-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul, S. et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
-
2
-
-
0033954256
-
The Protein Data Bank
-
Berman, H.M. et al. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
-
3
-
-
0038387389
-
Hit and lead generation: beyond high-throughput screening
-
Bleicher, K.H. et al. (2003) Hit and lead generation: beyond high-throughput screening. Nat. Rev. Drug Discov., 2, 369-378.
-
(2003)
Nat. Rev. Drug Discov.
, vol.2
, pp. 369-378
-
-
Bleicher, K.H.1
-
4
-
-
26944463088
-
Virtuals creen for ligands of orphan g protein-coupled receptors
-
Bock, J.R. and Gough, D.A. (2005)Virtuals creen for ligands of orphan g protein-coupled receptors. J. Chem. Inf. Model., 45, 1402-1414.
-
(2005)
J. Chem. Inf. Model.
, vol.45
, pp. 1402-1414
-
-
Bock, J.R.1
Gough, D.A.2
-
5
-
-
38349100452
-
A threading-based method (findsite) for ligand-binding site prediction and functional annotation
-
Brylinski, M. and Skolnick, J. (2008) A threading-based method (findsite) for ligand-binding site prediction and functional annotation. Proc. Natl Acad. Sci. USA, 105, 129-134.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 129-134
-
-
Brylinski, M.1
Skolnick, J.2
-
6
-
-
0036089049
-
Astral compendium enhancements
-
Chandonia, J.-M. et al. (2002) Astral compendium enhancements. Nucleic Acids Res., 30, 260-263.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 260-263
-
-
Chandonia, J.-M.1
-
7
-
-
36448960843
-
Pfres: protein fold classification by using evolutionary information and predicted secondary structure
-
Chen, K. and Kurgan, L. (2007) Pfres: protein fold classification by using evolutionary information and predicted secondary structure. Bioinformatics, 23, 2843-2850.
-
(2007)
Bioinformatics
, vol.23
, pp. 2843-2850
-
-
Chen, K.1
Kurgan, L.2
-
8
-
-
33646023117
-
An introduction to ROC analysis
-
Fawcett, T. (2006)An introduction to ROC analysis. Pattern Recogn. Lett., 27, 861-874.
-
(2006)
Pattern Recogn. Lett.
, vol.27
, pp. 861-874
-
-
Fawcett, T.1
-
9
-
-
40049091146
-
Prediction of protein functional residues from sequence by probability density estimation
-
Fischer, J.D. et al. (2008) Prediction of protein functional residues from sequence by probability density estimation. Bioinformatics, 24, 613-620.
-
(2008)
Bioinformatics
, vol.24
, pp. 613-620
-
-
Fischer, J.D.1
-
10
-
-
0042121000
-
ORFeus: detection of distant homology using sequence profiles and predicted secondary structure
-
Ginalski, K. et al. (2003) ORFeus: detection of distant homology using sequence profiles and predicted secondary structure. Nucleic Acids Res., 31, 3804-3807.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3804-3807
-
-
Ginalski, K.1
-
11
-
-
0035070578
-
Picasso: generating a covering set of protein family profiles
-
Heger, A. and Holm, L. (2001) Picasso: generating a covering set of protein family profiles. Bioinformatics, 17, 272-279.
-
(2001)
Bioinformatics
, vol.17
, pp. 272-279
-
-
Heger, A.1
Holm, L.2
-
13
-
-
33746267388
-
YASSPP: better kernels and coding schemes lead to improvements in SVM-based secondary structure prediction
-
Karypis, G. (2006) YASSPP: better kernels and coding schemes lead to improvements in SVM-based secondary structure prediction. Proteins Struct. Funct. Bioinform., 64, 575-586.
-
(2006)
Proteins Struct. Funct. Bioinform.
, vol.64
, pp. 575-586
-
-
Karypis, G.1
-
14
-
-
85086810601
-
Improving homology models for protein-ligand binding sites
-
San Francisco, CA. Available at, (last accessed date October 12, 2009)
-
Kauffman, C. et al. (2008) Improving homology models for protein-ligand binding sites. In LSS Comput Syst Bioinformatics Conference, San Francisco, CA. Available at www.cs.umn.edu/~karypis (last accessed date October 12, 2009).
-
(2008)
LSS Comput Syst Bioinformatics Conference
-
-
Kauffman, C.1
-
15
-
-
34547575992
-
firestar-prediction of functionally important residues using structural templates and alignment reliability
-
López, G. et al. (2007) firestar-prediction of functionally important residues using structural templates and alignment reliability. Nucleic Acids Res., 35, W573-W577.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
López, G.1
-
16
-
-
0041886960
-
Probabilistic scoring measures for profile-profile comparison yield more accurate short seed alignments
-
Mittelman, D. et al. (2003) Probabilistic scoring measures for profile-profile comparison yield more accurate short seed alignments. Bioinformatics, 19, 1531-1539.
-
(2003)
Bioinformatics
, vol.19
, pp. 1531-1539
-
-
Mittelman, D.1
-
17
-
-
40349087133
-
Towards the development of universal, fast and highly accurate docking//scoring methods: a long way to go
-
Moitessier, N. et al. (2007) Towards the development of universal, fast and highly accurate docking//scoring methods: a long way to go. Br. J. Pharmacol., 153, S7-S26.
-
(2007)
Br. J. Pharmacol.
, vol.153
-
-
Moitessier, N.1
-
18
-
-
33746950964
-
Prediction of catalytic residues using support vector machine with selected protein sequence and structural properties
-
Petrova, N.V. and Wu, C.H. (2006) Prediction of catalytic residues using support vector machine with selected protein sequence and structural properties. BMC Bioinformatics, 7, 312.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 312
-
-
Petrova, N.V.1
Wu, C.H.2
-
19
-
-
38449083927
-
frmsdpred: predicting local RMSD between structural fragments using sequence information
-
Rangwala, H. and Karypis, G. (2007) frmsdpred: predicting local RMSD between structural fragments using sequence information. Comput. Syst. Bioinform. Conf., 6, 311-322.
-
(2007)
Comput. Syst. Bioinform. Conf.
, vol.6
, pp. 311-322
-
-
Rangwala, H.1
Karypis, G.2
-
21
-
-
13044272912
-
Automated analysis of interatomic contacts in proteins
-
Sobolev, V. et al. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332.
-
(1999)
Bioinformatics
, vol.15
, pp. 327-332
-
-
Sobolev, V.1
-
23
-
-
0035993847
-
Systematic optimization of a lead-structure identities for a selective short peptide agonist for the human orphan receptor BRS-3
-
Weber, D. et al. (2002) Systematic optimization of a lead-structure identities for a selective short peptide agonist for the human orphan receptor BRS-3. J. Pept. Sci., 8, 461-475.
-
(2002)
J. Pept. Sci.
, vol.8
, pp. 461-475
-
-
Weber, D.1
-
24
-
-
33846554792
-
Evaluation of features for catalytic residue prediction in novel folds
-
Youn, E. et al. (2007) Evaluation of features for catalytic residue prediction in novel folds. Protein Sci., 16, 216-226.
-
(2007)
Protein Sci.
, vol.16
, pp. 216-226
-
-
Youn, E.1
|