-
1
-
-
0034522921
-
RNA Secondary Structure: Physical and Computational Aspects
-
P.G. Higgs, "RNA Secondary Structure: Physical and Computational Aspects," Quarterly Rev. of Biophysics, vol. 33, pp. 199-253, 2000.
-
(2000)
Quarterly Rev. of Biophysics
, vol.33
, pp. 199-253
-
-
Higgs, P.G.1
-
2
-
-
0345407811
-
A Permutation Based Genetic Algorithm for RNA Secondary Structure Prediction
-
Soft Computing Systems, A. Abraham, J.R. del Solar, and M. Koppen, eds, chapter 4, pp, IOS Press
-
K.C. Wiese and E. Glen, "A Permutation Based Genetic Algorithm for RNA Secondary Structure Prediction," Soft Computing Systems, series Frontiers in Artificial Intelligence and Applications, A. Abraham, J.R. del Solar, and M. Koppen, eds., vol. 87, chapter 4, pp. 173-182, IOS Press, 2002.
-
(2002)
series Frontiers in Artificial Intelligence and Applications
, vol.87
, pp. 173-182
-
-
Wiese, K.C.1
Glen, E.2
-
3
-
-
0345293275
-
A Permutation-Based Genetic Algorithm for the RNA Folding Problem: A Critical Look at Selection Strategies, Crossover Operators and Representation Issues
-
K.C. Wiese and E. Glen, "A Permutation-Based Genetic Algorithm for the RNA Folding Problem: A Critical Look at Selection Strategies, Crossover Operators and Representation Issues," BioSystems, special issue on computational intelligence in bioinformatics, vol. 72, pp. 29-41, 2003.
-
(2003)
BioSystems
, vol.72
, pp. 29-41
-
-
Wiese, K.C.1
Glen, E.2
-
4
-
-
4344665708
-
Permutation Based RNA Secondary Structure Prediction via a Genetic Algorithm
-
Dec
-
K.C. Wiese, A. Deschenes, and E. Glen, "Permutation Based RNA Secondary Structure Prediction via a Genetic Algorithm," Proc. 2003 Congress Evolutionary Computation (CEC '03), pp. 335-342, Dec. 2003.
-
(2003)
Proc. 2003 Congress Evolutionary Computation (CEC '03)
, pp. 335-342
-
-
Wiese, K.C.1
Deschenes, A.2
Glen, E.3
-
5
-
-
0033054042
-
RNA Secondary Structure Prediction Based on Free Energy and Phylogenetic Analysis
-
V. Juan and C. Wilson, "RNA Secondary Structure Prediction Based on Free Energy and Phylogenetic Analysis," J. Molecular Biology, vol. 289, pp. 935-947, 1999.
-
(1999)
J. Molecular Biology
, vol.289
, pp. 935-947
-
-
Juan, V.1
Wilson, C.2
-
6
-
-
0347724163
-
An Iterated Loop Matching Approach to the Prediction of RNA Secondary Structures with Pseudoknots
-
J. Ruan, G.D. Stormo, and W. Zhang, "An Iterated Loop Matching Approach to the Prediction of RNA Secondary Structures with Pseudoknots," Bioinformatics, vol. 20, no. 1, pp. 58-66, 2004.
-
(2004)
Bioinformatics
, vol.20
, Issue.1
, pp. 58-66
-
-
Ruan, J.1
Stormo, G.D.2
Zhang, W.3
-
7
-
-
0032796501
-
RNA Secondary Structure Prediction Using Stochastic Context-Free Grammars and Evolutionary History
-
B. Knudsen and J.J. Hein, "RNA Secondary Structure Prediction Using Stochastic Context-Free Grammars and Evolutionary History," Bioinformatics, vol. 15, no. 6, pp. 446-454, 1999.
-
(1999)
Bioinformatics
, vol.15
, Issue.6
, pp. 446-454
-
-
Knudsen, B.1
Hein, J.J.2
-
9
-
-
0028547954
-
A Massively-Parallel Genetic Algorithm for RNA Secondary Structure Prediction
-
B.A. Shapiro and J. Navetta, "A Massively-Parallel Genetic Algorithm for RNA Secondary Structure Prediction," J. Supercomputing, vol. 8, pp. 195-207, 1994.
-
(1994)
J. Supercomputing
, vol.8
, pp. 195-207
-
-
Shapiro, B.A.1
Navetta, J.2
-
10
-
-
0029966818
-
An Annealing Mutation Operator in the Genetic Algorithms for RNA Folding
-
B.A. Shapiro and J.C. Wu, "An Annealing Mutation Operator in the Genetic Algorithms for RNA Folding," Computer Applications in the Biosciences, vol. 12, no. 3, pp. 171-180, 1996.
-
(1996)
Computer Applications in the Biosciences
, vol.12
, Issue.3
, pp. 171-180
-
-
Shapiro, B.A.1
Wu, J.C.2
-
11
-
-
0029025720
-
An APL-Programmed Genetic Algorithm for the Prediction of RNA Secondary Structure
-
F.H.D. van Batenburg, A.P. Gultyaev, and C.W.A. Pleij, "An APL-Programmed Genetic Algorithm for the Prediction of RNA Secondary Structure," J. Theoretical Biology, vol. 174, pp. 269-280, 1995.
-
(1995)
J. Theoretical Biology
, vol.174
, pp. 269-280
-
-
van Batenburg, F.H.D.1
Gultyaev, A.P.2
Pleij, C.W.A.3
-
12
-
-
0029061125
-
The Computer-Simulation of RNA Folding Pathways Using a Genetic Algorithm
-
A.P. Gultyaev, F.H.D. van Batenburg, and C.W.A. Pleij, "The Computer-Simulation of RNA Folding Pathways Using a Genetic Algorithm," J. Molecular Biology, vol. 250, pp. 37-51, 1995.
-
(1995)
J. Molecular Biology
, vol.250
, pp. 37-51
-
-
Gultyaev, A.P.1
van Batenburg, F.H.D.2
Pleij, C.W.A.3
-
13
-
-
0029040124
-
A Genetic Algorithm to Search for Optimal and Suboptimal RNA Secondary Structures
-
G. Benedetti and S. Morosetti, "A Genetic Algorithm to Search for Optimal and Suboptimal RNA Secondary Structures," Biophysical Chemistry, vol. 55, pp. 253-259, 1995.
-
(1995)
Biophysical Chemistry
, vol.55
, pp. 253-259
-
-
Benedetti, G.1
Morosetti, S.2
-
14
-
-
38949130586
-
Proc. ACM SIGKDD Workshop Data Mining in Bioinformatics (BIOKDD '01)
-
B.A. Shapiro, D. Bengali, and W. Kasprzak, "Determination of RNA Folding Pathway Functional Intermediates Using a Massively Parallel Genetic Algorithm," Proc. ACM SIGKDD Workshop Data Mining in Bioinformatics (BIOKDD '01), p. 1, citeseer.ist.psu.edu/shapiro01determination.html, 2001.
-
(2001)
, pp. 1
-
-
Shapiro, B.A.1
Bengali, D.2
Kasprzak, W.3
-
15
-
-
0035823067
-
RNA Folding Pathway Functional Intermediates: Their Prediction and Analysis
-
B.A. Shapiro, D. Bengali, W. Kasprzak, and J.C. Wu, "RNA Folding Pathway Functional Intermediates: Their Prediction and Analysis," J. Molecular Biology, vol. 312, pp. 27-44, 2001.
-
(2001)
J. Molecular Biology
, vol.312
, pp. 27-44
-
-
Shapiro, B.A.1
Bengali, D.2
Kasprzak, W.3
Wu, J.C.4
-
16
-
-
0034651542
-
Prediction of Common Secondary Structures of RNAs: A Genetic Algorithm Approach
-
J.H. Chen, S.Y. Le, and J.V. Maizel, "Prediction of Common Secondary Structures of RNAs: A Genetic Algorithm Approach," Nucleic Acids Research, vol. 28, pp. 991-999, 2000.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 991-999
-
-
Chen, J.H.1
Le, S.Y.2
Maizel, J.V.3
-
17
-
-
0030976558
-
Secondary Structure Computer Prediction of the Poliovirus 5' Non-Coding Region Is Improved by a Genetic Algorithm
-
K.M. Currey and B.A. Shapiro, "Secondary Structure Computer Prediction of the Poliovirus 5' Non-Coding Region Is Improved by a Genetic Algorithm," Computer Applications in the Biosciences, vol. 13, no. 1, pp. 1-12, 1997.
-
(1997)
Computer Applications in the Biosciences
, vol.13
, Issue.1
, pp. 1-12
-
-
Currey, K.M.1
Shapiro, B.A.2
-
19
-
-
0036417007
-
A Fast Genetic Algorithm for RNA Secondary Structure Analysis
-
I.I. Titov, D.G. Vorobiev, V.A. Ivanisenko, and N.A. Kolchanov, "A Fast Genetic Algorithm for RNA Secondary Structure Analysis," Russian Chemical Bull. vol. 51, no. 7, pp. 1135-1144, 2002.
-
(2002)
Russian Chemical Bull
, vol.51
, Issue.7
, pp. 1135-1144
-
-
Titov, I.I.1
Vorobiev, D.G.2
Ivanisenko, V.A.3
Kolchanov, N.A.4
-
20
-
-
0036920495
-
Discovery of RNA Structural Elements Using Evolutionary Computation
-
G.B. Fogel, V.W. Porto, D.G. Weekes, D.B. Fogel, R.H. Griffey, J.A. McNeil, E. Lesnik, D.J. Ecker, and R. Sampath, "Discovery of RNA Structural Elements Using Evolutionary Computation," Nucleic Acids Research, vol. 30, no. 23, pp. 5310-5317, 2002.
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.23
, pp. 5310-5317
-
-
Fogel, G.B.1
Porto, V.W.2
Weekes, D.G.3
Fogel, D.B.4
Griffey, R.H.5
McNeil, J.A.6
Lesnik, E.7
Ecker, D.J.8
Sampath, R.9
-
21
-
-
0035479118
-
Keep-Best Reproduction: A Local Family Competition Selection Strategy and the Environment It Flourishes In
-
K. Wiese and S.D. Goodwin, "Keep-Best Reproduction: A Local Family Competition Selection Strategy and the Environment It Flourishes In," Constraints, vol. 6, no. 4, pp. 399-422, 2001.
-
(2001)
Constraints
, vol.6
, Issue.4
, pp. 399-422
-
-
Wiese, K.1
Goodwin, S.D.2
-
22
-
-
4344701951
-
Using Stacking-Energies (INN and INN-HB) for Improving the Accuracy of RNA Secondary Structure Prediction with an Evolutionary Algorithm - A Comparison to Known Structures
-
June
-
A. Deschenes and K.C. Wiese, "Using Stacking-Energies (INN and INN-HB) for Improving the Accuracy of RNA Secondary Structure Prediction with an Evolutionary Algorithm - A Comparison to Known Structures," Proc. 2004 IEEE Congress Evolutionary Computation, vol. 1, pp. 598-606, June 2004.
-
(2004)
Proc. 2004 IEEE Congress Evolutionary Computation
, vol.1
, pp. 598-606
-
-
Deschenes, A.1
Wiese, K.C.2
-
23
-
-
17044411198
-
Comparison of Dynamic Programming and Evolutionary Algorithms for RNA Secondary Structure Prediction
-
Oct
-
A. Deschenes, K.C. Wiese, and J. Poonian, "Comparison of Dynamic Programming and Evolutionary Algorithms for RNA Secondary Structure Prediction," Proc. 2004 IEEE Symp. Computational Intelligence in Bioinformatics and Computational Biology (CIBCB '04), pp. 214-222, Oct. 2004.
-
(2004)
Proc. 2004 IEEE Symp. Computational Intelligence in Bioinformatics and Computational Biology (CIBCB '04)
, pp. 214-222
-
-
Deschenes, A.1
Wiese, K.C.2
Poonian, J.3
-
24
-
-
33645821671
-
Comparison of P-RnaPredic and mfold-Algorithms for RNA Secondary Structure Prediction
-
K.C. Wiese and A. Hendriks, "Comparison of P-RnaPredic and mfold-Algorithms for RNA Secondary Structure Prediction," Bioinformatics, vol. 22, no. 8, pp. 934-942, 2006.
-
(2006)
Bioinformatics
, vol.22
, Issue.8
, pp. 934-942
-
-
Wiese, K.C.1
Hendriks, A.2
-
25
-
-
33746320475
-
Revolutions in RNA Secondary Structure Prediction
-
D.H. Mathews, "Revolutions in RNA Secondary Structure Prediction," J. Molecular Biology, vol. 359, pp. 526-532, 2006.
-
(2006)
J. Molecular Biology
, vol.359
, pp. 526-532
-
-
Mathews, D.H.1
-
26
-
-
0346888665
-
A Statistical Sampling Algorithm for RNA Secondary Structure Prediction
-
Y. Ding and C.E. Lawrence, "A Statistical Sampling Algorithm for RNA Secondary Structure Prediction," Nucleic Acids Research, vol. 31, no. 24, pp. 7280-7301, 2003.
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.24
, pp. 7280-7301
-
-
Ding, Y.1
Lawrence, C.E.2
-
27
-
-
33744524010
-
Beyond Mfold: Recent Advances in RNA Bioinformatics
-
J. Reeder, M. Höchsmann, M. Rehmsmeier, B. Voss, and R. Giegerich, "Beyond Mfold: Recent Advances in RNA Bioinformatics," J. Biotechnology, vol. 124, pp. 41-55, 2006.
-
(2006)
J. Biotechnology
, vol.124
, pp. 41-55
-
-
Reeder, J.1
Höchsmann, M.2
Rehmsmeier, M.3
Voss, B.4
Giegerich, R.5
-
28
-
-
0002213113
-
Algorithms for Loop Matchings
-
R. Nussinov, G. Pieczenik, J.R. Griggs, and D.J. Kleitman, "Algorithms for Loop Matchings," SIAM J. Applied Math., vol.35, pp. 68-82, 1978.
-
(1978)
SIAM J. Applied Math
, vol.35
, pp. 68-82
-
-
Nussinov, R.1
Pieczenik, G.2
Griggs, J.R.3
Kleitman, D.J.4
-
29
-
-
0042121256
-
Mfold Web Server for Nucleic Acid Folding and Hybridization Prediction
-
M. Zuker, "Mfold Web Server for Nucleic Acid Folding and Hybridization Prediction," Nucleic Acids Research, vol. 31, no. 13, pp. 3406-3415, 2003.
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3406-3415
-
-
Zuker, M.1
-
30
-
-
0019876473
-
Optimal Computer Folding of Large RNA Sequences Using Thermodynamics and Auxiliary Information
-
M. Zuker and P. Stiegler, "Optimal Computer Folding of Large RNA Sequences Using Thermodynamics and Auxiliary Information," Nucleic Acids Research, vol. 9, pp. 133-148, 1981.
-
(1981)
Nucleic Acids Research
, vol.9
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
-
31
-
-
0024477261
-
On Finding All Suboptimal Foldings of an RNA Molecule
-
M. Zuker, "On Finding All Suboptimal Foldings of an RNA Molecule," Science, vol. 244, pp. 48-52, 1989.
-
(1989)
Science
, vol.244
, pp. 48-52
-
-
Zuker, M.1
-
32
-
-
0028249154
-
Prediction of RNA Secondary Structure by Energy Minimization
-
A.M. Griffin and H.G. Griffin, eds, pp, Humana Press, July
-
M. Zuker, "Prediction of RNA Secondary Structure by Energy Minimization," Computer Analysis of Sequence Data, A.M. Griffin and H.G. Griffin, eds., pp. 267-294, Humana Press, July 1994.
-
(1994)
Computer Analysis of Sequence Data
, pp. 267-294
-
-
Zuker, M.1
-
33
-
-
0002287019
-
Algorithms and Thermodynamics for RNA Secondary Structure Prediction: A Practical Guide
-
RNA Biochemistry and Biotechnology, J. Barciszewski and B. Clark, eds, Kluwer Academic Publishers
-
M. Zuker, D.H. Mathews, and D.H. Turner, "Algorithms and Thermodynamics for RNA Secondary Structure Prediction: A Practical Guide," RNA Biochemistry and Biotechnology, series NATO ASI Series, J. Barciszewski and B. Clark, eds., Kluwer Academic Publishers, 1999.
-
(1999)
series NATO ASI Series
-
-
Zuker, M.1
Mathews, D.H.2
Turner, D.H.3
-
34
-
-
0034070995
-
Calculating Nucleic Acid Secondary Structure
-
M. Zuker, "Calculating Nucleic Acid Secondary Structure," Current Opinion in Structural Biology, vol. 10, pp. 303-310, 2000.
-
(2000)
Current Opinion in Structural Biology
, vol.10
, pp. 303-310
-
-
Zuker, M.1
-
35
-
-
0345005029
-
Improved Predictions of Secondary Structures for RNA
-
Oct
-
J.A. Jaeger, D.H. Turner, and M. Zuker, "Improved Predictions of Secondary Structures for RNA," Biochemistry, vol. 86, pp. 7706-7710, Oct. 1989.
-
(1989)
Biochemistry
, vol.86
, pp. 7706-7710
-
-
Jaeger, J.A.1
Turner, D.H.2
Zuker, M.3
-
36
-
-
0025731211
-
A Comparison of Optimal and Suboptimal RNA Secondary Structures Predicted by Free Energy Minimization with Structures Determined by Phylogenetic Comparison
-
M. Zuker, J.A. Jaeger, and D.H. Turner, "A Comparison of Optimal and Suboptimal RNA Secondary Structures Predicted by Free Energy Minimization with Structures Determined by Phylogenetic Comparison," Nucleic Acids Research, vol. 19, no. 10, pp. 2707-2714, 1991.
-
(1991)
Nucleic Acids Research
, vol.19
, Issue.10
, pp. 2707-2714
-
-
Zuker, M.1
Jaeger, J.A.2
Turner, D.H.3
-
37
-
-
0004286966
-
-
D.H. Mathews, T.C. Andre, J. Kim, D.H. Turner, and M. Zuker, An Updated Recursive Algorithm for RNA Secondary Structure Prediction with Improved Free Energy Parameters, Am. Chemical Soc., N.B. Leontis and J. SantaLucia Jr., eds., chapter 15, pp. 246-257, Am. Chemical Soc., 1998.
-
D.H. Mathews, T.C. Andre, J. Kim, D.H. Turner, and M. Zuker, "An Updated Recursive Algorithm for RNA Secondary Structure Prediction with Improved Free Energy Parameters," Am. Chemical Soc., N.B. Leontis and J. SantaLucia Jr., eds., chapter 15, pp. 246-257, Am. Chemical Soc., 1998.
-
-
-
-
38
-
-
2442626706
-
Incorporating Chemical Modification Constraints into a Dynamic Programming Algorithm for Prediction of RNA Secondary Structure
-
D.H. Mathews, M.D. Disney, J.L. Childs, S.J. Schroeder, M. Zuker, and D.H. Turner, "Incorporating Chemical Modification Constraints into a Dynamic Programming Algorithm for Prediction of RNA Secondary Structure," Proc. Nat'l Academy of Sciences, vol. 101, pp. 7287-7292, 2004.
-
(2004)
Proc. Nat'l Academy of Sciences
, vol.101
, pp. 7287-7292
-
-
Mathews, D.H.1
Disney, M.D.2
Childs, J.L.3
Schroeder, S.J.4
Zuker, M.5
Turner, D.H.6
-
39
-
-
0000075467
-
Improved Free-Energy Parameters for Predictions of RNA Duplex Stability
-
S.M. Freier, R. Kierzek, J.A. Jaeger, N. Sugimoto, M.H. Caruthers, T. Neilson, and D.H. Turner, "Improved Free-Energy Parameters for Predictions of RNA Duplex Stability," Proc. Nat'l Academy of Sciences, vol. 83, pp. 9373-9377, 1986.
-
(1986)
Proc. Nat'l Academy of Sciences
, vol.83
, pp. 9373-9377
-
-
Freier, S.M.1
Kierzek, R.2
Jaeger, J.A.3
Sugimoto, N.4
Caruthers, M.H.5
Neilson, T.6
Turner, D.H.7
-
40
-
-
0029100233
-
Predicting Thermodynamic Properties of RNA
-
M.J. Serra and D.H. Turner, "Predicting Thermodynamic Properties of RNA," Methods in Enzymology, vol. 259, pp. 242-261, 1995.
-
(1995)
Methods in Enzymology
, vol.259
, pp. 242-261
-
-
Serra, M.J.1
Turner, D.H.2
-
41
-
-
0032552882
-
Thermodynamic Parameters for an Expanded Nearest-Neighbor Model for Formation of RNA Duplexes with Watson-Crick Base Pairs
-
T. Xia, J. John SantaLucia, M.E. Burkard, R. Kierzek, S.J. Schroeder, X. Jiao, C. Cox, and D.H. Turner, "Thermodynamic Parameters for an Expanded Nearest-Neighbor Model for Formation of RNA Duplexes with Watson-Crick Base Pairs," Biochemistry, vol. 37, pp. 14719-14735, 1998.
-
(1998)
Biochemistry
, vol.37
, pp. 14719-14735
-
-
Xia, T.1
John SantaLucia, J.2
Burkard, M.E.3
Kierzek, R.4
Schroeder, S.J.5
Jiao, X.6
Cox, C.7
Turner, D.H.8
-
42
-
-
0016189342
-
-
P.N. Borer, B. Dengler, I.T. Jr., and OC Uhlenbeck, Stability of Ribonucleic Acid Double-Stranded Helices, J. Molecular Biology, 86, pp. 843-853, 1974.
-
P.N. Borer, B. Dengler, I.T. Jr., and OC Uhlenbeck, "Stability of Ribonucleic Acid Double-Stranded Helices," J. Molecular Biology, vol. 86, pp. 843-853, 1974.
-
-
-
-
43
-
-
0001613489
-
Effects of 3' Dangling End Stacking on the Stability of GGCC and CCGG Double Helixes
-
S.M. Freier, B.J. Burger, D. Alkema, T. Neilson, and D.H. Turner, "Effects of 3' Dangling End Stacking on the Stability of GGCC and CCGG Double Helixes," Biochemistry, vol. 22, no. 26, pp. 6198-6206, 1983.
-
(1983)
Biochemistry
, vol.22
, Issue.26
, pp. 6198-6206
-
-
Freier, S.M.1
Burger, B.J.2
Alkema, D.3
Neilson, T.4
Turner, D.H.5
-
44
-
-
0023040505
-
Polymer-Supported RNA Synthesis and Its Application to Test the Nearest Neighbor Model for Duplex Stability
-
June
-
R. Kierzek, M.H. Caruthers, C.E. Longfellow, D. Swinton, D.H. Turner, and S.M. Freier, "Polymer-Supported RNA Synthesis and Its Application to Test the Nearest Neighbor Model for Duplex Stability," Biochemistry, vol. 25, pp. 7840-7846, June 1986.
-
(1986)
Biochemistry
, vol.25
, pp. 7840-7846
-
-
Kierzek, R.1
Caruthers, M.H.2
Longfellow, C.E.3
Swinton, D.4
Turner, D.H.5
Freier, S.M.6
-
45
-
-
0033591465
-
Expanded Sequence Dependence of Thermodynamic Parameters Improves Prediction of RNA Secondary Structure
-
D.H. Mathews, J. Sabina, M. Zuker, and D.H. Turner, "Expanded Sequence Dependence of Thermodynamic Parameters Improves Prediction of RNA Secondary Structure," J. Molecular Biology, vol. 288, pp. 911-940, 1999.
-
(1999)
J. Molecular Biology
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
46
-
-
0023055766
-
Energetics of Internal GU Mismatches in Ribooligonucleotide Helixes
-
N. Sugimoto, R. Kierzek, S.M. Freier, and D.H. Turner, "Energetics of Internal GU Mismatches in Ribooligonucleotide Helixes," Biochemistry, vol. 25, no. 19, pp. 5755-5759, 1986.
-
(1986)
Biochemistry
, vol.25
, Issue.19
, pp. 5755-5759
-
-
Sugimoto, N.1
Kierzek, R.2
Freier, S.M.3
Turner, D.H.4
-
47
-
-
0026335264
-
Nearest-Neighbor Parameters for GU Mismatches: GU/UG is Destabilizing in the Contexts CGUG/GUGC, UGUA/AUGU but Stabilizing in GGUC/CUGG
-
L. He, R. Kierzek, J. SantaLucia Jr., A.E. Walter, and D.H. Runer, "Nearest-Neighbor Parameters for GU Mismatches: GU/UG is Destabilizing in the Contexts CGUG/GUGC, UGUA/AUGU but Stabilizing in GGUC/CUGG," Biochemistry, vol. 30, pp. 11124-11132, 1991.
-
(1991)
Biochemistry
, vol.30
, pp. 11124-11132
-
-
He, L.1
Kierzek, R.2
SantaLucia Jr., J.3
Walter, A.E.4
Runer, D.H.5
-
48
-
-
0028917227
-
A Periodic Table of Symmetric Tandem Mismatches in RNA
-
M. Wu, J.A. McDowell, and D.H. Turner, "A Periodic Table of Symmetric Tandem Mismatches in RNA," Biochemistry, vol. 34, pp. 3204-3211, 1995.
-
(1995)
Biochemistry
, vol.34
, pp. 3204-3211
-
-
Wu, M.1
McDowell, J.A.2
Turner, D.H.3
-
49
-
-
0030815643
-
Thermodynamics of Nonsymmetric Tandem Mismatches Adjacent to GC Base Pairs in RNA
-
T. Xia, J.A. McDowell, and D.H. Turner, "Thermodynamics of Nonsymmetric Tandem Mismatches Adjacent to GC Base Pairs in RNA," Biochemistry, vol. 36, pp. 12486-12497, 1997.
-
(1997)
Biochemistry
, vol.36
, pp. 12486-12497
-
-
Xia, T.1
McDowell, J.A.2
Turner, D.H.3
-
50
-
-
38949147953
-
A Genetic Algorithm for RNA Secondary Structure Prediction Using Stacking Energy Thermodynamic Models,
-
master's thesis, Simon Fraser Univ
-
A. Deschenes, "A Genetic Algorithm for RNA Secondary Structure Prediction Using Stacking Energy Thermodynamic Models," master's thesis, Simon Fraser Univ., 2005.
-
(2005)
-
-
Deschenes, A.1
-
51
-
-
0002470532
-
A Study of Permutation Crossover Operators on the Traveling Salesman Problem
-
87, pp
-
I.M. Oliver, D.J. Smith, and J.R.C Holland, "A Study of Permutation Crossover Operators on the Traveling Salesman Problem," Proc. Second Int'l Conf. Genetic Algorithms (ICGA '87), pp. 224-230, 1987.
-
(1987)
Proc. Second Int'l Conf. Genetic Algorithms (ICGA
, pp. 224-230
-
-
Oliver, I.M.1
Smith, D.J.2
Holland, J.R.C.3
-
52
-
-
0002755938
-
Schedule Optimization Using Genetic Algorithms
-
L. Davis, ed, Van Nostrand Reinhold
-
G. Syswerda, "Schedule Optimization Using Genetic Algorithms," Handbook of Genetic Algorithms, L. Davis, ed., Van Nostrand Reinhold, 1991.
-
(1991)
Handbook of Genetic Algorithms
-
-
Syswerda, G.1
-
53
-
-
0001164172
-
Alleles, Loci and the Travelling Salesman Problem
-
J. Grefenstette, ed, pp
-
D.E. Goldberg and R. Lingle, Jr, "Alleles, Loci and the Travelling Salesman Problem," Proc. First Int'l Conf. Genetic Algorithms, J. Grefenstette, ed., pp. 154-159, 1985.
-
(1985)
Proc. First Int'l Conf. Genetic Algorithms
, pp. 154-159
-
-
Goldberg, D.E.1
Lingle Jr, R.2
-
54
-
-
2942571539
-
The Comparative RNA Web (CRW) Site: An Online Database of Comparative Sequence and Structure Information for Ribosomal, Intron and Other RNAs
-
J.J. Cannone, S. Subramanian, M.N. Schnare, J.R. Collett, L.M. D'Souza, Y. Du, B. Feng, N. Lin, L.V. Madabusi, K.M. Müller, N. Pande, Z. Shang, N. Yu, and R.R. Gutell, "The Comparative RNA Web (CRW) Site: An Online Database of Comparative Sequence and Structure Information for Ribosomal, Intron and Other RNAs," BMC Bioinformatics, vol. 3, 2002.
-
(2002)
BMC Bioinformatics
, vol.3
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
Collett, J.R.4
D'Souza, L.M.5
Du, Y.6
Feng, B.7
Lin, N.8
Madabusi, L.V.9
Müller, K.M.10
Pande, N.11
Shang, Z.12
Yu, N.13
Gutell, R.R.14
-
56
-
-
0033931867
-
Assessing the Accuracy of Prediction Algorithms for Classification: An Overview
-
P. Baldi, S. Brunak, Y. Chauvin, C.A.F. Andersen, and H. Nielsen, "Assessing the Accuracy of Prediction Algorithms for Classification: An Overview," Bioinformatics, vol. 16, no. 5, pp. 412-424, 2000.
-
(2000)
Bioinformatics
, vol.16
, Issue.5
, pp. 412-424
-
-
Baldi, P.1
Brunak, S.2
Chauvin, Y.3
Andersen, C.A.F.4
Nielsen, H.5
-
57
-
-
26644439939
-
jViz.Rna - A Java Tool for RNA Secondary Structure Visualization
-
K.C. Wiese, E. Glen, and A. Vasudevan, "jViz.Rna - A Java Tool for RNA Secondary Structure Visualization," IEEE Trans. Nano-Bioscience, vol. 4, no. 3, pp. 212-218, 2005.
-
(2005)
IEEE Trans. Nano-Bioscience
, vol.4
, Issue.3
, pp. 212-218
-
-
Wiese, K.C.1
Glen, E.2
Vasudevan, A.3
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