-
1
-
-
35848961668
-
How chromatin-binding modules interpret histone modifications: Lessons from professional pocket pickers
-
DOI 10.1038/nsmb1338, PII NSMB1338
-
SD Taverna H Li AJ Ruthenburg CD Allis DJ Patel 2007 How chromatin-binding modules interpret histone modifications: Lessons from professional pocket pickers Nat. Struct. Mol. Biol. 14 11 1025 1040 10.1038/nsmb1338 (Pubitemid 350060344)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.11
, pp. 1025-1040
-
-
Taverna, S.D.1
Li, H.2
Ruthenburg, A.J.3
Allis, C.D.4
Patel, D.J.5
-
2
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
DOI 10.1016/j.cell.2007.05.009, PII S0092867407006009
-
A Barski S Cuddapah K Cui TY Roh DE Schones Z Wang G Wei I Chepelev K Zhao 2007 High-resolution profiling of histone methylations in the human genome Cell 129 4 823 837 10.1016/j.cell.2007.05.009 (Pubitemid 46802390)
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.-Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
3
-
-
46249112085
-
Combinatorial patterns of histone acetylations and methylations in the human genome
-
DOI 10.1038/ng.154, PII NG154
-
Z Wang C Zang JA Rosenfeld DE Schones A Barski S Cuddapah K Cui TY Roh W Peng MQ Zhang K Zhao 2008 Combinatorial patterns of histone acetylations and methylations in the human genome Nat. Genet. 40 7 897 903 10.1038/ng.154 (Pubitemid 351913645)
-
(2008)
Nature Genetics
, vol.40
, Issue.7
, pp. 897-903
-
-
Wang, Z.1
Zang, C.2
Rosenfeld, J.A.3
Schones, D.E.4
Barski, A.5
Cuddapah, S.6
Cui, K.7
Roh, T.-Y.8
Peng, W.9
Zhang, M.Q.10
Zhao, K.11
-
4
-
-
0029150196
-
Specific Alu binding protein from human sperm chromatin prevents DNA methylation
-
10.1074/jbc.270.31.18539
-
IN Chesnokov CW Schmid 1995 Specific Alu binding protein from human sperm chromatin prevents DNA methylation J. Biol. Chem. 270 31 18539 18542 10.1074/jbc.270.31.18539
-
(1995)
J. Biol. Chem.
, vol.270
, Issue.31
, pp. 18539-18542
-
-
Chesnokov, I.N.1
Schmid, C.W.2
-
6
-
-
45149084413
-
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
-
DOI 10.1038/nature06947, PII NATURE06947
-
L Guelen L Pagie E Brasset W Meuleman MB Faza W Talhout BH Eussen A de Klein L Wessels W de Laat B van Steensel 2008 Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions Nature 453 7197 948 951 10.1038/nature06947 (Pubitemid 351832561)
-
(2008)
Nature
, vol.453
, Issue.7197
, pp. 948-951
-
-
Guelen, L.1
Pagie, L.2
Brasset, E.3
Meuleman, W.4
Faza, M.B.5
Talhout, W.6
Eussen, B.H.7
De Klein, A.8
Wessels, L.9
De Laat, W.10
Van Steensel, B.11
-
7
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
DOI 10.1126/science.1075090
-
TI Lee NJ Rinaldi F Robert DT Odom Z Bar-Joseph GK Gerber NM Hannett CT Harbison CM Thompson I Simon J Zeitlinger EG Jennings HL Murray DB Gordon B Ren JJ Wyrick JB Tagne TL Volkert E Fraenkel DK Gifford RA Young 2002 Transcriptional regulatory networks in Saccharomyces cerevisiae Science 298 5594 799 804 10.1126/science.1075090 (Pubitemid 35231527)
-
(2002)
Science
, vol.298
, Issue.5594
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
Hannett, N.M.7
Harbison, C.T.8
Thompson, C.M.9
Simon, I.10
Zeitlinger, J.11
Jennings, E.G.12
Murray, H.L.13
Benjamin Gordon, D.14
Ren, B.15
Wyrick, J.J.16
Tagne, J.-B.17
Volkert, T.L.18
Fraenkel, E.19
Gifford, D.K.20
Young, R.A.21
more..
-
8
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
DOI 10.1038/nature02800
-
CT Harbison DB Gordon TI Lee NJ Rinaldi KD Macisaac TW Danford NM Hannett JB Tagne DB Reynolds J Yoo EG Jennings J Zeitlinger DK Pokholok M Kellis PA Rolfe KT Takusagawa ES Lander DK Gifford E Fraenkel RA Young 2004 Transcriptional regulatory code of a eukaryotic genome Nature 431 7004 99 104 10.1038/nature02800 (Pubitemid 39215116)
-
(2004)
Nature
, vol.430
, Issue.7004
, pp. 99-104
-
-
Harbison, C.T.1
Gordon, D.B.2
Lee, T.I.3
Rinaldl, N.J.4
Macisaac, K.D.5
Danford, T.W.6
Hannett, N.M.7
Tagne, J.-B.8
Reynolds, D.B.9
Yoo, J.10
Jennings, E.G.11
Zeitlinger, J.12
Pokholok, D.K.13
Kellis, M.14
Rolfe, P.A.15
Takusagawa, K.T.16
Lander, E.S.17
Gilford, D.K.18
Fraenkel, E.19
Young, R.A.20
more..
-
9
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
DOI 10.1038/nature05874, PII NATURE05874
-
E Birney JA Stamatoyannopoulos A Dutta, et al. 2007 Identification and analysis of functional elements in 1% of the human genome by the encode pilot project Nature 447 7146 799 816 10.1038/nature05874 (Pubitemid 46920138)
-
(2007)
Nature
, vol.447
, Issue.7146
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
Guigo, R.4
Gingeras, T.R.5
Margulies, E.H.6
Weng, Z.7
Snyder, M.8
Dermitzakis, E.T.9
Thurman, R.E.10
Kuehn, M.S.11
Taylor, C.M.12
Neph, S.13
Koch, C.M.14
Asthana, S.15
Malhotra, A.16
Adzhubei, I.17
Greenbaum, J.A.18
Andrews, R.M.19
Flicek, P.20
Boyle, P.J.21
Cao, H.22
Carter, N.P.23
Clelland, G.K.24
Davis, S.25
Day, N.26
Dhami, P.27
Dillon, S.C.28
Dorschner, M.O.29
Fiegler, H.30
Giresi, P.G.31
Goldy, J.32
Hawrylycz, M.33
Haydock, A.34
Humbert, R.35
James, K.D.36
Johnson, B.E.37
Johnson, E.M.38
Frum, T.T.39
Rosenzweig, E.R.40
Karnani, N.41
Lee, K.42
Lefebvre, G.C.43
Navas, P.A.44
Neri, F.45
Parker, S.C.J.46
Sabo, P.J.47
Sandstrom, R.48
Shafer, A.49
Vetrie, D.50
Weaver, M.51
Wilcox, S.52
Yu, M.53
Collins, F.S.54
Dekker, J.55
Lieb, J.D.56
Tullius, T.D.57
Crawford, G.E.58
Sunyaev, S.59
Noble, W.S.60
Dunham, I.61
Denoeud, F.62
Reymond, A.63
Kapranov, P.64
Rozowsky, J.65
Zheng, D.66
Castelo, R.67
Frankish, A.68
Harrow, J.69
Ghosh, S.70
Sandelin, A.71
Hofacker, I.L.72
Baertsch, R.73
Keefe, D.74
Dike, S.75
Cheng, J.76
Hirsch, H.A.77
Sekinger, E.A.78
Lagarde, J.79
Abril, J.F.80
Shahab, A.81
Flamm, C.82
Fried, C.83
Hackermuller, J.84
Hertel, J.85
Lindemeyer, M.86
Missal, K.87
Tanzer, A.88
Washietl, S.89
Korbel, J.90
Emanuelsson, O.91
Pedersen, J.S.92
Holroyd, N.93
Taylor, R.94
Swarbreck, D.95
Matthews, N.96
Dickson, M.C.97
Thomas, D.J.98
Weirauch, M.T.99
more..
-
10
-
-
0035839057
-
The role of DNA methylation in mammalian epigenetics
-
DOI 10.1126/science.1063852
-
PA Jones D Takai 2001 The role of DNA methylation in mammalian epigenetics Science 293 5532 1068 1070 10.1126/science.1063852 (Pubitemid 32758075)
-
(2001)
Science
, vol.293
, Issue.5532
, pp. 1068-1070
-
-
Jones, P.A.1
Takai, D.2
-
11
-
-
0036144048
-
DNA methylation patterns and epigenetic memory
-
DOI 10.1101/gad.947102
-
A Bird 2002 DNA methylation patterns and epigenetic memory Genes Dev. 16 1 6 21 10.1101/gad.947102 1930462 (Pubitemid 34049633)
-
(2002)
Genes and Development
, vol.16
, Issue.1
, pp. 6-21
-
-
Bird, A.1
-
12
-
-
0025945632
-
DNA methylation and gene expression
-
A Razin H Cedar 1991 DNA methylation and gene expression Microbiol. Rev. 55 3 451 458
-
(1991)
Microbiol. Rev.
, vol.55
, Issue.3
, pp. 451-458
-
-
Razin, A.1
Cedar, H.2
-
13
-
-
0030710153
-
How does DNA methylation repress transcription?
-
DOI 10.1016/S0168-9525(97)01268-7
-
SU Kass D Pruss AP Wolffe 1997 How does DNA methylation repress transcription? Trends Genet. 13 11 444 449 10.1016/S0168-9525(97)01268-7 (Pubitemid 27479903)
-
(1997)
Trends in Genetics
, vol.13
, Issue.11
, pp. 444-449
-
-
Kass, S.U.1
Pruss, D.2
Wolffe, A.P.3
-
14
-
-
23044514626
-
Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
-
DOI 10.1038/ng1598
-
M Weber JJ Davies D Wittig EJ Oakeley M Haase WL Lam D Schubeler 2005 Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells Nat. Genet. 37 8 853 862 10.1038/ng1598 (Pubitemid 41077111)
-
(2005)
Nature Genetics
, vol.37
, Issue.8
, pp. 853-862
-
-
Weber, M.1
Davies, J.J.2
Wittig, D.3
Oakeley, E.J.4
Haase, M.5
Lam, W.L.6
Schubeler, D.7
-
15
-
-
33751505540
-
DNA methylation profiling of human chromosomes 6, 20 and 22
-
DOI 10.1038/ng1909, PII NG1909
-
F Eckhardt J Lewin R Cortese, et al. 2006 DNAmethylation profiling of human chromosomes 6, 20 and 22 Nat. Genet. 38 12 1378 1385 10.1038/ng1909 (Pubitemid 44837559)
-
(2006)
Nature Genetics
, vol.38
, Issue.12
, pp. 1378-1385
-
-
Eckhardt, F.1
Lewin, J.2
Cortese, R.3
Rakyan, V.K.4
Attwood, J.5
Burger, M.6
Burton, J.7
Cox, T.V.8
Davies, R.9
Down, T.A.10
Haefliger, C.11
Horton, R.12
Howe, K.13
Jackson, D.K.14
Kunde, J.15
Koenig, C.16
Liddle, J.17
Niblett, D.18
Otto, T.19
Pettett, R.20
Seemann, S.21
Thompson, C.22
West, T.23
Rogers, J.24
Olek, A.25
Berlin, K.26
Beck, S.27
more..
-
16
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
DOI 10.1038/35057062
-
ES Lander LW Linton B Birren, et al. 2001 Initial sequencing and analysis of the human genome Nature 409 6822 860 921 10.1038/35057062 (Pubitemid 32165345)
-
(2001)
Nature
, vol.409
, Issue.6822
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
Fitzhugh, W.10
Funke, R.11
Gage, D.12
Harris, K.13
Heaford, A.14
Howland, J.15
Kann, L.16
Lehoczky, J.17
Levine, R.18
McEwan, P.19
McKernan, K.20
Meldrim, J.21
Mesirov, J.P.22
Miranda, C.23
Morris, W.24
Naylor, J.25
Raymond, C.26
Rosetti, M.27
Santos, R.28
Sheridan, A.29
Sougnez, C.30
Stange-Thomann, N.31
Stojanovic, N.32
Subramanian, A.33
Wyman, D.34
Rogers, J.35
Sulston, J.36
Ainscough, R.37
Beck, S.38
Bentley, D.39
Burton, J.40
Clee, C.41
Carter, N.42
Coulson, A.43
Deadman, R.44
Deloukas, P.45
Dunham, A.46
Dunham, I.47
Durbin, R.48
French, L.49
Grafham, D.50
Gregory, S.51
Hubbard, T.52
Humphray, S.53
Hunt, A.54
Jones, M.55
Lloyd, C.56
McMurray, A.57
Matthews, L.58
Mercer, S.59
Milne, S.60
Mullikin, J.C.61
Mungall, A.62
Plumb, R.63
Ross, M.64
Shownkeen, R.65
Sims, S.66
Waterston, R.H.67
Wilson, R.K.68
Hillier, L.W.69
McPherson, J.D.70
Marra, M.A.71
Mardis, E.R.72
Fulton, L.A.73
Chinwalla, A.T.74
Pepin, K.H.75
Gish, W.R.76
Chissoe, S.L.77
Wendl, M.C.78
Delehaunty, K.D.79
Miner, T.L.80
Delehaunty, A.81
Kramer, J.B.82
Cook, L.L.83
Fulton, R.S.84
Johnson, D.L.85
Minx, P.J.86
Clifton, S.W.87
Hawkins, T.88
Branscomb, E.89
Predki, P.90
Richardson, P.91
Wenning, S.92
Slezak, T.93
more..
-
17
-
-
0021100628
-
Unmethylated domains in vertebrate DNA
-
10.1093/nar/11.3.647
-
DN Cooper MH Taggart AP Bird 1983 Unmethylated domains in vertebrate DNA Nucleic Acids Res. 11 3 647 658 10.1093/nar/11.3.647
-
(1983)
Nucleic Acids Res.
, vol.11
, Issue.3
, pp. 647-658
-
-
Cooper, D.N.1
Taggart, M.H.2
Bird, A.P.3
-
19
-
-
0023216891
-
CpG islands in vertebrate genomes
-
10.1016/0022-2836(87)90689-9
-
M Gardiner-Garden M Frommer 1987 CpG islands in vertebrate genomes J. Mol. Biol. 196 2 261 282 10.1016/0022-2836(87)90689-9
-
(1987)
J. Mol. Biol.
, vol.196
, Issue.2
, pp. 261-282
-
-
Gardiner-Garden, M.1
Frommer, M.2
-
22
-
-
0034912742
-
Histone acetyltransferases
-
DOI 10.1146/annurev.biochem.70.1.81
-
S Roth 2001 Y, Denu J M Allis C D. Histone acetyltransferases. Annu. Rev. Biochem. 70 81 120 10.1146/annurev.biochem.70.1.81 (Pubitemid 32662206)
-
(2001)
Annual Review of Biochemistry
, vol.70
, pp. 81-120
-
-
Roth, S.Y.1
Denu, J.M.2
Allis, C.D.3
-
23
-
-
0035962651
-
An embarrassment of niches: The many covalent modifications of histones in transcriptional regulation
-
DOI 10.1038/sj.onc.1204324
-
SL Berger 2001 An embarrassment of niches: The many covalent modifications of histones in transcriptional regulation Oncogene 20 24 3007 3013 10.1038/sj.onc.1204324 (Pubitemid 32553554)
-
(2001)
Oncogene
, vol.20
, pp. 3007-3013
-
-
Berger, S.L.1
-
24
-
-
0035839136
-
Translating the histone code
-
DOI 10.1126/science.1063127
-
T Jenuwein CD Allis 2001 Translating the histone code Science 293 5532 1074 1080 10.1126/science.1063127 (Pubitemid 32758077)
-
(2001)
Science
, vol.293
, Issue.5532
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
25
-
-
0036386359
-
Histone acetyltransferases and deacetylases in the control of cell proliferation and differentiation
-
Harel-Bellan A.
-
H Lehrmann L Pritchard 2002 L Harel-Bellan A. Histone acetyltransferases and deacetylases in the control of cell proliferation and differentiation. Adv. Cancer Res. 86 41 65
-
(2002)
Adv. Cancer Res.
, vol.86
, pp. 41-65
-
-
Lehrmann, H.1
Pritchard, L.2
-
26
-
-
0142062911
-
MLL-rearranged leukemias: Insights from gene expression profiling
-
DOI 10.1016/S0037-1963(03)00196-3
-
SA Armstrong TR Golub SJ Korsmeyer 2003 Mll-rearranged leukemias: Insights from gene expression profiling Semin Hematol 40 4 268 273 10.1016/S0037-1963(03)00196-3 (Pubitemid 37296776)
-
(2003)
Seminars in Hematology
, vol.40
, Issue.4
, pp. 268-273
-
-
Armstrong, S.A.1
Golub, T.R.2
Korsmeyer, S.J.3
-
27
-
-
34250213859
-
DNA methylation as a therapeutic target in cancer
-
DOI 10.1158/1078-0432.CCR-06-2076
-
JP Issa 2007 DNA methylation as a therapeutic target in cancer Clin. Cancer Res. 13 6 1634 1637 10.1158/1078-0432.CCR-06-2076 (Pubitemid 46952927)
-
(2007)
Clinical Cancer Research
, vol.13
, Issue.6
, pp. 1634-1637
-
-
Issa, J.-P.J.1
-
28
-
-
70450217879
-
Human DNA methylomes at base resolution show widespread epigenomic differences
-
10.1038/nature08514
-
R Lister M Pelizzola RH Dowen RD Hawkins G Hon J Tonti-Filippini JR Nery L Lee Z Ye QM Ngo L Edsall J Antosiewicz-Bourget R Stewart V Ruotti AH Millar JA Thomson B Ren JR Ecker 2009 Human DNA methylomes at base resolution show widespread epigenomic differences Nature 462 7271 315 322 10.1038/nature08514
-
(2009)
Nature
, vol.462
, Issue.7271
, pp. 315-322
-
-
Lister, R.1
Pelizzola, M.2
Dowen, R.H.3
Hawkins, R.D.4
Hon, G.5
Tonti-Filippini, J.6
Nery, J.R.7
Lee, L.8
Ye, Z.9
Ngo, Q.M.10
Edsall, L.11
Antosiewicz-Bourget, J.12
Stewart, R.13
Ruotti, V.14
Millar, A.H.15
Thomson, J.A.16
Ren, B.17
Ecker, J.R.18
-
29
-
-
37249026814
-
Genome-wide analysis of DNA methylation patterns
-
DOI 10.1242/dev.001131
-
D Zilberman S Henikoff 2007 Genome-wide analysis of DNA methylation patterns Development 134 22 3959 3965 10.1242/dev.001131 (Pubitemid 350269413)
-
(2007)
Development
, vol.134
, Issue.22
, pp. 3959-3965
-
-
Zilberman, D.1
Henikoff, S.2
-
30
-
-
53849146020
-
Model-based analysis of chIP-seq (MACS)
-
10.1186/gb-2008-9-9-r137
-
Y Zhang T Liu CA Meyer J Eeckhoute DS Johnson BE Bernstein C Nussbaum RM Myers M Brown W Li XS Liu 2008 Model-based analysis of chIP-seq (MACS) Genome. Biol. 9 9 R137 10.1186/gb-2008-9-9-r137
-
(2008)
Genome. Biol.
, vol.9
, Issue.9
, pp. 137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nussbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
Liu, X.S.11
-
31
-
-
55749094855
-
An integrated software system for analyzing chIP-chip and chIP-seq data
-
10.1038/nbt.1505
-
H Ji H Jiang W Ma DS Johnson RM Myers WH Wong 2008 An integrated software system for analyzing chIP-chip and chIP-seq data Nat. Biotechnol. 26 11 1293 1300 10.1038/nbt.1505
-
(2008)
Nat. Biotechnol.
, vol.26
, Issue.11
, pp. 1293-1300
-
-
Ji, H.1
Jiang, H.2
Ma, W.3
Johnson, D.S.4
Myers, R.M.5
Wong, W.H.6
-
32
-
-
60149112271
-
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls
-
10.1038/nbt.1518
-
J Rozowsky G Euskirchen RK Auerbach ZD Zhang T Gibson R Bjornson N Carriero M Snyder MB Gerstein 2009 PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls Nat. Biotechnol. 27 1 66 75 10.1038/nbt.1518
-
(2009)
Nat. Biotechnol.
, vol.27
, Issue.1
, pp. 66-75
-
-
Rozowsky, J.1
Euskirchen, G.2
Auerbach, R.K.3
Zhang, Z.D.4
Gibson, T.5
Bjornson, R.6
Carriero, N.7
Snyder, M.8
Gerstein, M.B.9
-
34
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
DOI 10.1038/ng1966, PII NG1966
-
ND Heintzman RK Stuart G Hon Y Fu CW Ching RD Hawkins LO Barrera S Van Calcar C Qu KA Ching W Wang Z Weng RD Green GE Crawford B Ren 2007 Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome Nat. Genet. 39 3 311 318 10.1038/ng1966 (Pubitemid 46328487)
-
(2007)
Nature Genetics
, vol.39
, Issue.3
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
Hawkins, R.D.6
Barrera, L.O.7
Van Calcar, S.8
Qu, C.9
Ching, K.A.10
Wang, W.11
Weng, Z.12
Green, R.D.13
Crawford, G.E.14
Ren, B.15
-
35
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
10.1038/nature07829
-
ND Heintzman GC Hon RD Hawkins P Kheradpour A Stark LF Harp Z Ye LK Lee RK Stuart CW Ching KA Ching JE Antosiewicz-Bourget H Liu X Zhang RD Green VV Lobanenkov R Stewart JA Thomson GE Crawford M Kellis B Ren 2009 Histone modifications at human enhancers reflect global cell-type-specific gene expression Nature 459 7243 108 112 10.1038/nature07829
-
(2009)
Nature
, vol.459
, Issue.7243
, pp. 108-112
-
-
Heintzman, N.D.1
Hon, G.C.2
Hawkins, R.D.3
Kheradpour, P.4
Stark, A.5
Harp, L.F.6
Ye, Z.7
Lee, L.K.8
Stuart, R.K.9
Ching, C.W.10
Ching, K.A.11
Antosiewicz-Bourget, J.E.12
Liu, H.13
Zhang, X.14
Green, R.D.15
Lobanenkov, V.V.16
Stewart, R.17
Thomson, J.A.18
Crawford, G.E.19
Kellis, M.20
Ren, B.21
more..
-
36
-
-
60149091656
-
ChIP-seq accurately predicts tissue-specific activity of enhancers
-
10.1038/nature07730
-
A Visel MJ Blow Z Li T Zhang JA Akiyama A Holt I Plajzer-Frick M Shoukry C Wright F Chen V Afzal B Ren EM Rubin LA Pennacchio 2009 ChIP-seq accurately predicts tissue-specific activity of enhancers Nature 457 7231 854 858 10.1038/nature07730
-
(2009)
Nature
, vol.457
, Issue.7231
, pp. 854-858
-
-
Visel, A.1
Blow, M.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
Afzal, V.11
Ren, B.12
Rubin, E.M.13
Pennacchio, L.A.14
-
37
-
-
48949099045
-
Inferring causal relationships among different histone modifications and gene expression
-
10.1101/gr.073080.107
-
H Yu S Zhu B Zhou H Xue JD Han 2008 Inferring causal relationships among different histone modifications and gene expression Genome Res. 18 8 1314 1324 10.1101/gr.073080.107
-
(2008)
Genome Res.
, vol.18
, Issue.8
, pp. 1314-1324
-
-
Yu, H.1
Zhu, S.2
Zhou, B.3
Xue, H.4
Han, J.D.5
-
38
-
-
15744401773
-
Eukaryotic cytosine methyltransferases
-
DOI 10.1146/annurev.biochem.74.010904.153721
-
MG Goll TH Bestor 2005 Eukaryotic cytosine methyltransferases. nnu. Rev. Biochem. 74 481 514 10.1146/annurev.biochem.74.010904.153721 (Pubitemid 40995515)
-
(2005)
Annual Review of Biochemistry
, vol.74
, pp. 481-514
-
-
Goll, M.G.1
Bestor, T.H.2
-
39
-
-
0019506454
-
The somatic replication of DNA methylation
-
10.1016/0092-8674(81)90498-0
-
M Wigler D Levy M Perucho 1981 The somatic replication of DNA methylation Cell 24 1 33 40 10.1016/0092-8674(81)90498-0
-
(1981)
Cell
, vol.24
, Issue.1
, pp. 33-40
-
-
Wigler, M.1
Levy, D.2
Perucho, M.3
-
40
-
-
34249080596
-
Theoretical analysis of epigenetic cell memory by nucleosome modification
-
DOI 10.1016/j.cell.2007.02.053, PII S0092867407004588
-
IB Dodd MA Micheelsen K Sneppen G Thon 2007 Theoretical analysis of epigenetic cell memory by nucleosome modification Cell 129 4 813 822 10.1016/j.cell.2007.02.053 (Pubitemid 46802381)
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 813-822
-
-
Dodd, I.B.1
Micheelsen, M.A.2
Sneppen, K.3
Thon, G.4
-
41
-
-
75749152362
-
Computational cellular dynamics based on the chemical master equation: A challenge for understanding complexity
-
10.1007/s11390-010-9312-6
-
J Liang H Qian 2010 Computational cellular dynamics based on the chemical master equation: A challenge for understanding complexity J. Comput. Sci. & Technol. 25 1 154 168 10.1007/s11390-010-9312-6
-
(2010)
J. Comput. Sci. & Technol.
, vol.25
, Issue.1
, pp. 154-168
-
-
Liang, J.1
Qian, H.2
-
42
-
-
43149098062
-
Comprehensive high-throughput arrays for relative methylation (CHARM)
-
DOI 10.1101/gr.7301508
-
RA Irizarry C Ladd-Acosta B Carvalho H Wu SA Brandenburg JA Jeddeloh B Wen AP Feinberg 2008 Comprehensive high-throughput arrays for relative methylation (CHARM) Genome. Res. 18 5 780 790 10.1101/gr.7301508 (Pubitemid 351645068)
-
(2008)
Genome Research
, vol.18
, Issue.5
, pp. 780-790
-
-
Irizarry, R.A.1
Ladd-Acosta, C.2
Carvalho, B.3
Wu, H.4
Brandenburg, S.A.5
Jeddeloh, J.A.6
Wen, B.7
Feinberg, A.P.8
-
43
-
-
59149084538
-
The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
-
10.1038/ng.298
-
RA Irizarry C Ladd-Acosta B Wen Z Wu C Montano P Onyango H Cui K Gabo M Rongione M Webster H Ji JB Potash S Sabunciyan AP Feinberg 2009 The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores Nat. Genet. 41 2 178 186 10.1038/ng.298
-
(2009)
Nat. Genet.
, vol.41
, Issue.2
, pp. 178-186
-
-
Irizarry, R.A.1
Ladd-Acosta, C.2
Wen, B.3
Wu, Z.4
Montano, C.5
Onyango, P.6
Cui, H.7
Gabo, K.8
Rongione, M.9
Webster, M.10
Ji, H.11
Potash, J.B.12
Sabunciyan, S.13
Feinberg, A.P.14
-
44
-
-
70649095120
-
Differential methylation of tissueand cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts
-
Nov. 1, 2009, PubMed PMID: 19881528. (Epub ahead of print)
-
Doi A, Park IH, Wen B, Murakami P, Aryee MJ, Irizarry R, Herb B, Ladd-Acosta C, Rho J, Loewer S, Miller J, Schlaeger T, Daley GQ, Feinberg AP. Differential methylation of tissueand cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts. Nat. Genet., Nov. 1, 2009, PubMed PMID: 19881528. (Epub ahead of print)
-
Nat. Genet.
-
-
Doi, A.1
Park, I.H.2
Wen, B.3
Murakami, P.4
Aryee, M.J.5
Irizarry, R.6
Herb, B.7
Ladd-Acosta, C.8
Rho, J.9
Loewer, S.10
Miller, J.11
Schlaeger, T.12
Daley, G.Q.13
Feinberg, A.P.14
-
45
-
-
33846576622
-
Epigenetic stem cell signature in cancer
-
DOI 10.1038/ng1941, PII NG1941
-
M Widschwendter H Fiegl D Egle E Mueller-Holzner G Spizzo C Marth DJ Weisenberger M Campan J Young I Jacobs PW Laird 2007 Epigenetic stem cell signature in cancer Nat. Genet. 39 2 157 158 10.1038/ng1941 (Pubitemid 46184343)
-
(2007)
Nature Genetics
, vol.39
, Issue.2
, pp. 157-158
-
-
Widschwendter, M.1
Fiegl, H.2
Egle, D.3
Mueller-Holzner, E.4
Spizzo, G.5
Marth, C.6
Weisenberger, D.J.7
Campan, M.8
Young, J.9
Jacobs, I.10
Laird, P.W.11
-
46
-
-
33846649587
-
Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer
-
DOI 10.1038/ng1950, PII NG1950
-
Y Schlesinger R Straussman I Keshet S Farkash M Hecht J Zimmerman E Eden Z Yakhini E Ben-Shushan BE Reubinoff Y Bergman I Simon H Cedar 2007 Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer Nat. Genet. 39 2 232 236 10.1038/ng1950 (Pubitemid 46184355)
-
(2007)
Nature Genetics
, vol.39
, Issue.2
, pp. 232-236
-
-
Schlesinger, Y.1
Straussman, R.2
Keshet, I.3
Farkash, S.4
Hecht, M.5
Zimmerman, J.6
Eden, E.7
Yakhini, Z.8
Ben-Shushan, E.9
Reubinoff, B.E.10
Bergman, Y.11
Simon, I.12
Cedar, H.13
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