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Volumn 270, Issue , 2010, Pages 163-174

An optimization algorithm based on harmony search for RNA secondary structure prediction

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EID: 75749098465     PISSN: 1860949X     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-3-642-04317-8_14     Document Type: Article
Times cited : (17)

References (26)
  • 1
    • 0037062949 scopus 로고    scopus 로고
    • The chemical repertoire of natural ribozymes
    • Doudna, J.A., Cech, T.R.: The chemical repertoire of natural ribozymes. Nature 418, 222-228 (2002)
    • (2002) Nature , vol.418 , pp. 222-228
    • Doudna, J.A.1    Cech, T.R.2
  • 6
    • 13344279384 scopus 로고    scopus 로고
    • Evaluation of the suitability of freeenergy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction
    • Doshi, K.J., Cannone, J.J., Cobaugh, C.W., et al.: Evaluation of the suitability of freeenergy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction. BMC Bioinformatics 5, 1471-2105 (2004)
    • (2004) BMC Bioinformatics , vol.5 , pp. 1471-2105
    • Doshi, K.J.1    Cannone, J.J.2    Cobaugh, C.W.3
  • 8
    • 0015216137 scopus 로고
    • Estimation of secondary structure in ribonucleic acids
    • Tinoco, I., Uhlenbeck, O.C., Levine, M.D.: Estimation of secondary structure in ribonucleic acids. Nature 230, 362-367 (1971)
    • (1971) Nature , vol.230 , pp. 362-367
    • Tinoco, I.1    Uhlenbeck, O.C.2    Levine, M.D.3
  • 9
    • 33746320475 scopus 로고    scopus 로고
    • Revolutions in RNA secondary structure prediction
    • Mathews, D.H.: Revolutions in RNA secondary structure prediction. Journal of Molecular Biology 359, 526-532 (2006)
    • (2006) Journal of Molecular Biology , vol.359 , pp. 526-532
    • Mathews, D.H.1
  • 10
    • 0019876473 scopus 로고
    • Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
    • Zuker, M., Stiegler, P.: Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucl. Acids. Res. 9, 133-148 (1981)
    • (1981) Nucl. Acids. Res. , vol.9 , pp. 133-148
    • Zuker, M.1    Stiegler, P.2
  • 11
    • 0028249154 scopus 로고
    • Prediction of RNA secondary structure by energy minimization
    • Annette, M.G., Hugh, G.G. (eds.) Humana Press
    • Zuker, M.: Prediction of RNA Secondary Structure by Energy Minimization. In: Annette, M.G., Hugh, G.G. (eds.) Computer Analysis of Sequence Data, pp. 267-294. Humana Press (1994)
    • (1994) Computer Analysis of Sequence Data , pp. 267-294
    • Zuker, M.1
  • 12
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M.: Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Research 31, 3406-3415 (2003)
    • (2003) Nucleic Acids Research , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 13
    • 34249772381 scopus 로고
    • Fast folding and comparison of RNA secondary structures (The Vienna RNA Package)
    • Hofacker, I.L., Fontana, W., Stadler, P.F., et al.: Fast folding and comparison of RNA secondary structures (The Vienna RNA Package). Monatshefte f. Chemie 125, 167-188 (1994)
    • (1994) Monatshefte F. Chemie , vol.125 , pp. 167-188
    • Hofacker, I.L.1    Fontana, W.2    Stadler, P.F.3
  • 14
    • 33645821671 scopus 로고    scopus 로고
    • Comparison of P-RnaPredict and mfold algorithms for RNA secondary structure prediction
    • Wiese, K.C., Hendriks, A.: Comparison of P-RnaPredict and mfold algorithms for RNA secondary structure prediction. Bioinformatics 22, 934-942 (2006)
    • (2006) Bioinformatics , vol.22 , pp. 934-942
    • Wiese, K.C.1    Hendriks, A.2
  • 16
    • 79955288861 scopus 로고    scopus 로고
    • The signifcance of thermodynamic models in the accuracy improvement of RNA secondary structure prediction using permutation-based simulated annealing
    • Singapore
    • Tsang, H.H., Wiese, K.C.: The signifcance of thermodynamic models in the accuracy improvement of RNA secondary structure prediction using permutation-based simulated annealing. In: Proceedings of the IEEE Congress on Evolutionary Computation, Singapore, pp. 3879-3885 (2007)
    • (2007) Proceedings of the IEEE Congress on Evolutionary Computation , pp. 3879-3885
    • Tsang, H.H.1    Wiese, K.C.2
  • 17
    • 34548781416 scopus 로고    scopus 로고
    • A particle swarm optimizer for finding minimum free energy RNA secondary structures
    • SIS 2007
    • Geis, M., Middendorf, M.: A Particle Swarm Optimizer for Finding Minimum Free Energy RNA Secondary Structures. In: Proceedings of IEEE Swarm Intelligence Symposium, SIS 2007 (2007)
    • (2007) Proceedings of IEEE Swarm Intelligence Symposium
    • Geis, M.1    Middendorf, M.2
  • 18
    • 0034974417 scopus 로고    scopus 로고
    • A new heuristic optimization algorithm: Harmony search
    • Geem, Z.W., Kim, J.H., Loganathan, G.V.: A New Heuristic Optimization Algorithm: Harmony Search. Simulation 76, 60-68 (2001)
    • (2001) Simulation , vol.76 , pp. 60-68
    • Geem, Z.W.1    Kim, J.H.2    Loganathan, G.V.3
  • 19
    • 34248141625 scopus 로고    scopus 로고
    • An improved harmony search algorithm for solving optimization problems
    • Mahdavi, M., Fesanghary, M., Damangir, E.: An improved harmony search algorithm for solving optimization problems. Applied Mathematics and Computation 188, 1567-1579 (2007)
    • (2007) Applied Mathematics and Computation , vol.188 , pp. 1567-1579
    • Mahdavi, M.1    Fesanghary, M.2    Damangir, E.3
  • 20
    • 20444466485 scopus 로고    scopus 로고
    • A new meta-heuristic algorithm for continuous engineering optimization: Harmony search theory and practice
    • Lee, K.S., Geem, Z.W.: A new meta-heuristic algorithm for continuous engineering optimization: harmony search theory and practice. Computer Methods in Applied Mechanics and Engineering 194, 3902-3933 (2005)
    • (2005) Computer Methods in Applied Mechanics and Engineering , vol.194 , pp. 3902-3933
    • Lee, K.S.1    Geem, Z.W.2
  • 21
    • 77950962810 scopus 로고    scopus 로고
    • Harmony search as a metaheuristic algorithm
    • Geem, Z.W. (ed.) Springer, Heidelberg
    • Yang, X.-S.: Harmony Search as a Metaheuristic Algorithm. In: Geem, Z.W. (ed.) Music- Inspired Harmony Search Algorithm. Springer, Heidelberg (2009)
    • (2009) Music- Inspired Harmony Search Algorithm
    • Yang, X.-S.1
  • 24
    • 84871851455 scopus 로고    scopus 로고
    • Finding the minimum free energy RNA Secondary Structures using Harmony Search Algorithm
    • Singapore
    • Mohsen, A.M., Khader, A.T., Ramachandram, D., et al.: Finding the minimum free energy RNA Secondary Structures using Harmony Search Algorithm. In: WCSET 2009, Singapore (2009)
    • (2009) WCSET 2009
    • Mohsen, A.M.1    Khader, A.T.2    Ramachandram, D.3
  • 25
    • 2942571539 scopus 로고    scopus 로고
    • The comparative rna web (crw) site: An online database of comparative sequence and structure information for ribosomal, intron, and other rnas
    • Cannone, J.J., Subramanian, S., Schnare, M.N., et al.: The comparative rna web (crw) site: an online database of comparative sequence and structure information for ribosomal, intron, and other rnas. BMC Bioinformatics 3, 169-172 (2002)
    • (2002) BMC Bioinformatics , vol.3 , pp. 169-172
    • Cannone, J.J.1    Subramanian, S.2    Schnare, M.N.3
  • 26
    • 77951140500 scopus 로고    scopus 로고
    • Comparison of HSRNAFold and RNAFold algorithms for RNA secondary structure prediction
    • Singapore accepted
    • Mohsen, A.M., Khader, A.T., Ramachandram, D.: Comparison of HSRNAFold and RNAFold algorithms for RNA secondary structure prediction. In: TENCON 2009, Singapore (accepted, 2009)
    • (2009) TENCON 2009
    • Mohsen, A.M.1    Khader, A.T.2    Ramachandram, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.