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Volumn 4, Issue 1, 2010, Pages 15-23

Coherent activation of a synthetic mammalian gene network

Author keywords

Gene regulation; Positive feedback; Signaling dynamics; Synthetic gene network

Indexed keywords

MAMMALIA;

EID: 76149098825     PISSN: 18725325     EISSN: 18725333     Source Type: Journal    
DOI: 10.1007/s11693-009-9044-5     Document Type: Article
Times cited : (7)

References (35)
  • 1
    • 0035125306 scopus 로고    scopus 로고
    • The interplay between cyclin-B-Cdc2 kinase (MPF) and MAP kinase during maturation of oocytes
    • Abrieu A, Dorée M, Fisher D (2001) The interplay between cyclin-B-Cdc2 kinase (MPF) and MAP kinase during maturation of oocytes. J Cell Sci 114: 257-267.
    • (2001) J Cell Sci , vol.114 , pp. 257-267
    • Abrieu, A.1    Dorée, M.2    Fisher, D.3
  • 2
    • 41549132691 scopus 로고    scopus 로고
    • Quantitative analysis of pathways controlling extrinsic apoptosis in single cells
    • doi:10.1016/j.molcel.2008.02.012
    • Albeck JG, Burke JM, Aldridge BB, Zhang M, Lauffenburger DA, Sorger PK (2008) Quantitative analysis of pathways controlling extrinsic apoptosis in single cells. Mol Cell 30: 11-25. doi: 10. 1016/j. molcel. 2008. 02. 012.
    • (2008) Mol Cell , vol.30 , pp. 11-25
    • Albeck, J.G.1    Burke, J.M.2    Aldridge, B.B.3    Zhang, M.4    Lauffenburger, D.A.5    Sorger, P.K.6
  • 3
    • 27144517984 scopus 로고    scopus 로고
    • Interlinked fast and slow positive feedback loops drive reliable cell decisions
    • doi:10.1126/science.1113834
    • Brandman O, Ferrell JE Jr, Li R, Meyer T (2005) Interlinked fast and slow positive feedback loops drive reliable cell decisions. Science 310: 496-498. doi: 10. 1126/science. 1113834.
    • (2005) Science , vol.310 , pp. 496-498
    • Brandman, O.1    Ferrell Jr., J.E.2    Li, R.3    Meyer, T.4
  • 5
    • 0037119587 scopus 로고    scopus 로고
    • Stochastic gene expression in a single cell
    • doi:10.1126/science.1070919
    • Elowitz MB, Levine AJ, Siggia ED, Swain PS (2002) Stochastic gene expression in a single cell. Science 297: 1183-1186. doi: 10. 1126/science. 1070919.
    • (2002) Science , vol.297 , pp. 1183-1186
    • Elowitz, M.B.1    Levine, A.J.2    Siggia, E.D.3    Swain, P.S.4
  • 6
    • 0036532226 scopus 로고    scopus 로고
    • Self-perpetuating states in signal transduction: Positive feedback, double-negative feedback and bistability
    • doi:10.1016/S09550674(02)00314-9
    • Ferrell JE Jr (2002) Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. Curr Opin Cell Biol 14: 140-148. doi: 10. 1016/S09550674(02)00314-9.
    • (2002) Curr Opin Cell Biol , vol.14 , pp. 140-148
    • Ferrell Jr., J.E.1
  • 7
    • 0032496358 scopus 로고    scopus 로고
    • The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes
    • doi:10.1126/science.280.5365.895
    • Ferrell JE Jr, Machleder EM (1998) The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes. Science 280: 895-898. doi: 10. 1126/science. 280. 5365. 895.
    • (1998) Science , vol.280 , pp. 895-898
    • Ferrell Jr., J.E.1    Machleder, E.M.2
  • 8
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • doi:10.1021/j100540a008
    • Gillespie DT (1977) Exact stochastic simulation of coupled chemical reactions. J Phys Chem 81: 2340-2361. doi: 10. 1021/j100540a008.
    • (1977) J Phys Chem , vol.81 , pp. 2340-2361
    • Gillespie, D.T.1
  • 9
    • 0033781027 scopus 로고    scopus 로고
    • The coordinate release of cytochrome c during apoptosis is rapid, complete and kinetically invariant
    • doi:10.1038/35004029
    • Goldstein JC, Waterhouse NJ, Juin P, Evan GI, Green DR (2000) The coordinate release of cytochrome c during apoptosis is rapid, complete and kinetically invariant. Nat Cell Biol 2: 156-162. doi: 10. 1038/35004029.
    • (2000) Nat Cell Biol , vol.2 , pp. 156-162
    • Goldstein, J.C.1    Waterhouse, N.J.2    Juin, P.3    Evan, G.I.4    Green, D.R.5
  • 10
    • 0026720075 scopus 로고
    • Tight control of gene expression in mammalian cells by tetracycline-responsive promoters
    • doi:10.1073/pnas.89.12.5547
    • Gossen M, Bujard H (1992) Tight control of gene expression in mammalian cells by tetracycline-responsive promoters. Proc Natl Acad Sci USA 89: 5547-5551. doi: 10. 1073/pnas. 89. 12. 5547.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 5547-5551
    • Gossen, M.1    Bujard, H.2
  • 11
    • 0029022369 scopus 로고
    • Transcriptional activation by tetracyclines in mammalian cells
    • doi:10.1126/science.7792603
    • Gossen M, Freundlieb S, Bender G, Müller G, Hillen W, Bujard H (1995) Transcriptional activation by tetracyclines in mammalian cells. Science 268: 1766-1769. doi: 10. 1126/science. 7792603.
    • (1995) Science , vol.268 , pp. 1766-1769
    • Gossen, M.1    Freundlieb, S.2    Bender, G.3    Müller, G.4    Hillen, W.5    Bujard, H.6
  • 12
    • 34347389431 scopus 로고    scopus 로고
    • Mammalian synthetic biology: Engineering of sophisticated gene networks
    • doi:10.1016/j.jbiotec.2007.05.014
    • Greber D, Fussenegger M (2007) Mammalian synthetic biology: engineering of sophisticated gene networks. J Biotechnol 130: 329-345. doi: 10. 1016/j. jbiotec. 2007. 05. 014.
    • (2007) J Biotechnol , vol.130 , pp. 329-345
    • Greber, D.1    Fussenegger, M.2
  • 13
    • 22144452865 scopus 로고    scopus 로고
    • Hysteresis in a synthetic mammalian gene network
    • doi:10.1073/pnas.0500345102
    • Kramer BP, Fussenegger M (2005) Hysteresis in a synthetic mammalian gene network. Proc Natl Acad Sci USA 102: 9517-9522. doi: 10. 1073/pnas. 0500345102.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 9517-9522
    • Kramer, B.P.1    Fussenegger, M.2
  • 15
    • 2142653082 scopus 로고    scopus 로고
    • The sonic hedgehog signaling system as a bistable genetic switch
    • doi:10.1016/S0006-3495(04)74328-3
    • Lai K, Robertson MJ, Schaffer DV (2004) The sonic hedgehog signaling system as a bistable genetic switch. Biophys J 86: 2748-2757. doi: 10. 1016/S0006-3495(04)74328-3.
    • (2004) Biophys J , vol.86 , pp. 2748-2757
    • Lai, K.1    Robertson, M.J.2    Schaffer, D.V.3
  • 16
    • 33749370199 scopus 로고    scopus 로고
    • Mathematical modeling identifies inhibitors of apoptosis as mediators of positive feedback and bistability
    • doi:10.1371/journal.pcbi.0020120
    • Legewie S, Bluthgen N, Herzel H (2006) Mathematical modeling identifies inhibitors of apoptosis as mediators of positive feedback and bistability. PLoS Comput Biol 2: e120. doi: 10. 1371/journal. pcbi. 0020120.
    • (2006) PLoS Comput Biol , vol.2
    • Legewie, S.1    Bluthgen, N.2    Herzel, H.3
  • 17
    • 0035064074 scopus 로고    scopus 로고
    • Calcium signaling mechanisms in T lymphocytes
    • doi:10.1146/annurev.immunol.19.1.497
    • Lewis RS (2001) Calcium signaling mechanisms in T lymphocytes. Annu Rev Immunol 19: 497-521. doi: 10. 1146/annurev. immunol. 19. 1. 497.
    • (2001) Annu Rev Immunol , vol.19 , pp. 497-521
    • Lewis, R.S.1
  • 18
    • 33846097600 scopus 로고    scopus 로고
    • Dynamics of single-cell gene expression
    • doi:10.1038/msb4100110
    • Longo D, Hasty J (2006) Dynamics of single-cell gene expression. Mol Syst Biol 2: 64. doi: 10. 1038/msb4100110.
    • (2006) Mol Syst Biol , vol.2 , pp. 64
    • Longo, D.1    Hasty, J.2
  • 19
    • 28644442724 scopus 로고    scopus 로고
    • Comparison of single regulated lentiviral vectors with rtTA expression driven by an autoregulatory loop or a constitutive promoter
    • doi:10.1093/nar/gni062
    • Markusic D, Oude-Elferink R, Das AT, Berkhout B, Seppen J (2005) Comparison of single regulated lentiviral vectors with rtTA expression driven by an autoregulatory loop or a constitutive promoter. Nucleic Acids Res 33: e63. doi: 10. 1093/nar/gni062.
    • (2005) Nucleic Acids Res , vol.33
    • Markusic, D.1    Oude-Elferink, R.2    Das, A.T.3    Berkhout, B.4    Seppen, J.5
  • 20
    • 48649104164 scopus 로고    scopus 로고
    • Bimodal and hysteretic expression in mammalian cells from a synthetic gene circuit
    • doi:10.1371/journal.pone.0002372
    • May T, Eccleston L, Herrmann S, Hauser H, Goncalves J, Wirth D (2008) Bimodal and hysteretic expression in mammalian cells from a synthetic gene circuit. PLoS ONE 3: e2372. doi: 10. 1371/journal. pone. 0002372.
    • (2008) PLoS ONE , vol.3
    • May, T.1    Eccleston, L.2    Herrmann, S.3    Hauser, H.4    Goncalves, J.5    Wirth, D.6
  • 21
    • 45549097452 scopus 로고    scopus 로고
    • Positive feedback in cellular control systems
    • doi:10.1002/bies.20769
    • Mitrophanov AY, Groisman EA (2008) Positive feedback in cellular control systems. Bioessays 30: 542-555. doi: 10. 1002/bies. 20769.
    • (2008) Bioessays , vol.30 , pp. 542-555
    • Mitrophanov, A.Y.1    Groisman, E.A.2
  • 22
    • 53549123008 scopus 로고    scopus 로고
    • Nature, nurture, or chance: Stochastic gene expression and its consequences
    • doi:10.1016/j.cell.2008.09.050
    • Raj A, van Oudenaarden A (2008) Nature, nurture, or chance: stochastic gene expression and its consequences. Cell 135: 216-226. doi: 10. 1016/j. cell. 2008. 09. 050.
    • (2008) Cell , vol.135 , pp. 216-226
    • Raj, A.1    van Oudenaarden, A.2
  • 23
    • 2942718723 scopus 로고    scopus 로고
    • Control of stochasticity in eukaryotic gene expression
    • doi:10.1126/science.1098641
    • Raser JM, O'Shea EK (2004) Control of stochasticity in eukaryotic gene expression. Science 304: 1811-1814. doi: 10. 1126/science. 1098641.
    • (2004) Science , vol.304 , pp. 1811-1814
    • Raser, J.M.1    O'shea, E.K.2
  • 24
    • 25444468618 scopus 로고    scopus 로고
    • Noise in gene expression: Origins, consequences, and control
    • doi:10.1126/science.1105891
    • Raser JM, O'Shea EK (2005) Noise in gene expression: origins, consequences, and control. Science 309: 2010-2013. doi: 10. 1126/science. 1105891.
    • (2005) Science , vol.309 , pp. 2010-2013
    • Raser, J.M.1    O'shea, E.K.2
  • 25
    • 0037025346 scopus 로고    scopus 로고
    • Single-cell fluorescence resonance energy transfer analysis demonstrates that caspase activation during apoptosis is a rapid process
    • doi:10.1074/jbc.M110789200
    • Rehm M, Dussmann H, Janicke RU, Tavare JM, Kogel D, Prehn JH (2002) Single-cell fluorescence resonance energy transfer analysis demonstrates that caspase activation during apoptosis is a rapid process. J Biol Chem 277: 24506-24514. doi: 10. 1074/jbc. M110789200.
    • (2002) J Biol Chem , vol.277 , pp. 24506-24514
    • Rehm, M.1    Dussmann, H.2    Janicke, R.U.3    Tavare, J.M.4    Kogel, D.5    Prehn, J.H.6
  • 26
    • 0036807785 scopus 로고    scopus 로고
    • How to make tetracycline-regulated transgene expression go on and off
    • doi:10.1016/S0003-2697(02)00250-6
    • Rennel E, Gerwins P (2002) How to make tetracycline-regulated transgene expression go on and off. Anal Biochem 309: 79-84. doi: 10. 1016/S0003-2697(02)00250-6.
    • (2002) Anal Biochem , vol.309 , pp. 79-84
    • Rennel, E.1    Gerwins, P.2
  • 27
    • 0031740332 scopus 로고    scopus 로고
    • Tetracycline-regulatable factors with distinct dimerization domains allow reversible growth inhibition by p16
    • doi:10.1038/3871
    • Rossi FM, Guicherit OM, Spicher A, Kringstein AM, Fatyol K, Blakely BT, Blau HM (1998) Tetracycline-regulatable factors with distinct dimerization domains allow reversible growth inhibition by p16. Nat Genet 20: 389-393. doi: 10. 1038/3871.
    • (1998) Nat Genet , vol.20 , pp. 389-393
    • Rossi, F.M.1    Guicherit, O.M.2    Spicher, A.3    Kringstein, A.M.4    Fatyol, K.5    Blakely, B.T.6    Blau, H.M.7
  • 28
    • 47549106474 scopus 로고    scopus 로고
    • Positive feedback of G1 cyclins ensures coherent cell cycle entry
    • doi:10.1038/nature07118
    • Skotheim JM, Di Talia S, Siggia ED, Cross FR (2008) Positive feedback of G1 cyclins ensures coherent cell cycle entry. Nature 454: 291-296. doi: 10. 1038/nature07118.
    • (2008) Nature , vol.454 , pp. 291-296
    • Skotheim, J.M.1    Di Talia, S.2    Siggia, E.D.3    Cross, F.R.4
  • 29
    • 32844454497 scopus 로고    scopus 로고
    • Origins of extrinsic variability in eukaryotic gene expression
    • doi:10.1038/nature04281
    • Volfson D, Marciniak J, Blake WJ, Ostroff N, Tsimring LS, Hasty J (2006) Origins of extrinsic variability in eukaryotic gene expression. Nature 439: 861-864. doi: 10. 1038/nature04281.
    • (2006) Nature , vol.439 , pp. 861-864
    • Volfson, D.1    Marciniak, J.2    Blake, W.J.3    Ostroff, N.4    Tsimring, L.S.5    Hasty, J.6
  • 30
    • 0036264996 scopus 로고    scopus 로고
    • Cell fate determination from stem cells
    • doi:10.1038/sj/gt/3301717
    • Wagers AJ, Christensen JL, Weissman IL (2002) Cell fate determination from stem cells. Gene Ther 9: 606-612. doi: 10. 1038/sj/gt/3301717.
    • (2002) Gene Ther , vol.9 , pp. 606-612
    • Wagers, A.J.1    Christensen, J.L.2    Weissman, I.L.3
  • 31
    • 35649003180 scopus 로고    scopus 로고
    • A genetic time-delay circuitry in mammalian cells
    • doi:10.1002/bit.21463
    • Weber W, Kramer BP, Fussenegger M (2007) A genetic time-delay circuitry in mammalian cells. Biotechnol Bioeng 98: 894-902. doi: 10. 1002/bit. 21463.
    • (2007) Biotechnol Bioeng , vol.98 , pp. 894-902
    • Weber, W.1    Kramer, B.P.2    Fussenegger, M.3
  • 32
    • 4544295912 scopus 로고    scopus 로고
    • Robust cell polarity is a dynamic state established by coupling transport and GTPase signaling
    • doi:10.1083/jcb.200405061
    • Wedlich-Soldner R, Wai SC, Schmidt T, Li R (2004) Robust cell polarity is a dynamic state established by coupling transport and GTPase signaling. J Cell Biol 166: 889-900. doi: 10. 1083/jcb. 200405061.
    • (2004) J Cell Biol , vol.166 , pp. 889-900
    • Wedlich-Soldner, R.1    Wai, S.C.2    Schmidt, T.3    Li, R.4
  • 33
    • 0345359924 scopus 로고    scopus 로고
    • A positive-feedback-based bistable 'memory module' that governs a cell fate decision
    • doi:10.1038/nature02089
    • Xiong W, Ferrell JE Jr (2003) A positive-feedback-based bistable 'memory module' that governs a cell fate decision. Nature 426: 460-465. doi: 10. 1038/nature02089.
    • (2003) Nature , vol.426 , pp. 460-465
    • Xiong, W.1    Ferrell Jr., J.E.2
  • 34
    • 43149108161 scopus 로고    scopus 로고
    • A bistable Rb-E2F switch underlies the restriction point
    • doi:10.1038/ncb1711
    • Yao G, Lee TJ, Mori S, Nevins JR, You L (2008) A bistable Rb-E2F switch underlies the restriction point. Nat Cell Biol 10: 476-482. doi: 10. 1038/ncb1711.
    • (2008) Nat Cell Biol , vol.10 , pp. 476-482
    • Yao, G.1    Lee, T.J.2    Mori, S.3    Nevins, J.R.4    You, L.5
  • 35
    • 34848860189 scopus 로고    scopus 로고
    • Linking fast and slow positive feedback loops creates an optimal bistable switch in cell signaling
    • doi:10.1103/PhysRevE.76.031924
    • Zhang XP, Cheng Z, Liu F, Wang W (2007) Linking fast and slow positive feedback loops creates an optimal bistable switch in cell signaling. Phys Rev E 76: 031924. doi: 10. 1103/PhysRevE. 76. 031924.
    • (2007) Phys Rev E , vol.76 , pp. 031924
    • Zhang, X.P.1    Cheng, Z.2    Liu, F.3    Wang, W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.