, Harris M (2006) Role of myristoylation and Nterminal basic residues in membrane association of the human immunodeficiency virus type 1 Nef protein. J Gen Virol 87: 563-571.
-
(2006)
J Gen Virol
, vol.87
, pp. 563-571
-
-
Bentham, M.1
Mazaleyrat, S.2
Harris, M.3
-
20
-
-
33144469859
-
-
Breuer S, Gerlach H, Kolaric B, Urbanke C, Opitz N, et al. (2006) Biochemical indication for myristoylation-dependent conformational changes in HIV-1 Nef. Biochemistry 45: 2339-2349.
-
Breuer S, Gerlach H, Kolaric B, Urbanke C, Opitz N, et al. (2006) Biochemical indication for myristoylation-dependent conformational changes in HIV-1 Nef. Biochemistry 45: 2339-2349.
-
-
-
-
21
-
-
29344470758
-
The effect of HIV-1 Gag myristoylation on membrane binding
-
Provitera P, El-Maghrabi R, Scarlata S (2006) The effect of HIV-1 Gag myristoylation on membrane binding. Biophys Chem 119: 23-32.
-
(2006)
Biophys Chem
, vol.119
, pp. 23-32
-
-
Provitera, P.1
El-Maghrabi, R.2
Scarlata, S.3
-
22
-
-
0032694167
-
A sampling of the yeast proteome
-
Futcher B, Latter GI, Monardo P, McLaughlin CS, Garrels JI (1999) A sampling of the yeast proteome. Mol Cell Biol 19: 7357-7368.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 7357-7368
-
-
Futcher, B.1
Latter, G.I.2
Monardo, P.3
McLaughlin, C.S.4
Garrels, J.I.5
-
24
-
-
0035805255
-
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
-
Ideker T, Thorsson V, Ranish JA, Christmas R, Buhler J, et al. (2001) Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science 292: 929-934.
-
(2001)
Science
, vol.292
, pp. 929-934
-
-
Ideker, T.1
Thorsson, V.2
Ranish, J.A.3
Christmas, R.4
Buhler, J.5
-
25
-
-
0036545614
-
Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae
-
Griffin TJ, Gygi SP, Ideker T, Rist B, Eng J, et al. (2002) Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae. Mol Cell Proteomics 1: 323-333.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 323-333
-
-
Griffin, T.J.1
Gygi, S.P.2
Ideker, T.3
Rist, B.4
Eng, J.5
-
26
-
-
20144368638
-
Integrated Genomic and Proteomic Analyses of Gene Expression in Mammalian Cells
-
Tian Q, Stepaniants SB, Mao M, Weng L, Feetham MC, et al. (2004) Integrated Genomic and Proteomic Analyses of Gene Expression in Mammalian Cells. Mol Cell Proteomics 3: 960-969.
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 960-969
-
-
Tian, Q.1
Stepaniants, S.B.2
Mao, M.3
Weng, L.4
Feetham, M.C.5
-
27
-
-
26444545538
-
Reproducibility, bioinformatic analysis and power of the SAGE method to evaluate changes in transcriptome
-
Dinel S, Bolduc C, Belleau P, Boivin A, Yoshioka M, et al. (2005) Reproducibility, bioinformatic analysis and power of the SAGE method to evaluate changes in transcriptome. Nucleic Acids Res 33: e26.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Dinel, S.1
Bolduc, C.2
Belleau, P.3
Boivin, A.4
Yoshioka, M.5
-
28
-
-
0032706622
-
Analysis of human transcriptomes
-
Velculescu VE, Madden SL, Zhang L, Lash AE, Yu J, et al. (1999) Analysis of human transcriptomes. Nat Genet 23: 387-388.
-
(1999)
Nat Genet
, vol.23
, pp. 387-388
-
-
Velculescu, V.E.1
Madden, S.L.2
Zhang, L.3
Lash, A.E.4
Yu, J.5
-
29
-
-
0036549767
-
Discordant protein and mRNA expression in lung adenocarcinomas
-
Chen G, Gharib TG, Huang CC, Taylor JM, Misek DE, et al. (2002) Discordant protein and mRNA expression in lung adenocarcinomas. Mol Cell Proteomics 1: 304-313.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 304-313
-
-
Chen, G.1
Gharib, T.G.2
Huang, C.C.3
Taylor, J.M.4
Misek, D.E.5
-
30
-
-
55249126178
-
-
Zar JH. Biostatistical Aanalysis. Upper Saddle River, New Jersey: Prentice Hall
-
Zar JH. Biostatistical Aanalysis. Upper Saddle River, New Jersey: Prentice Hall.
-
-
-
-
31
-
-
0023650543
-
The codon Adaptation Index-a measure of directional synonymous codon usage bias, and its potential applications
-
Sharp PM, Li WH (1987) The codon Adaptation Index-a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res 15: 1281-1295.
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 1281-1295
-
-
Sharp, P.M.1
Li, W.H.2
-
32
-
-
0034666040
-
Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae
-
Coghlan A, Wolfe KH (2000) Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae. Yeast 16: 1131-1145.
-
(2000)
Yeast
, vol.16
, pp. 1131-1145
-
-
Coghlan, A.1
Wolfe, K.H.2
-
33
-
-
0034201441
-
EMBOSS: The European Molecular Biology Open Software Suite
-
Rice P, Longden I, Bleasby A (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16: 276-277.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
34
-
-
0034848170
-
DAMBE: Software package for data analysis in molecular biology and evolution
-
Xia X, Xie Z (2001) DAMBE: Software package for data analysis in molecular biology and evolution. Journal of Heredity 92: 371-373.
-
(2001)
Journal of Heredity
, vol.92
, pp. 371-373
-
-
Xia, X.1
Xie, Z.2
-
36
-
-
0036889468
-
Evolution of synonymous codon usage in metazoans
-
Duret L (2002) Evolution of synonymous codon usage in metazoans. Current Opinion in Genetics & Development 12: 640-649.
-
(2002)
Current Opinion in Genetics & Development
, vol.12
, pp. 640-649
-
-
Duret, L.1
-
37
-
-
33244484877
-
No evidence for tissue-specific adaptation of synonymous codon usage in humans
-
Semon M, Lobry JR, Duret L (2006) No evidence for tissue-specific adaptation of synonymous codon usage in humans. Mol Biol Evol 23: 523-529.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 523-529
-
-
Semon, M.1
Lobry, J.R.2
Duret, L.3
-
38
-
-
0020491327
-
Codon usage in bacteria: Correlation with gene expressivity
-
Gouy M, Gautier C (1982) Codon usage in bacteria: correlation with gene expressivity. Nucleic Acids Res 10: 7055-7064.
-
(1982)
Nucleic Acids Res
, vol.10
, pp. 7055-7064
-
-
Gouy, M.1
Gautier, C.2
-
39
-
-
0019824131
-
Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E coli translational system
-
Ikemura T (1981) Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E coli translational system. J Mol Biol 151: 389-409.
-
(1981)
J Mol Biol
, vol.151
, pp. 389-409
-
-
Ikemura, T.1
-
40
-
-
13444249920
-
Mutation and selection on the anticodon of tRNA genes in vertebrate mitochondrial genomes
-
Xia X (2005) Mutation and selection on the anticodon of tRNA genes in vertebrate mitochondrial genomes. Gene 345: 13-20.
-
(2005)
Gene
, vol.345
, pp. 13-20
-
-
Xia, X.1
-
41
-
-
0031805147
-
How optimized is the translational machinery in Escherichia coli, Salmonella typhimurium and Saccharomyces cerevisiae?
-
Xia X (1998) How optimized is the translational machinery in Escherichia coli, Salmonella typhimurium and Saccharomyces cerevisiae? Genetics 149: 37-44.
-
(1998)
Genetics
, vol.149
, pp. 37-44
-
-
Xia, X.1
-
42
-
-
4344647504
-
Tissue-specific codon usage and the expression of human genes
-
Plotkin JB, Robins H, Levine AJ (2004) Tissue-specific codon usage and the expression of human genes. Proc Natl Acad Sci U S A 101: 12588-12591.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 12588-12591
-
-
Plotkin, J.B.1
Robins, H.2
Levine, A.J.3
-
43
-
-
0030854739
-
tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
44
-
-
0022552131
-
Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes
-
Kozak M (1986) Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes. Cell 44: 283-292.
-
(1986)
Cell
, vol.44
, pp. 283-292
-
-
Kozak, M.1
-
45
-
-
33644891029
-
Highly expressed proteins have an increased frequency of alanine in the second amino acid position
-
Tats A, Remm M, Tenson T (2006) Highly expressed proteins have an increased frequency of alanine in the second amino acid position. BMC Genomics 7: 28.
-
(2006)
BMC Genomics
, vol.7
, pp. 28
-
-
Tats, A.1
Remm, M.2
Tenson, T.3
-
46
-
-
0022508657
-
Sequence determinants of cytosolic N-terminal protein processing
-
Flinta C, Persson B, Jornvall H, von Heijne G (1986) Sequence determinants of cytosolic N-terminal protein processing. Eur J Biochem 154: 193-196.
-
(1986)
Eur J Biochem
, vol.154
, pp. 193-196
-
-
Flinta, C.1
Persson, B.2
Jornvall, H.3
von Heijne, G.4
-
47
-
-
33845993905
-
The Proteomics of N-terminal Methionine Cleavage
-
Frottin F, Martinez A, Peynot P, Mitra S, Holz RC, et al. (2006) The Proteomics of N-terminal Methionine Cleavage. Mol Cell Proteomics 5: 2336-2349.
-
(2006)
Mol Cell Proteomics
, vol.5
, pp. 2336-2349
-
-
Frottin, F.1
Martinez, A.2
Peynot, P.3
Mitra, S.4
Holz, R.C.5
|