-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0003516147
-
-
Cambridge University Press, Cambridge
-
Durbin,R., Krogh,A., Mitchison,G. and Eddy,S. (1999) Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. Cambridge University Press, Cambridge.
-
(1999)
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
-
-
Durbin, R.1
Krogh, A.2
Mitchison, G.3
Eddy, S.4
-
4
-
-
0031743421
-
Profile hidden Markov models
-
Eddy,S.R. (1998) Profile hidden Markov models. Bioinformatics, 14, 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
5
-
-
0027210418
-
Optimal alignment between groups of sequences and its application to multiple sequence alignment
-
Gotoh,O. (1993) Optimal alignment between groups of sequences and its application to multiple sequence alignment. Comput. Appl. Biosci., 9, 361-370.
-
(1993)
Comput. Appl. Biosci.
, vol.9
, pp. 361-370
-
-
Gotoh, O.1
-
6
-
-
0035070578
-
Picasso: Generating a covering set of protein family profiles
-
Heger,A. and Holm,L. (2001) Picasso: generating a covering set of protein family profiles. Bioinformatics, 17, 272-279.
-
(2001)
Bioinformatics
, vol.17
, pp. 272-279
-
-
Heger, A.1
Holm, L.2
-
7
-
-
0032776495
-
Blocks+: A non-redundant database of protein alignment blocks derived from multiple compilations
-
Henikoff,S., Henikoff,J.G. and Pietrokovski,S. (1999) Blocks+: a non-redundant database of protein alignment blocks derived from multiple compilations. Bioinformatics, 15, 471-479.
-
(1999)
Bioinformatics
, vol.15
, pp. 471-479
-
-
Henikoff, S.1
Henikoff, J.G.2
Pietrokovski, S.3
-
8
-
-
0033977579
-
Increased coverage of protein families with the blocks database servers
-
Henikoff,J.G., Greene,E.A., Pietrokovski,S. and Henikoff,S. (2000) Increased coverage of protein families with the blocks database servers. Nucleic Acids Res., 28, 228-230.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 228-230
-
-
Henikoff, J.G.1
Greene, E.A.2
Pietrokovski, S.3
Henikoff, S.4
-
9
-
-
0032613203
-
Predicting protein structure using only sequence information
-
Karplus,K., Barrett,C., Cline,M., Diekhans,M., Grate,L. and Hughey,R. (1999) Predicting protein structure using only sequence information. Proteins, 37, 121-125.
-
(1999)
Proteins
, vol.37
, pp. 121-125
-
-
Karplus, K.1
Barrett, C.2
Cline, M.3
Diekhans, M.4
Grate, L.5
Hughey, R.6
-
10
-
-
0028181441
-
Hidden Markov models in computational biology. Applications to protein modeling
-
Krogh,A., Brown,M., Mian,I.S., Sjolander,K. and Haussler,D. (1994) Hidden Markov models in computational biology. Applications to protein modeling. J. Mol. Biol., 235, 1501-1531.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1501-1531
-
-
Krogh, A.1
Brown, M.2
Mian, I.S.3
Sjolander, K.4
Haussler, D.5
-
11
-
-
0035970287
-
Consistency analysis of similarity between multiple alignments: Prediction of protein function and fold structure from analysis of local sequence motifs
-
Kunin,V., Chan,B., Sitbon,E., Lithwick,G. and Pietrokovski,S. (2001) Consistency analysis of similarity between multiple alignments: prediction of protein function and fold structure from analysis of local sequence motifs. J. Mol. Biol., 307, 939-949.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 939-949
-
-
Kunin, V.1
Chan, B.2
Sitbon, E.3
Lithwick, G.4
Pietrokovski, S.5
-
12
-
-
0032945593
-
DIALIGN 2: Improvement of the segment-to-segment approach to multiple sequence alignment
-
Morgenstern,B. (1999) DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment. Bioinformatics, 15, 211-218.
-
(1999)
Bioinformatics
, vol.15
, pp. 211-218
-
-
Morgenstern, B.1
-
13
-
-
0031854952
-
DIALIGN: Finding local similarities by multiple sequence alignment
-
Morgenstern,B., Frech,K., Dress,A. and Werner,T. (1998) DIALIGN: finding local similarities by multiple sequence alignment. Bioinformatics, 14, 290-294.
-
(1998)
Bioinformatics
, vol.14
, pp. 290-294
-
-
Morgenstern, B.1
Frech, K.2
Dress, A.3
Werner, T.4
-
14
-
-
0034843597
-
AL2CO: Calculation of positional conservation in a protein sequence alignment
-
Pei,J. and Grishin,N.V. (2001) AL2CO: calculation of positional conservation in a protein sequence alignment. Bioinformatics, 17, 700-712.
-
(2001)
Bioinformatics
, vol.17
, pp. 700-712
-
-
Pei, J.1
Grishin, N.V.2
-
15
-
-
0029789461
-
Searching databases of conserved sequence regions by aligning protein multiple-alignments
-
Pietrokovski,S. (1996) Searching databases of conserved sequence regions by aligning protein multiple-alignments. Nucleic Acids Res., 24, 3836-3845.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 3836-3845
-
-
Pietrokovski, S.1
-
16
-
-
0035312251
-
ParAlign: A parallel sequence alignment algorithm for rapid and sensitive database searches
-
Rognes,T. (2001) ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches. Nucleic Acids Res., 29, 1647-1652.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1647-1652
-
-
Rognes, T.1
-
17
-
-
0033997036
-
Comparison of sequence profiles. Strategies for structural predictions using sequence information
-
Rychlewski,L., Jaroszewski,L., Li,W. and Godzik,A. (2000) Comparison of sequence profiles. Strategies for structural predictions using sequence information. Protein Sci., 9, 232-241.
-
(2000)
Protein Sci.
, vol.9
, pp. 232-241
-
-
Rychlewski, L.1
Jaroszewski, L.2
Li, W.3
Godzik, A.4
-
18
-
-
0037423702
-
COMPASS: A tool for comparison of multiple protein alignments with assessment of statistical significance
-
Sadreyev,R. and Grishin,N. (2003) COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance. J. Mol. Biol., 326, 317-336.
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 317-336
-
-
Sadreyev, R.1
Grishin, N.2
-
19
-
-
0038438514
-
IMPALA: Matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices
-
Schaffer,A.A., Wolf,Y.I., Ponting,C.P., Koonin,E.V., Aravind,L. and Altschul,S.F. (1999) IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices. Bioinformatics, 15, 1000-1011.
-
(1999)
Bioinformatics
, vol.15
, pp. 1000-1011
-
-
Schaffer, A.A.1
Wolf, Y.I.2
Ponting, C.P.3
Koonin, E.V.4
Aravind, L.5
Altschul, S.F.6
-
20
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith,T.F. and Waterman,M.S. (1981) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
21
-
-
0033028454
-
PSIC: Profile extraction from sequence alignments with position-specific counts of independent observations
-
Sunyaev,S.R., Eisenhaber,F., Rodchenkov,I.V., EisenhaberB., Tumanyan,V.G. and Kuznetsov,E.N. (1999) PSIC: profile extraction from sequence alignments with position-specific counts of independent observations. Protein Eng., 12, 387-394.
-
(1999)
Protein Eng.
, vol.12
, pp. 387-394
-
-
Sunyaev, S.R.1
Eisenhaber, F.2
Rodchenkov, I.V.3
Eisenhaber, B.4
Tumanyan, V.G.5
Kuznetsov, E.N.6
-
22
-
-
0036307493
-
Within the twilight zone: A sensitive profile-profile comparison tool based on information theory
-
Yona,G. and Levitt,M. (2002) Within the twilight zone: a sensitive profile-profile comparison tool based on information theory. J. Mol. Biol., 315, 1257-1275.
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 1257-1275
-
-
Yona, G.1
Levitt, M.2
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