-
1
-
-
33847688859
-
Repair of alkylated DNA: Recent advances
-
DOI 10.1016/j.dnarep.2006.10.005, PII S1568786406003156, Repair of small base lesions in DNA-from molecular biology to phenotype
-
B. Sedgwick P.A. Bates J. Paik S.C. Jacobs T. Lindahl 2007 Repair of alkylated DNA: recent advances DNA Repair 6 429 442 10.1016/j.dnarep.2006.10.005 1:CAS:528:DC%2BD2sXislWmt7k%3D (Pubitemid 46357047)
-
(2007)
DNA Repair
, vol.6
, Issue.4
, pp. 429-442
-
-
Sedgwick, B.1
Bates, P.A.2
Paik, J.3
Jacobs, S.C.4
Lindahl, T.5
-
2
-
-
0037068446
-
Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage
-
DOI 10.1038/nature00908
-
S.C. Trewick T.F. Henshaw R.P. Hausinger T. Lindahl B. Sedgwick 2002 Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage Nature 419 174 178 10.1038/nature00908 1:CAS:528:DC%2BD38XmvV2qsrk%3D (Pubitemid 35025446)
-
(2002)
Nature
, vol.419
, Issue.6903
, pp. 174-178
-
-
Trewick, S.C.1
Henshaw, T.F.2
Hausinger, R.P.3
Lindahl, T.4
Sedgwick, B.5
-
3
-
-
0037068433
-
AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli
-
DOI 10.1038/nature01048
-
P.O. Falnes R.F. Johansen E. Seeberg 2002 AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli Nature 419 178 182 10.1038/nature01048 1:CAS:528:DC%2BD38XmvV2qtr4%3D (Pubitemid 35025447)
-
(2002)
Nature
, vol.419
, Issue.6903
, pp. 178-182
-
-
Falnes, P.O.1
Johansen, R.F.2
Seeberg, E.3
-
4
-
-
54049092869
-
Human AlkB homolog 1 is a mitochondrial pro tein that demethylates 3-methylcytosine in DNA and RNA
-
10.1074/jbc.M803776200 1:CAS:528:DC%2BD1cXhtVGktbbI
-
M.P. Westbye E. Feyzi P.A. Aas C.B. Vagbo V.A. Talstad B. Kavli L. Hagen O. Sundheim M. Akbari N.B. Liabakk G. Slupphaug M. Otterlei H.E. Krokan 2008 Human AlkB homolog 1 is a mitochondrial pro tein that demethylates 3-methylcytosine in DNA and RNA J Biol Chem 283 25046 25056 10.1074/jbc. M803776200 1:CAS:528:DC%2BD1cXhtVGktbbI
-
(2008)
J Biol Chem
, vol.283
, pp. 25046-25056
-
-
Westbye, M.P.1
Feyzi, E.2
Aas, P.A.3
Vagbo, C.B.4
Talstad, V.A.5
Kavli, B.6
Hagen, L.7
Sundheim, O.8
Akbari, M.9
Liabakk, N.B.10
Slupphaug, G.11
Otterlei, M.12
Krokan, H.E.13
-
6
-
-
0037456369
-
Human and bacterial oxidative demethylases repair alkylation damage in both RNA and DNA
-
DOI 10.1038/nature01363
-
P.A. Aas M. Otterlei P.O. Falnes C.B. Vagbo F. Skorpen M. Akbari O. Sundheim M. Bjoras G. Slupphaug E. Seeberg H.E. Krokan 2003 Human and bacterial oxidative demethylases repair alkylation damage in both RNA and DNA Nature 421 859 863 10.1038/nature01363 1:CAS:528:DC%2BD3sXht1Kqt74%3D (Pubitemid 36258356)
-
(2003)
Nature
, vol.421
, Issue.6925
, pp. 859-863
-
-
Aas, P.A.1
Otterlei, M.2
Falnes, P.O.3
Vagbo, C.B.4
Skorpen, F.5
Akbari, M.6
Sundheim, O.7
Bjoras, M.8
Slupphaug, G.9
Seeberg, E.10
Krokan, H.E.11
-
7
-
-
28244466886
-
Repair of methylation damage in DNA and RNA by mammalian AlkB homologues
-
DOI 10.1074/jbc.M509881200
-
D.H. Lee S.G. Jin S. Cai Y. Chen G.P. Pfeifer T.R. O'connor 2005 Repair of methylation damage in DNA and RNA by mammalian AlkB homologues J Biol Chem 280 39448 39459 10.1074/jbc.M509881200 1:CAS:528:DC%2BD2MXht1emsrfK (Pubitemid 41713902)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.47
, pp. 39448-39459
-
-
Lee, D.-H.1
Jin, S.-G.2
Cai, S.3
Chen, Y.4
Pfeifer, G.P.5
O'Connor, T.R.6
-
8
-
-
36749041363
-
The obesity-associated FTO gene encodes a 2-oxoglutarate-dependent nucleic acid demethylase
-
DOI 10.1126/science.1151710
-
T. Gerken C.A. Girard Y.C. Tung C.J. Webby V. Saudek K.S. Hewitson G.S. Yeo M.A. Mcdonough S. Cunliffe L.A. Mcneill J. Galvanovskis P. Rorsman P. Robins X. Prieur A.P. Coll M. Ma Z. Jovanovic I.S. Farooqi B. Sedgwick I. Barroso T. Lindahl C.P. Ponting F.M. Ashcroft S. O'rahilly C.J. Schofield 2007 The obesity-associated FTO gene encodes a 2-oxoglutarate-dependent nucleic acid demethylase Science 318 1469 1472 10.1126/science.1151710 1:CAS:528: DC%2BD2sXhtlGmtLbI (Pubitemid 350208961)
-
(2007)
Science
, vol.318
, Issue.5855
, pp. 1469-1472
-
-
Gerken, T.1
Girard, C.A.2
Tung, Y.-C.L.3
Webby, C.J.4
Saudek, V.5
Hewitson, K.S.6
Yeo, G.S.H.7
McDonough, M.A.8
Cunliffe, S.9
McNeill, L.A.10
Galvanovskis, J.11
Rorsman, P.12
Robins, P.13
Prieur, X.14
Coll, A.P.15
Ma, M.16
Jovanovic, Z.17
Farooqi, I.S.18
Sedgwick, B.19
Barroso, I.20
Lindahl, T.21
Ponting, C.P.22
Ashcroft, F.M.23
O'Rahilly, S.24
Schofield, C.J.25
more..
-
9
-
-
54849381000
-
Oxidative demethylation of 3-methylthymine and 3-methyluracil in single-stranded DNA and RNA by mouse and human FTO
-
10.1016/j.febslet.2008.08.019 1:CAS:528:DC%2BD1cXht1Snur3I
-
G. Jia C.G. Yang S. Yang X. Jian C. Yi Z. Zhou C. He 2008 Oxidative demethylation of 3-methylthymine and 3-methyluracil in single-stranded DNA and RNA by mouse and human FTO FEBS Lett 582 3313 3319 10.1016/j.febslet.2008.08.019 1:CAS:528:DC%2BD1cXht1Snur3I
-
(2008)
FEBS Lett
, vol.582
, pp. 3313-3319
-
-
Jia, G.1
Yang, C.G.2
Yang, S.3
Jian, X.4
Yi, C.5
Zhou, Z.6
He, C.7
-
10
-
-
33646778831
-
Repair deficient mice reveal mABH2 as the primary oxidative demethylase for repairing 1meA and 3meC lesions in DNA
-
DOI 10.1038/sj.emboj.7601109, PII 7601109
-
J. Ringvoll L.M. Nordstrand C.B. Vagbo V. Talstad K. Reite P.A. Aas K.H. Lauritzen N.B. Liabakk A. Bjork R.W. Doughty P.O. Falnes H.E. Krokan A. Klungland 2006 Repair deficient mice reveal mABH2 as the primary oxidative demethylase for repairing 1meA and 3meC lesions in DNA EMBO J 25 2189 2198 10.1038/sj.emboj.7601109 1:CAS:528:DC%2BD28Xks1ajsr0%3D (Pubitemid 43756234)
-
(2006)
EMBO Journal
, vol.25
, Issue.10
, pp. 2189-2198
-
-
Ringvoll, J.1
Nordstrand, L.M.2
Vagbo, C.B.3
Talstad, V.4
Reite, K.5
Aas, P.A.6
Lauritzen, K.H.7
Liabakk, N.B.8
Bjork, A.9
Doughty, R.W.10
Falnes, P.O.11
Krokan, H.E.12
Klungland, A.13
-
11
-
-
74049151209
-
A non-heme iron-mediated chemical demethylation in DNA and RNA
-
Yi C, Yang CG, He C. A non-heme iron-mediated chemical demethylation in DNA and RNA. Acc Chem Res, 2009
-
(2009)
Acc Chem Res
-
-
Yi, C.1
Yang, C.G.2
He, C.3
-
12
-
-
33644639463
-
Direct reversal of DNA alkylation damage
-
DOI 10.1021/cr0404702
-
Y. Mishina E.M. Duguid C. He 2006 Direct reversal of DNA alkylation damage Chem Rev 106 215 232 10.1021/cr0404702 1:CAS:528:DC%2BD28XoslWqtA%3D%3D (Pubitemid 43322986)
-
(2006)
Chemical Reviews
, vol.106
, Issue.2
, pp. 215-232
-
-
Mishina, Y.1
Duguid, E.M.2
He, C.3
-
13
-
-
0742305875
-
Repairing DNA-methylation damage
-
DOI 10.1038/nrm1312
-
B. Sedgwick 2004 Repairing DNA-methylation damage Nat Rev Mol Cell Biol 5 148 157 10.1038/nrm1312 1:CAS:528:DC%2BD2cXnsFKqug%3D%3D (Pubitemid 38160257)
-
(2004)
Nature Reviews Molecular Cell Biology
, vol.5
, Issue.2
, pp. 148-157
-
-
Sedgwick, B.1
-
14
-
-
4644282150
-
Mutagenesis, genotoxicity, and repair of 1-methyladenine, 3-alkylcytosines, 1-methylguanine, and 3-methylthymine in alkB Escherichia coli
-
DOI 10.1073/pnas.0403489101
-
J.C. Delaney J.M. Essigmann 2004 Mutagenesis, genotoxicity, and repair of 1-methyladenine, 3-alkylcytosines, 1-methylguanine, and 3-methylthymine in alkB Escherichia coli Proc Natl Acad Sci U S A 101 14051 14056 10.1073/pnas. 0403489101 1:CAS:528:DC%2BD2cXosVyls78%3D (Pubitemid 39305028)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.39
, pp. 14051-14056
-
-
Delaney, J.C.1
Essigmann, J.M.2
-
15
-
-
13444280435
-
Repair of 3-methylthymine and 1-methylguanine lesions by bacterial and human AlkB proteins
-
DOI 10.1093/nar/gkh964
-
P.O. Falnes 2004 Repair of 3-methylthymine and 1-methylguanine lesions by bacterial and human AlkB proteins Nucleic Acids Res 32 6260 6267 10.1093/nar/gkh964 1:CAS:528:DC%2BD2cXhtVOjs7zN (Pubitemid 40202084)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.21
, pp. 6260-6267
-
-
Falnes, P.O.1
-
16
-
-
4644343184
-
Demethylation of 3-methylthymine in DNA by bacterial and human DNA dioxygenases
-
DOI 10.1074/jbc.M407960200
-
P. Koivisto P. Robins T. Lindahl B. Sedgwick 2004 Demethylation of 3-methylthymine in DNA by bacterial and human DNA dioxygenases J Biol Chem 279 40470 40474 10.1074/jbc.M407960200 1:CAS:528:DC%2BD2cXnslWnsLY%3D (Pubitemid 39287637)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.39
, pp. 40470-40474
-
-
Koivisto, P.1
Robins, P.2
Lindahl, T.3
Sedgwiek, B.4
-
17
-
-
27144535750
-
AlkB reverses etheno DNA lesions caused by lipid oxidation in vitro and in vivo
-
DOI 10.1038/nsmb996, PII N996
-
J.C. Delaney L. Smeester C. Wong L.E. Frick K. Taghizadeh J.S. Wishnok C.L. Drennan L.D. Samson J.M. Essigmann 2005 AlkB reverses etheno DNA lesions caused by lipid oxidation in vitro and in vivo Nat Struct Mol Biol 12 855 860 10.1038/nsmb996 1:CAS:528:DC%2BD2MXhtVKnsrnO (Pubitemid 41486708)
-
(2005)
Nature Structural and Molecular Biology
, vol.12
, Issue.10
, pp. 855-860
-
-
Delaney, J.C.1
Smeester, L.2
Wong, C.3
Frick, L.E.4
Taghizadeh, K.5
Wishnok, J.S.6
Drennan, C.L.7
Samson, L.D.8
Essigmann, J.M.9
-
18
-
-
27244460131
-
6-ethenoadenine by the DNA repair AlkB proteins
-
DOI 10.1021/ja055957m
-
Y. Mishina C.G. Yang C. He 2005 Direct repair of the exocyclic DNA adduct 1,N6-ethenoadenine by the DNA repair AlkB proteins J Am Chem Soc 127 14594 14595 10.1021/ja055957m 1:CAS:528:DC%2BD2MXhtVGqtrzO (Pubitemid 41511120)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.42
, pp. 14594-14595
-
-
Mishina, Y.1
Yang, C.-G.2
He, C.3
-
19
-
-
0031744963
-
Repair in Escherichia coli AlkB mutants of abasic sites and 3-methyladenine residues in DNA
-
1:CAS:528:DyaK1cXisFaktrs%3D
-
S. Dinglay B. Gold B. Sedgwick 1998 Repair in Escherichia coli AlkB mutants of abasic sites and 3-methyladenine residues in DNA Mutat Res 407 109 116 1:CAS:528:DyaK1cXisFaktrs%3D
-
(1998)
Mutat Res
, vol.407
, pp. 109-116
-
-
Dinglay, S.1
Gold, B.2
Sedgwick, B.3
-
20
-
-
32844455577
-
Crystal structures of catalytic complexes of the oxidative DNA/RNA repair enzyme AlkB
-
DOI 10.1038/nature04561, PII NATURE04561
-
B. Yu W.C. Edstrom J. Benach Y. Hamuro P.C. Weber B.R. Gibney J.F. Hunt 2006 Crystal structures of catalytic complexes of the oxidative DNA/RNA repair enzyme AlkB Nature 439 879 884 10.1038/nature04561 1:CAS:528: DC%2BD28XhsVSku7k%3D (Pubitemid 43255709)
-
(2006)
Nature
, vol.439
, Issue.7078
, pp. 879-884
-
-
Yu, B.1
Edstrom, W.C.2
Benach, J.3
Hamuro, Y.4
Weber, P.C.5
Gibney, B.R.6
Hunt, J.F.7
-
21
-
-
33746622565
-
Human ABH3 structure and key residues for oxidative demethylation to reverse DNA/RNA damage
-
DOI 10.1038/sj.emboj.7601219, PII 7601219
-
O. Sundheim C.B. Vagbo M. Bjoras M.M. Sousa V. Talstad P.A. Aas F. Drablos H.E. Krokan J.A. Tainer G. Slupphaug 2006 Human ABH3 structure and key residues for oxidative demethylation to reverse DNA/RNA damage EMBO J 25 3389 3397 10.1038/sj.emboj.7601219 1:CAS:528:DC%2BD28Xnt1yqurg%3D (Pubitemid 44144212)
-
(2006)
EMBO Journal
, vol.25
, Issue.14
, pp. 3389-3397
-
-
Sundheim, O.1
Vagbo, C.B.2
Bjoras, M.3
Sousa, M.M.L.4
Talstad, V.5
Aas, P.A.6
Drablos, F.7
Krokan, H.E.8
Tainer, J.A.9
Slupphaug, G.10
-
22
-
-
42549128712
-
Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA
-
DOI 10.1038/nature06889, PII NATURE06889
-
C.G. Yang C. Yi E.M. Duguid C.T. Sullivan X. Jian P.A. Rice C. He 2008 Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA Nature 452 961 965 10.1038/nature06889 1:CAS:528:DC%2BD1cXltVGrtL8%3D (Pubitemid 351589622)
-
(2008)
Nature
, vol.452
, Issue.7190
, pp. 961-965
-
-
Yang, C.-G.1
Yi, C.2
Duguid, E.M.3
Sullivan, C.T.4
Jian, X.5
Rice, P.A.6
He, C.7
-
23
-
-
0037622620
-
Probing the structure and function of the Escherichia coli DNA alkylation repair AlkB protein through chemical cross-linking
-
DOI 10.1021/ja034636c
-
Y. Mishina C. He 2003 Probing the structure and function of the Escherichia coli DNA alkylation repair AlkB protein through chemical cross-linking J Am Chem Soc 125 8730 8731 10.1021/ja034636c 1:CAS:528: DC%2BD3sXkvFWlsr8%3D (Pubitemid 36886203)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.29
, pp. 8730-8731
-
-
Mishina, Y.1
He, C.2
-
24
-
-
11244324054
-
Preparation and characterization of the native iron(II)-containing DNA repair AlkB protein directly from Escherichia coli
-
DOI 10.1021/ja045066z
-
Y. Mishina L.X. Chen C. He 2004 Preparation and characterization of the native iron(II)-containing DNA repair AlkB protein directly from Escherichia coli J Am Chem Soc 126 16930 16936 10.1021/ja045066z 1:CAS:528: DC%2BD2cXhtVCrurrP (Pubitemid 40069508)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.51
, pp. 16930-16936
-
-
Mishina, Y.1
Chen, L.X.2
He, C.3
-
25
-
-
0037321932
-
Erratum: Pushing the boundaries of molecular replacement with maximum likelihood. (Acta Crystallographica (2001) D57 (1373-1382))
-
DOI 10.1107/S0907444903000490
-
R.J. Read 2003 Pushing the boundaries of molecular replacement with maximum likelihood. (2001, 57: 1373-1382) Acta Crystallogr Sec D-Bio Crystallogr 59 404 404 10.1107/S0907444903000490 (Pubitemid 36224876)
-
(2003)
Acta Crystallographica Section D: Biological Crystallography
, vol.59
, Issue.2
, pp. 404
-
-
Read, R.J.1
-
27
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
DOI 10.1107/S0907444994003112
-
S. Bailey 1994 The Ccp4 suite: programs for protein crystallography Acta Crystallogr Sec D-Bio Crystallogr 50 760 763 10.1107/S0907444994003112 (Pubitemid 2143461)
-
(1994)
Acta Crystallographica Section D: Biological Crystallography
, vol.50
, Issue.5
, pp. 760-763
-
-
-
28
-
-
76449114883
-
-
Delano W L D S, Palo Alto, Ca. 2002
-
Delano W L D S, Palo Alto, Ca. 2002
-
-
-
|